Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG01G001660 Citrullus lanatus HOM05D005847 ORTHO05D007143 0.0e+00 1124.4 564 100.0
CsaV3_5G001820 Cucumis sativus L. HOM05D005847 ORTHO05D007143 2.6e-258 895.2 565 81.1
MELO3C005771.2 Cucumis melo HOM05D005847 ORTHO05D007143 1.1e-256 889.8 565 80.5
Sed0023920 Sechium edule HOM05D005847 ORTHO05D007143 1.1e-256 889.8 564 79.4
QL10p008953 Quercus lobata HOM05D005847 ORTHO05D007143 5.1e-222 774.6 567 70.9
Manes.01G053800 Manihot esculenta HOM05D005847 ORTHO05D007143 6.9e-219 764.2 564 68.3
Gohir.D12G239600 Gossypium hirsutum HOM05D005847 ORTHO05D007143 7.6e-218 760.8 564 69.1
Thecc.03G224700 Theobroma cacao HOM05D005847 ORTHO05D007143 1.0e-217 760.4 574 69.2
Gorai.008G256700 Gossypium raimondii HOM05D005847 ORTHO05D007143 1.7e-217 759.6 564 69.0
Duzib084G0923 Durio zibethinus HOM05D005847 ORTHO05D007143 8.4e-217 757.3 564 69.5
Haze_09129 Corylus avellana HOM05D005847 ORTHO05D007143 1.9e-216 756.1 574 69.0
Gohir.A12G238500 Gossypium hirsutum HOM05D005847 ORTHO05D007143 5.5e-216 754.6 564 68.6
Cfa011951 Carpinus fangiana HOM05D005847 ORTHO05D007143 2.1e-215 752.7 571 68.8
VMungo1127G1163 Vigna mungo HOM05D005847 ORTHO05D007143 3.5e-215 751.9 576 66.1
Eucgr.E01030 Eucalyptus grandis HOM05D005847 ORTHO05D007143 1.0e-214 750.4 564 67.7
MD06G1113800 Malus domestica HOM05D005847 ORTHO05D007143 3.0e-214 748.8 563 67.1
Ciclev10019764m.g Citrus clementina HOM05D005847 ORTHO05D007143 5.1e-214 748.0 570 66.8
Phvul.011G200000 Phaseolus vulgaris HOM05D005847 ORTHO05D007143 1.5e-213 746.5 576 66.0
MD14G1134800 Malus domestica HOM05D005847 ORTHO05D007143 3.3e-213 745.3 563 67.0
Potri.001G086800 Populus trichocarpa HOM05D005847 ORTHO05D007143 9.7e-213 743.8 565 68.1
Nn8g41240 Nelumbo nucifera HOM05D005847 ORTHO05D007143 1.3e-212 743.4 564 66.8
Psat4g194080 Pisum sativum HOM05D005847 ORTHO05D007143 2.2e-212 742.7 558 68.1
CiPaw.11G115200 Carya illinoinensis HOM05D005847 ORTHO05D007143 4.1e-211 738.4 572 68.5
PGR042G1950 Punica granatum HOM05D005847 ORTHO05D007143 4.1e-211 738.4 566 67.8
Atru.chr9.1922 Acer truncatum HOM05D005847 ORTHO05D007143 6.9e-211 737.6 570 66.7
TWI81G0154 Tripterygium wilfordii HOM05D005847 ORTHO05D007143 1.5e-210 736.5 564 66.7
Ca_24013_v3 Cicer arietinum L. HOM05D005847 ORTHO05D007143 2.6e-210 735.7 566 66.3
Prupe.5G126500 Prunus persica HOM05D005847 ORTHO05D007143 3.4e-210 735.3 563 66.3
GSVIVG01019613001 Vitis vinifera HOM05D005847 ORTHO05D007143 1.3e-209 733.4 569 65.9
Medtr8g040700 Medicago truncatula HOM05D005847 ORTHO05D007143 1.7e-209 733.0 565 66.4
CANSAT21G1860 Cannabis sativa HOM05D005847 ORTHO05D007143 2.9e-209 732.3 572 66.8
Glyma.13G191700 Glycine max HOM05D005847 ORTHO05D007143 1.1e-208 730.3 581 64.4
TAR629G2252 Trochodendron aralioides HOM05D005847 ORTHO05D007143 4.6e-207 724.9 564 65.6
Sopen08g031110 Solanum pennellii HOM05D005847 ORTHO05D007143 3.9e-206 721.8 566 65.9
Lalb_Chr13g0298981 Lupinus albus HOM05D005847 ORTHO05D007143 8.8e-206 720.7 572 64.5
Lj2A159T44 Lonicera japonica HOM05D005847 ORTHO05D007143 1.9e-205 719.5 570 66.0
RcHm_v2.0_Chr2g0164461 Rosa chinensis HOM05D005847 ORTHO05D007143 1.9e-205 719.5 566 64.7
Solyc08g082880.4 Solanum lycopersicum HOM05D005847 ORTHO05D007143 1.3e-204 716.8 566 65.5
FAN08G0147 Fragaria x ananassa HOM05D005847 ORTHO05D007143 2.4e-203 712.6 566 64.8
FvH4_5g11440 Fragaria vesca HOM05D005847 ORTHO05D007143 1.2e-202 710.3 566 64.8
Actinidia22190 Actinidia chinensis HOM05D005847 ORTHO05D007143 2.6e-202 709.1 564 64.9
COL.COLO4_10763 Corchorus olitorius HOM05D005847 ORTHO05D007143 2.6e-202 709.1 563 66.4
Sc01g0010500 Simmondsia chinensis HOM05D005847 ORTHO05D007143 4.5e-202 708.4 564 63.8
FAN13G1107 Fragaria x ananassa HOM05D005847 ORTHO05D007143 1.0e-201 707.2 566 64.8
FAN18G1068 Fragaria x ananassa HOM05D005847 ORTHO05D007143 1.7e-201 706.4 566 64.5
Cc08_g16520 Coffea canephora HOM05D005847 ORTHO05D007143 3.2e-200 702.2 565 63.4
MBI12_g02092_MAGBIO Magnolia biondii HOM05D005847 ORTHO05D007143 9.4e-200 700.7 571 63.6
EL10Ac5g12470 Beta vulgaris HOM05D005847 ORTHO05D007143 3.6e-199 698.7 564 61.7
TPR.G8535 Trifolium pratense HOM05D005847 ORTHO05D007143 3.6e-199 698.7 544 65.8
FAN04G0204 Fragaria x ananassa HOM05D005847 ORTHO05D007143 6.1e-199 698.0 566 63.8
Hund18289 Selenicereus undatus HOM05D005847 ORTHO05D007143 3.9e-198 695.3 564 62.6
THA.LOC104809314 Tarenaya hassleriana HOM05D005847 ORTHO05D007143 5.1e-198 694.9 564 64.9
CAN.G567.67 Capsicum annuum HOM05D005847 ORTHO05D007143 3.3e-197 692.2 564 63.3
Lj1g0001744 Lotus japonicus HOM05D005847 ORTHO05D007143 4.4e-197 691.8 646 57.6
PGSC0003DMG400012250 Solanum tuberosum HOM05D005847 ORTHO05D007143 3.1e-195 685.6 580 62.9
Sabra01G0063100 Salix brachista HOM05D005847 ORTHO05D007143 1.0e-190 670.6 564 62.4
DCAR_006499 Daucus carota HOM05D005847 ORTHO05D007143 1.5e-189 666.8 564 61.0
Aqoxy5G04298 Aquilegia oxysepala HOM05D005847 ORTHO05D007143 2.6e-189 666.0 577 59.3
HanXRQChr13g0415001 Helianthus annuus HOM05D005847 ORTHO05D007143 7.4e-189 664.5 568 60.2
Peaxi162Scf00074g00363 Petunia axillaris HOM05D005847 ORTHO05D007143 5.3e-187 658.3 566 61.3
Aqoxy3G00691 Aquilegia oxysepala HOM05D005847 ORTHO05D007143 1.3e-185 653.7 578 58.5
Aa31LG2G1600 Aethionema arabicum HOM05D005847 ORTHO05D007143 1.2e-183 647.1 582 59.1
AL2G10160 Arabidopsis lyrata HOM05D005847 ORTHO05D007143 6.7e-182 641.3 567 59.4
ECA240G1801 Erigeron canadensis HOM05D005847 ORTHO05D007143 1.5e-181 640.2 599 56.9
AT1G64600 Arabidopsis thaliana HOM05D005847 ORTHO05D007143 7.5e-181 637.9 565 59.3
Carub.0002s0014 Capsella rubella HOM05D005847 ORTHO05D007143 1.3e-180 637.1 588 58.0
ATR0757G021 Amborella trichopoda HOM05D005847 ORTHO05D007143 2.8e-180 636.0 557 60.0
Os07g0297300 Oryza sativa ssp. japonica HOM05D005847 ORTHO05D007143 4.5e-178 628.6 573 57.2
Thhalv10023366m.g Eutrema salsugineum HOM05D005847 ORTHO05D007143 2.9e-177 625.9 619 55.3
Sp2g00130 Schrenkiella parvula HOM05D005847 ORTHO05D007143 1.9e-176 623.2 574 57.7
arahy.Tifrunner.gnm1.ann1.PR6ST2 Arachis hypogaea HOM05D005847 ORTHO05D007143 1.8e-174 616.7 520 61.3
arahy.Tifrunner.gnm1.ann1.HI9AVU Arachis hypogaea HOM05D005847 ORTHO05D007143 9.8e-173 610.9 513 61.8
vmacro11522 Vaccinium macrocarpon HOM05D005847 ORTHO05D007143 2.8e-172 609.4 584 57.7
AUR62007027 Chenopodium quinoa HOM05D005847 ORTHO05D007143 3.7e-172 609.0 553 57.9
HPP92_003273 Vanilla planifolia HOM05D005847 ORTHO05D007143 4.8e-172 608.6 572 54.2
Zm00001eb021260 Zea mays HOM05D005847 ORTHO05D007143 8.3e-172 607.8 574 56.4
CSS0040838 Camellia sinensis var. sinensis HOM05D005847 ORTHO05D007143 9.1e-171 604.4 456 68.6
BcaB07g31478 Brassica carinata HOM05D005847 ORTHO05D007143 8.6e-169 597.8 581 55.4
BraA09t37102Z Brassica rapa HOM05D005847 ORTHO05D007143 1.1e-168 597.4 573 55.8
Migut.E00656 Erythranthe guttata HOM05D005847 ORTHO05D007143 3.3e-168 595.9 590 52.9
BcaC04g22588 Brassica carinata HOM05D005847 ORTHO05D007143 7.2e-168 594.7 573 55.7
A09p14540 Brassica napus HOM05D005847 ORTHO05D007143 7.2e-168 594.7 573 55.7
C09p17640 Brassica napus HOM05D005847 ORTHO05D007143 7.2e-168 594.7 573 55.7
BolC9t54656H Brassica oleracea HOM05D005847 ORTHO05D007143 7.2e-168 594.7 573 55.7
PSO017G1852 Papaver somniferum HOM05D005847 ORTHO05D007143 9.8e-165 584.3 590 53.7
SGA_v2.0_scaffold159G37696 Striga asiatica HOM05D005847 ORTHO05D007143 6.3e-164 581.6 562 54.6
AUR62019890 Chenopodium quinoa HOM05D005847 ORTHO05D007143 7.8e-154 548.1 459 61.2
unitig_21.g20386 Utricularia gibba HOM05D005847 ORTHO05D007143 1.5e-152 543.9 562 51.8
Nitab4.5_0002728g0010 Nicotiana tabacum HOM05D005847 ORTHO05D007143 1.2e-149 534.3 421 66.0
Lsat_1_v5_gn_6_83620 Lactuca sativa HOM05D005847 ORTHO05D007143 6.8e-142 508.4 410 64.4
Rhsim02G0249100 Rhododendron simsii HOM05D005847 ORTHO05D007143 5.6e-120 435.6 626 44.2
Nitab4.5_0006880g0020 Nicotiana tabacum HOM05D005847 ORTHO05D007143 8.1e-119 431.8 524 51.1
RcHm_v2.0_Chr7g0186411 Rosa chinensis HOM05D005847 ORTHO05D007143 8.4e-116 421.8 331 66.5
Ah.12g052990 Amaranthus hybridus HOM05D005847 ORTHO05D007143 2.4e-110 403.7 604 40.9
Oeu058016.1 Olea europaea HOM05D005847 ORTHO05D007143 4.0e-110 402.9 572 43.4
Nitab4.5_0002027g0040 Nicotiana tabacum HOM05D005847 ORTHO05D007143 7.6e-101 372.1 550 43.6
Mapoly0031s0174 Marchantia polymorpha HOM05D005847 ORTHO05D007143 5.5e-99 365.9 580 37.1
Pp3c9_6890 Physcomitrium patens HOM05D005847 ORTHO05D007143 5.3e-94 349.4 573 37.0
CDE04G1283 Ceratophyllum demersum HOM05D005847 ORTHO05D007143 5.7e-88 329.3 311 55.6
QL10p010267 Quercus lobata HOM05D005847 ORTHO05D007143 1.3e-87 328.2 204 77.5
MSTRG.26906 Avicennia marina HOM05D005847 ORTHO05D007143 8.2e-87 325.5 311 56.3
MSTRG.15574 Avicennia marina HOM05D005847 ORTHO05D007143 1.4e-86 324.7 260 62.3
SMO119G0297 Selaginella moellendorffii HOM05D005847 ORTHO05D007143 1.0e-81 308.5 611 32.4
RcHm_v2.0_Chr7g0186431 Rosa chinensis HOM05D005847 ORTHO05D007143 1.3e-79 301.6 223 65.0
Cpa.g.sc15.20 Carica papaya HOM05D005847 ORTHO05D007143 9.1e-78 295.4 184 76.6
SHI06935 Sapria himalayana HOM05D005847 ORTHO05D007143 4.7e-74 283.1 518 37.8
CARHR046320 Cardamine hirsuta HOM05D005847 ORTHO05D007143 5.3e-70 269.6 231 57.1
Nn1g00324 Nelumbo nucifera HOM05D005847 ORTHO05D007143 7.2e-67 259.2 250 58.0
SMO115G0010 Selaginella moellendorffii HOM05D005847 ORTHO05D007143 9.4e-59 232.3 315 36.8
SEGI_09534 Sequoiadendron giganteum HOM05D005847 ORTHO05D007143 7.0e-54 216.1 182 59.9
Cpa.g.c33268 Carica papaya HOM05D005847 ORTHO05D007143 2.7e-53 214.2 147 70.7
AagrBONN_evm.TU.Sc2ySwM_228.3279 Anthoceros agrestis HOM05D005847 ORTHO05D007143 2.0e-48 198.0 302 37.1
Aqoxy5G04303 Aquilegia oxysepala HOM05D005847 ORTHO05D007143 2.0e-48 198.0 269 44.2
SMO116G0437 Selaginella moellendorffii HOM05D005847 ORTHO05D007143 4.1e-46 190.3 534 25.8
RcHm_v2.0_Chr7g0205571 Rosa chinensis HOM05D005847 ORTHO05D007143 1.9e-43 181.4 276 45.3
CDE04G2319 Ceratophyllum demersum HOM05D005847 ORTHO05D007143 1.2e-42 178.7 180 50.6
RcHm_v2.0_Chr7g0205551 Rosa chinensis HOM05D005847 ORTHO05D007143 3.5e-37 160.6 287 41.5
CBR_g978 Chara braunii HOM05D005847 ORTHO05D007143 2.6e-32 144.4 432 30.3
MCO09G139 Micromonas commoda HOM05D005847 ORTHO05D007143 1.9e-30 138.3 540 27.4
Atru.chr1.1468 Acer truncatum HOM05D005847 ORTHO05D007143 4.6e-29 133.7 105 61.0
Cpa.g.sc15.22 Carica papaya HOM05D005847 ORTHO05D007143 3.0e-28 131.0 82 74.4
AUR62019891 Chenopodium quinoa HOM05D005847 ORTHO05D007143 3.3e-27 127.5 116 54.3
Nn1g00325 Nelumbo nucifera HOM05D005847 ORTHO05D007143 3.3e-27 127.5 99 66.7
Os10g0520950 Oryza sativa ssp. japonica HOM05D005847 ORTHO05D007143 4.1e-22 110.5 121 51.2
Lj3g0011757 Lotus japonicus HOM05D005847 ORTHO05D007143 4.7e-18 97.1 182 37.4
Cre05.g237600 Chlamydomonas reinhardtii HOM05D005847 ORTHO05D007143 5.2e-17 93.6 153 37.3
Medtr8g040720 Medicago truncatula HOM05D005847 ORTHO05D007143 1.4e-14 85.5 52 63.5
QL02p028460 Quercus lobata HOM05D005847 ORTHO05D007143 1.9e-14 85.1 166 38.0
QL02p028464 Quercus lobata HOM05D005847 ORTHO05D007143 7.8e-13 79.7 91 47.3
Nitab4.5_0000109g0320 Nicotiana tabacum HOM05D005847 ORTHO05D007143 3.6e-10 70.9 70 52.9
Medtr8g040530 Medicago truncatula HOM05D005847 ORTHO05D007143 2.2e-07 61.6 87 37.9
Sabra03G0104700 Salix brachista HOM05D005847 ORTHO05D007143 5.4e-06 57.0 61 57.4


User provided reference genes

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