Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG01G001340 Citrullus lanatus HOM05D007599 ORTHO05D009548 2.1e-42 175.3 88 100.0
Sed0012861 Sechium edule HOM05D007599 ORTHO05D009548 5.4e-38 160.6 88 90.9
MELO3C005802.2 Cucumis melo HOM05D007599 ORTHO05D009548 1.0e-36 156.4 88 90.9
CsaV3_5G001470 Cucumis sativus L. HOM05D007599 ORTHO05D009548 1.0e-36 156.4 88 90.9
Sc07g0010220 Simmondsia chinensis HOM05D007599 ORTHO05D009548 7.1e-30 133.7 90 76.7
Sopen10g024670 Solanum pennellii HOM05D007599 ORTHO05D009548 4.6e-29 131.0 85 76.5
Lsat_1_v5_gn_3_11180 Lactuca sativa HOM05D007599 ORTHO05D009548 1.0e-28 129.8 86 76.7
Oeu029803.1 Olea europaea HOM05D007599 ORTHO05D009548 3.0e-28 128.3 83 75.9
PGSC0003DMG400012109 Solanum tuberosum HOM05D007599 ORTHO05D009548 6.7e-28 127.1 83 74.7
GSVIVG01019698001 Vitis vinifera HOM05D007599 ORTHO05D009548 1.9e-27 125.6 90 72.2
unitig_62.g23260 Utricularia gibba HOM05D007599 ORTHO05D009548 1.3e-26 122.9 84 77.4
Solyc08g083380.2 Solanum lycopersicum HOM05D007599 ORTHO05D009548 2.1e-26 122.1 85 72.9
MSTRG.12224 Avicennia marina HOM05D007599 ORTHO05D009548 3.7e-26 121.3 78 76.9
HanXRQChr17g0534931 Helianthus annuus HOM05D007599 ORTHO05D009548 4.8e-26 120.9 84 73.8
AL2G14680 Arabidopsis lyrata HOM05D007599 ORTHO05D009548 6.2e-26 120.6 83 69.9
EL10Ac5g12394 Beta vulgaris HOM05D007599 ORTHO05D009548 1.2e-24 116.3 85 74.1
Atru.chr9.1835 Acer truncatum HOM05D007599 ORTHO05D009548 1.7e-23 112.5 90 63.3
FAN18G2966 Fragaria x ananassa HOM05D007599 ORTHO05D009548 1.7e-23 112.5 109 56.0
SGA_v2.0_scaffold88G27242 Striga asiatica HOM05D007599 ORTHO05D009548 2.2e-23 112.1 120 50.8
Thhalv10019387m.g Eutrema salsugineum HOM05D007599 ORTHO05D009548 6.5e-23 110.5 81 67.9
Os02g0682600 Oryza sativa ssp. japonica HOM05D007599 ORTHO05D009548 1.9e-22 109.0 85 69.4
Duzib084G0922 Durio zibethinus HOM05D007599 ORTHO05D009548 3.2e-22 108.2 75 72.0
Actinidia22230 Actinidia chinensis HOM05D007599 ORTHO05D009548 9.3e-22 106.7 88 63.6
Mapoly0015s0046 Marchantia polymorpha HOM05D007599 ORTHO05D009548 2.7e-21 105.1 84 64.3
AUR62007084 Chenopodium quinoa HOM05D007599 ORTHO05D009548 3.5e-21 104.8 84 65.5
AUR62019947 Chenopodium quinoa HOM05D007599 ORTHO05D009548 3.5e-21 104.8 84 65.5
Ciclev10023088m.g Citrus clementina HOM05D007599 ORTHO05D009548 6.1e-21 104.0 84 65.5
Gohir.A12G242400 Gossypium hirsutum HOM05D007599 ORTHO05D009548 6.1e-21 104.0 84 65.5
FvH4_5g07140 Fragaria vesca HOM05D007599 ORTHO05D009548 1.8e-20 102.4 76 61.8
FAN08G0181 Fragaria x ananassa HOM05D007599 ORTHO05D009548 1.1e-19 99.8 142 43.0
AagrBONN_evm.TU.Sc2ySwM_117.1837 Anthoceros agrestis HOM05D007599 ORTHO05D009548 4.3e-19 97.8 84 61.9
RcHm_v2.0_Chr7g0187811 Rosa chinensis HOM05D007599 ORTHO05D009548 4.3e-19 97.8 87 59.8
FAN08G0537 Fragaria x ananassa HOM05D007599 ORTHO05D009548 5.7e-19 97.4 78 53.8
FAN13G2393 Fragaria x ananassa HOM05D007599 ORTHO05D009548 7.4e-19 97.1 78 55.1
TPR.G21312 Trifolium pratense HOM05D007599 ORTHO05D009548 1.3e-18 96.3 88 51.1
Pp3c25_10700 Physcomitrium patens HOM05D007599 ORTHO05D009548 1.6e-18 95.9 86 59.3
Migut.E00717 Erythranthe guttata HOM05D007599 ORTHO05D009548 1.5e-16 89.4 62 72.6
CiPaw.12G074700 Carya illinoinensis HOM05D007599 ORTHO05D009548 4.5e-16 87.8 90 57.8
CAN.G567.112 Capsicum annuum HOM05D007599 ORTHO05D009548 1.0e-15 86.7 83 57.8
FvH4_5g10420 Fragaria vesca HOM05D007599 ORTHO05D009548 1.7e-15 85.9 81 54.3
AT1G61570 Arabidopsis thaliana HOM05D007599 ORTHO05D009548 3.8e-15 84.7 84 53.6
Rhsim02G0254600 Rhododendron simsii HOM05D007599 ORTHO05D009548 5.0e-15 84.3 48 79.2
CANSAT21G1781 Cannabis sativa HOM05D007599 ORTHO05D009548 6.5e-15 84.0 87 51.7
Manes.01G000403 Manihot esculenta HOM05D007599 ORTHO05D009548 6.5e-15 84.0 89 53.9
Sabra16G0305100 Salix brachista HOM05D007599 ORTHO05D009548 8.5e-15 83.6 52 76.9
Manes.02G000300 Manihot esculenta HOM05D007599 ORTHO05D009548 9.4e-14 80.1 89 53.9
MCO15G174 Micromonas commoda HOM05D007599 ORTHO05D009548 1.2e-13 79.7 59 55.9
Os01g0932550 Oryza sativa ssp. japonica HOM05D007599 ORTHO05D009548 2.1e-13 79.0 48 75.0
SHI06900 Sapria himalayana HOM05D007599 ORTHO05D009548 2.1e-13 79.0 51 68.6
AagrBONN_evm.TU.Sc2ySwM_344.1292 Anthoceros agrestis HOM05D007599 ORTHO05D009548 6.1e-13 77.4 89 48.3
CDE11G1025 Ceratophyllum demersum HOM05D007599 ORTHO05D009548 6.1e-13 77.4 83 54.2
CDE09G0527 Ceratophyllum demersum HOM05D007599 ORTHO05D009548 1.8e-12 75.9 83 51.8
PRCOL_00005458 Prasinoderma coloniale HOM05D007599 ORTHO05D009548 1.8e-12 75.9 61 47.5
Actinidia27277 Actinidia chinensis HOM05D007599 ORTHO05D009548 2.3e-12 75.5 88 50.0
Rhsim07G0075900 Rhododendron simsii HOM05D007599 ORTHO05D009548 3.0e-12 75.1 86 52.3
FAN04G0849 Fragaria x ananassa HOM05D007599 ORTHO05D009548 6.7e-12 73.9 81 48.1
Cc08_g17030 Coffea canephora HOM05D007599 ORTHO05D009548 1.1e-11 73.2 87 49.4
FAN13G0770 Fragaria x ananassa HOM05D007599 ORTHO05D009548 1.1e-11 73.2 81 48.1
CSS0029258 Camellia sinensis var. sinensis HOM05D007599 ORTHO05D009548 1.5e-11 72.8 88 47.7
COL.COLO4_10843 Corchorus olitorius HOM05D007599 ORTHO05D009548 3.3e-11 71.6 88 46.6
AL1G56360 Arabidopsis lyrata HOM05D007599 ORTHO05D009548 5.7e-11 70.9 36 88.9
Duzib068G0772 Durio zibethinus HOM05D007599 ORTHO05D009548 5.7e-11 70.9 84 50.0
Cre16.g650800 Chlamydomonas reinhardtii HOM05D007599 ORTHO05D009548 9.7e-11 70.1 61 44.3
Gohir.D12G243500 Gossypium hirsutum HOM05D007599 ORTHO05D009548 1.7e-10 69.3 84 48.8
Gorai.008G260900 Gossypium raimondii HOM05D007599 ORTHO05D009548 1.7e-10 69.3 84 48.8
Haze_09213 Corylus avellana HOM05D007599 ORTHO05D009548 2.2e-10 68.9 90 47.8
Nitab4.5_0000357g0300 Nicotiana tabacum HOM05D007599 ORTHO05D009548 2.8e-10 68.6 83 48.2
TWI60G1211 Tripterygium wilfordii HOM05D007599 ORTHO05D009548 8.2e-10 67.0 85 43.5
Haze_27758 Corylus avellana HOM05D007599 ORTHO05D009548 1.1e-09 66.6 64 45.3
Carub.0002s0362 Capsella rubella HOM05D007599 ORTHO05D009548 2.4e-09 65.5 83 45.8
TAR374G1499 Trochodendron aralioides HOM05D007599 ORTHO05D009548 1.2e-08 63.2 67 53.7
TWI81G0432 Tripterygium wilfordii HOM05D007599 ORTHO05D009548 2.6e-08 62.0 85 41.2
Sp5g30310 Schrenkiella parvula HOM05D007599 ORTHO05D009548 4.5e-08 61.2 80 43.8
Dinv18777 Davidia involucrata HOM05D007599 ORTHO05D009548 1.7e-07 59.3 85 42.4
CARHR050820 Cardamine hirsuta HOM05D007599 ORTHO05D009548 3.8e-07 58.2 78 41.0
CBR_g48723 Chara braunii HOM05D007599 ORTHO05D009548 6.5e-07 57.4 83 43.4
PSO135G0169 Papaver somniferum HOM05D007599 ORTHO05D009548 2.5e-06 55.5 83 47.0
PSO384G2353 Papaver somniferum HOM05D007599 ORTHO05D009548 2.5e-06 55.5 83 47.0
Sabra12G0075900 Salix brachista HOM05D005222 ORTHO05D006230 3.2e-06 55.1 78 41.0
MBI12_g00589_MAGBIO Magnolia biondii HOM05D007599 ORTHO05D009548 4.2e-06 54.7 51 52.9
Nitab4.5_0008664g0060 Nicotiana tabacum HOM05D007599 ORTHO05D009548 4.2e-06 54.7 83 41.0
BcaC08g46942 Brassica carinata HOM05D007599 ORTHO05D009548 7.2e-06 53.9 80 41.2
C06p49140 Brassica napus HOM05D007599 ORTHO05D009548 7.2e-06 53.9 80 41.2
BolC6t39948H Brassica oleracea HOM05D001180 ORTHO05D001055 7.2e-06 53.9 80 41.2
Cfa018742 Carpinus fangiana HOM05D005222 ORTHO05D006230 7.2e-06 53.9 69 39.1


User provided reference genes

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