Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG01G001480 Citrullus lanatus HOM05D007467 ORTHO05D009441 1.8e-110 402.9 251 100.0
CsaV3_5G001620 Cucumis sativus L. HOM05D007467 ORTHO05D009441 1.7e-76 290.0 256 77.7
MELO3C005789.2 Cucumis melo HOM05D007467 ORTHO05D009441 1.1e-70 270.8 255 75.3
Sed0003485 Sechium edule HOM05D007467 ORTHO05D009441 3.6e-58 229.2 256 69.5
Thecc.03G219300 Theobroma cacao HOM05D007467 ORTHO05D009441 7.0e-46 188.3 273 56.8
COL.COLO4_10812 Corchorus olitorius HOM05D007467 ORTHO05D009441 3.6e-42 176.0 251 47.8
Duzib084G1076 Durio zibethinus HOM05D007467 ORTHO05D009441 8.0e-42 174.9 260 50.8
Potri.001G082600 Populus trichocarpa HOM05D007467 ORTHO05D009441 8.0e-42 174.9 269 56.5
Duzib205G1912 Durio zibethinus HOM05D007467 ORTHO05D009441 1.8e-41 173.7 275 54.5
Gohir.A12G240800 Gossypium hirsutum HOM05D007467 ORTHO05D009441 8.8e-41 171.4 256 47.3
Prupe.5G131500 Prunus persica HOM05D007467 ORTHO05D009441 9.7e-40 167.9 280 51.8
RcHm_v2.0_Chr7g0187371 Rosa chinensis HOM05D007467 ORTHO05D009441 9.7e-40 167.9 251 53.0
Gohir.D12G242100 Gossypium hirsutum HOM05D007467 ORTHO05D009441 2.2e-39 166.8 256 46.1
Gorai.008G259400 Gossypium raimondii HOM05D007467 ORTHO05D009441 2.2e-39 166.8 256 46.1
MD06G1120900 Malus domestica HOM05D007467 ORTHO05D009441 2.2e-39 166.8 262 52.7
Potri.003G147900 Populus trichocarpa HOM05D007467 ORTHO05D009441 1.1e-38 164.5 263 54.4
Manes.02G001700 Manihot esculenta HOM05D007467 ORTHO05D009441 1.8e-38 163.7 251 46.6
Cfa011912 Carpinus fangiana HOM05D007467 ORTHO05D009441 2.4e-38 163.3 265 52.8
Sabra01G0059300 Salix brachista HOM05D007467 ORTHO05D009441 2.4e-38 163.3 269 54.6
Haze_09186 Corylus avellana HOM05D007467 ORTHO05D009441 9.1e-38 161.4 264 52.3
CSS0030138 Camellia sinensis var. sinensis HOM05D007467 ORTHO05D009441 1.6e-37 160.6 256 51.6
GSVIVG01019666001 Vitis vinifera HOM05D007467 ORTHO05D009441 4.5e-37 159.1 251 53.4
QL02p027667 Quercus lobata HOM05D007467 ORTHO05D009441 2.2e-36 156.8 285 50.9
MD14G1137500 Malus domestica HOM05D007467 ORTHO05D009441 2.9e-36 156.4 264 43.6
FAN13G1608 Fragaria x ananassa HOM05D007467 ORTHO05D009441 1.1e-35 154.5 251 54.2
Atru.chr9.1852 Acer truncatum HOM05D007467 ORTHO05D009441 1.5e-35 154.1 261 52.9
FAN08G2920 Fragaria x ananassa HOM05D007467 ORTHO05D009441 1.5e-35 154.1 251 53.4
FAN04G1879 Fragaria x ananassa HOM05D007467 ORTHO05D009441 1.9e-35 153.7 251 53.8
FvH4_5g10770 Fragaria vesca HOM05D007467 ORTHO05D009441 2.5e-35 153.3 251 53.8
FAN18G0937 Fragaria x ananassa HOM05D007467 ORTHO05D009441 2.5e-35 153.3 251 53.8
CiPaw.11G111200 Carya illinoinensis HOM05D007467 ORTHO05D009441 4.2e-35 152.5 249 53.0
Ciclev10020958m.g Citrus clementina HOM05D007467 ORTHO05D009441 4.2e-35 152.5 267 52.8
Rhsim02G0253000 Rhododendron simsii HOM05D007467 ORTHO05D009441 5.5e-35 152.1 251 51.8
TWI60G0745 Tripterygium wilfordii HOM05D007467 ORTHO05D009441 1.2e-34 151.0 290 50.7
vmacro11497 Vaccinium macrocarpon HOM05D007467 ORTHO05D009441 1.0e-33 147.9 252 51.2
HanXRQChr07g0192371 Helianthus annuus HOM05D007467 ORTHO05D009441 2.3e-33 146.7 251 48.2
Peaxi162Scf00074g00113 Petunia axillaris HOM05D007467 ORTHO05D009441 3.0e-33 146.4 252 51.2
Sabra03G0107500 Salix brachista HOM05D007467 ORTHO05D009441 3.0e-33 146.4 264 52.7
Gohir.D09G183100 Gossypium hirsutum HOM05D007467 ORTHO05D009441 8.8e-33 144.8 248 53.6
Gorai.006G205400 Gossypium raimondii HOM05D007467 ORTHO05D009441 8.8e-33 144.8 248 53.6
Gohir.A09G188250 Gossypium hirsutum HOM05D007467 ORTHO05D009441 2.6e-32 143.3 247 53.8
Aqoxy7G00009 Aquilegia oxysepala HOM05D007467 ORTHO05D009441 3.4e-32 142.9 252 52.0
Nn1g00417 Nelumbo nucifera HOM05D007467 ORTHO05D009441 3.4e-32 142.9 250 42.0
Nitab4.5_0008141g0040 Nicotiana tabacum HOM05D007467 ORTHO05D009441 3.4e-32 142.9 262 47.3
CAN.G567.94 Capsicum annuum HOM05D007467 ORTHO05D009441 4.4e-32 142.5 251 48.6
CANSAT21G0614 Cannabis sativa HOM05D007467 ORTHO05D009441 7.5e-32 141.7 261 50.6
Nitab4.5_0002720g0040 Nicotiana tabacum HOM05D007467 ORTHO05D009441 1.7e-31 140.6 254 50.0
MSTRG.13707 Avicennia marina HOM05D007467 ORTHO05D009441 3.7e-31 139.4 260 51.9
DCAR_006558 Daucus carota HOM05D007467 ORTHO05D009441 4.8e-31 139.0 253 41.5
TWI15G0957 Tripterygium wilfordii HOM05D007467 ORTHO05D009441 1.1e-30 137.9 295 41.0
Lsat_1_v5_gn_6_10100 Lactuca sativa HOM05D007467 ORTHO05D009441 1.4e-30 137.5 254 40.2
Eucgr.E01052 Eucalyptus grandis HOM05D007467 ORTHO05D009441 3.1e-30 136.3 303 46.2
Oeu042839.1 Olea europaea HOM05D007467 ORTHO05D009441 1.6e-29 134.0 257 50.2
Lj2P155T22 Lonicera japonica HOM05D007467 ORTHO05D009441 2.7e-29 133.3 249 51.0
Oeu013372.1 Olea europaea HOM05D007467 ORTHO05D009441 3.5e-29 132.9 251 49.8
ECA233G1457 Erigeron canadensis HOM05D007467 ORTHO05D009441 1.0e-28 131.3 251 47.8
PGR042G1595 Punica granatum HOM05D007467 ORTHO05D009441 1.3e-28 131.0 248 52.4
TAR636G1420 Trochodendron aralioides HOM05D007467 ORTHO05D009441 1.3e-28 131.0 242 40.9
Hma1.2p1_0456F.1_g156740 Hydrangea macrophylla HOM05D007467 ORTHO05D009441 2.9e-28 129.8 240 48.8
TAR629G1879 Trochodendron aralioides HOM05D007467 ORTHO05D009441 5.0e-28 129.0 251 50.6
MBI04_g15581_MAGBIO Magnolia biondii HOM05D007467 ORTHO05D009441 1.9e-27 127.1 240 40.0
PGSC0003DMG400012234 Solanum tuberosum HOM05D007467 ORTHO05D009441 5.5e-27 125.6 251 46.6
MBI04_g43054_MAGBIO Magnolia biondii HOM05D007467 ORTHO05D009441 3.6e-26 122.9 240 39.2
Aa31LG2G1740 Aethionema arabicum HOM05D007467 ORTHO05D009441 1.4e-25 120.9 252 45.2
Cc08_g16860 Coffea canephora HOM05D007467 ORTHO05D009441 6.8e-25 118.6 246 47.2
Dinv18747 Davidia involucrata HOM05D007467 ORTHO05D009441 3.4e-24 116.3 219 50.2
Nn3g18852 Nelumbo nucifera HOM05D007467 ORTHO05D009441 4.9e-23 112.5 238 48.3
BcaC04g22507 Brassica carinata HOM05D007467 ORTHO05D009441 9.2e-22 108.2 241 41.1
Solyc08g083220.1 Solanum lycopersicum HOM05D007467 ORTHO05D009441 9.2e-22 108.2 247 43.3
Sopen08g031410 Solanum pennellii HOM05D007467 ORTHO05D009441 2.0e-21 107.1 248 42.3
CARHR046220 Cardamine hirsuta HOM05D007467 ORTHO05D009441 4.5e-21 105.9 240 37.1
ClCG00G001110 Citrullus lanatus HOM05D007467 ORTHO05D009441 3.3e-19 99.8 83 100.0
MBI12_g21574_MAGBIO Magnolia biondii HOM05D007467 ORTHO05D009441 3.3e-19 99.8 240 43.8
CDE02G3312 Ceratophyllum demersum HOM05D007467 ORTHO05D009441 9.5e-19 98.2 250 35.6
SGA_v2.0_scaffold267G46175 Striga asiatica HOM05D007467 ORTHO05D009441 1.5e-16 90.9 230 41.3
Zm00001eb023700 Zea mays HOM05D007467 ORTHO05D009441 2.6e-16 90.1 253 37.9
Sp2g00870 Schrenkiella parvula HOM05D007467 ORTHO05D009441 3.4e-16 89.7 241 42.3
Carub.0002s0004 Capsella rubella HOM05D007467 ORTHO05D009441 5.7e-16 89.0 241 42.7
PSO782G5165 Papaver somniferum HOM05D007467 ORTHO05D009441 7.5e-16 88.6 259 42.5
Thhalv10023631m.g Eutrema salsugineum HOM05D007467 ORTHO05D009441 1.3e-15 87.8 241 32.8
A09p15270 Brassica napus HOM05D007467 ORTHO05D009441 4.9e-15 85.9 241 37.3
BraA09t37173Z Brassica rapa HOM05D007467 ORTHO05D009441 4.9e-15 85.9 241 37.3
PSO478G5135 Papaver somniferum HOM05D007467 ORTHO05D009441 6.4e-15 85.5 259 39.8
C09p18550 Brassica napus HOM05D007467 ORTHO05D009441 1.1e-14 84.7 241 36.5
BolC9t54751H Brassica oleracea HOM05D007467 ORTHO05D009441 1.1e-14 84.7 241 36.5
AUR62007067 Chenopodium quinoa HOM05D007467 ORTHO05D009441 1.1e-14 84.7 276 33.0
THA.LOC104823626 Tarenaya hassleriana HOM05D007467 ORTHO05D009441 2.4e-14 83.6 251 38.2
AUR62019932 Chenopodium quinoa HOM05D007467 ORTHO05D009441 4.1e-14 82.8 255 34.5
Oeu022032.1 Olea europaea HOM05D007467 ORTHO05D009441 1.6e-13 80.9 172 37.8
Ah.12g053280 Amaranthus hybridus HOM05D007467 ORTHO05D009441 1.9e-11 73.9 184 35.9
BcaB07g31413 Brassica carinata HOM05D007467 ORTHO05D009441 4.3e-11 72.8 241 36.9
PGSC0003DMG400013732 Solanum tuberosum HOM05D007467 ORTHO05D009441 3.1e-09 66.6 151 37.1
EL10Ac5g12411 Beta vulgaris HOM05D007467 ORTHO05D009441 8.9e-09 65.1 230 30.9
CDE11G0649 Ceratophyllum demersum HOM05D007467 ORTHO05D009441 1.5e-08 64.3 82 45.1
Actinidia22211 Actinidia chinensis HOM05D007467 ORTHO05D009441 9.8e-08 61.6 60 60.0
Os10g0562600 Oryza sativa ssp. japonica HOM05D007467 ORTHO05D009441 1.3e-07 61.2 223 34.5
AT1G64690 Arabidopsis thaliana HOM05D007467 ORTHO05D009441 2.9e-07 60.1 241 37.3
AL2G10070 Arabidopsis lyrata HOM05D007467 ORTHO05D009441 5.4e-06 55.8 241 35.7
Prupe.4G021500 Prunus persica HOM05D002166 ORTHO05D002634 9.2e-06 55.1 47 55.3


User provided reference genes

Program Settings