Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG01G000480 Citrullus lanatus HOM05D004051 ORTHO05D004480 1.4e-44 182.6 92 100.0
MELO3C005880.2 Cucumis melo HOM05D004051 ORTHO05D004480 3.1e-36 154.8 92 89.1
Sed0007169 Sechium edule HOM05D004051 ORTHO05D004480 3.3e-30 134.8 85 83.5
CiPaw.05G255100 Carya illinoinensis HOM05D004051 ORTHO05D004480 2.8e-21 105.1 84 66.7
CiPaw.05G252200 Carya illinoinensis HOM05D004051 ORTHO05D004480 3.7e-21 104.8 84 66.7
CsaV3_5G000560 Cucumis sativus L. HOM05D004051 ORTHO05D004480 6.3e-21 104.0 66 83.3
CiPaw.05G255500 Carya illinoinensis HOM05D004051 ORTHO05D004480 4.1e-20 101.3 84 64.3
QL09p009613 Quercus lobata HOM05D004051 ORTHO05D004480 4.1e-20 101.3 85 68.2
Thecc.03G195700 Theobroma cacao HOM05D004051 ORTHO05D004480 4.1e-20 101.3 85 67.1
Gohir.D08G104000 Gossypium hirsutum HOM05D004051 ORTHO05D004480 4.5e-19 97.8 87 63.2
Gorai.004G111400 Gossypium raimondii HOM05D004051 ORTHO05D004480 4.5e-19 97.8 87 63.2
Gohir.A08G096024 Gossypium hirsutum HOM05D004051 ORTHO05D004480 5.9e-19 97.4 93 61.3
Actinidia03163 Actinidia chinensis HOM05D004051 ORTHO05D004480 2.9e-18 95.1 83 62.7
FAN03G1224 Fragaria x ananassa HOM05D004051 ORTHO05D004480 2.9e-18 95.1 87 58.6
Potri.012G011600 Populus trichocarpa HOM05D004051 ORTHO05D004480 2.9e-18 95.1 82 61.0
MD01G1219400 Malus domestica HOM05D004051 ORTHO05D004480 8.5e-18 93.6 84 60.7
Ciclev10006352m.g Citrus clementina HOM05D004051 ORTHO05D004480 1.1e-17 93.2 77 64.9
MBI06_g08462_MAGBIO Magnolia biondii HOM05D004051 ORTHO05D004480 1.9e-17 92.4 81 65.4
Nn3g19011 Nelumbo nucifera HOM05D004051 ORTHO05D004480 2.5e-17 92.0 80 63.8
FAN10G0142 Fragaria x ananassa HOM05D004051 ORTHO05D004480 3.2e-17 91.7 84 58.3
FvH4_7g31780 Fragaria vesca HOM05D004051 ORTHO05D004480 4.2e-17 91.3 84 58.3
Dinv29295 Davidia involucrata HOM05D004051 ORTHO05D004480 5.5e-17 90.9 79 62.0
RcHm_v2.0_Chr1g0381011 Rosa chinensis HOM05D004051 ORTHO05D004480 7.2e-17 90.5 83 60.2
GSVIVG01038715001 Vitis vinifera HOM05D004051 ORTHO05D004480 1.2e-16 89.7 77 64.9
Manes.06G159300 Manihot esculenta HOM05D004051 ORTHO05D004480 2.1e-16 89.0 84 59.5
FAN01G1391 Fragaria x ananassa HOM05D004051 ORTHO05D004480 2.8e-16 88.6 83 56.6
Nn1g01872 Nelumbo nucifera HOM05D004051 ORTHO05D004480 2.8e-16 88.6 78 61.5
PGR042G3499 Punica granatum HOM05D004051 ORTHO05D004480 2.8e-16 88.6 84 52.4
FAN10G1914 Fragaria x ananassa HOM05D004051 ORTHO05D004480 3.6e-16 88.2 89 55.1
arahy.Tifrunner.gnm1.ann1.T1KBZJ Arachis hypogaea HOM05D004051 ORTHO05D004480 1.0e-15 86.7 84 60.7
TAR629G1304 Trochodendron aralioides HOM05D004051 ORTHO05D004480 4.0e-15 84.7 78 62.8
Rhsim09G0205000 Rhododendron simsii HOM05D004051 ORTHO05D004480 6.8e-15 84.0 84 59.5
Sc13g0009750 Simmondsia chinensis HOM05D004051 ORTHO05D004480 6.8e-15 84.0 77 63.6
arahy.Tifrunner.gnm1.ann1.E0UY0G Arachis hypogaea HOM05D004051 ORTHO05D004480 8.8e-15 83.6 84 59.5
arahy.Tifrunner.gnm1.ann1.ZDLG37 Arachis hypogaea HOM05D004051 ORTHO05D004480 8.8e-15 83.6 84 58.3
Hund04853 Selenicereus undatus HOM05D004051 ORTHO05D004480 8.8e-15 83.6 78 60.3
AUR62019374 Chenopodium quinoa HOM05D004051 ORTHO05D004480 1.5e-14 82.8 82 56.1
CANSAT21G2574 Cannabis sativa HOM05D004051 ORTHO05D004480 2.0e-14 82.4 83 53.0
Atru.chr1.148 Acer truncatum HOM05D004051 ORTHO05D004480 9.8e-14 80.1 77 61.0
A02p40750 Brassica napus HOM05D004051 ORTHO05D004480 2.2e-13 79.0 77 54.5
AL6G35560 Arabidopsis lyrata HOM05D004051 ORTHO05D004480 2.8e-13 78.6 77 57.1
Glyma.01G225400 Glycine max HOM05D004051 ORTHO05D004480 2.8e-13 78.6 80 58.8
BcaB07g29898 Brassica carinata HOM05D004051 ORTHO05D004480 3.7e-13 78.2 77 54.5
EL10Ac3g05304 Beta vulgaris HOM05D004051 ORTHO05D004480 4.9e-13 77.8 78 56.4
HPP92_020160 Vanilla planifolia HOM05D004051 ORTHO05D004480 4.9e-13 77.8 91 49.5
Phvul.002G298100 Phaseolus vulgaris HOM05D004051 ORTHO05D004480 6.3e-13 77.4 78 59.0
HPP92_020177 Vanilla planifolia HOM05D004051 ORTHO05D004480 6.3e-13 77.4 90 53.3
AT5G24165 Arabidopsis thaliana HOM05D004051 ORTHO05D004480 8.3e-13 77.0 77 57.1
COL.COLO4_10706 Corchorus olitorius HOM05D004051 ORTHO05D004480 8.3e-13 77.0 81 56.8
BcaNung01214 Brassica carinata HOM05D004051 ORTHO05D004480 1.1e-12 76.6 77 53.2
Cfa016383 Carpinus fangiana HOM05D021618 ORTHO05D004480 1.1e-12 76.6 87 51.7
Sp2g23150 Schrenkiella parvula HOM05D004051 ORTHO05D004480 1.1e-12 76.6 78 56.4
Carub.0006s2191 Capsella rubella HOM05D004051 ORTHO05D004480 1.4e-12 76.3 77 55.8
CARHR189350 Cardamine hirsuta HOM05D004051 ORTHO05D004480 1.8e-12 75.9 77 55.8
CDE09G0659 Ceratophyllum demersum HOM05D004051 ORTHO05D004480 1.8e-12 75.9 79 57.0
CDE02G2345 Ceratophyllum demersum HOM05D004051 ORTHO05D004480 3.1e-12 75.1 77 55.8
FAN06G1266 Fragaria x ananassa HOM05D004051 ORTHO05D004480 3.1e-12 75.1 78 53.8
Glyma.11G017600 Glycine max HOM05D004051 ORTHO05D004480 3.1e-12 75.1 80 52.5
Hma1.2p1_1461F.1_g285050 Hydrangea macrophylla HOM05D004051 ORTHO05D004480 3.1e-12 75.1 83 54.2
Hma1.2p1_2808F.1_g328863 Hydrangea macrophylla HOM05D004051 ORTHO05D004480 3.1e-12 75.1 83 54.2
Aa31LG11G3430 Aethionema arabicum HOM05D004051 ORTHO05D004480 4.1e-12 74.7 81 53.1
Thhalv10005218m.g Eutrema salsugineum HOM05D004051 ORTHO05D004480 5.4e-12 74.3 77 53.2
Gohir.D12G237800 Gossypium hirsutum HOM05D004051 ORTHO05D004480 5.4e-12 74.3 85 58.8
DCAR_010606 Daucus carota HOM05D004051 ORTHO05D004480 7.0e-12 73.9 83 50.6
Gohir.D12G237933 Gossypium hirsutum HOM05D004051 ORTHO05D004480 1.2e-11 73.2 85 57.6
Gorai.008G254600 Gossypium raimondii HOM05D004051 ORTHO05D004480 1.2e-11 73.2 85 57.6
C07p43550 Brassica napus HOM05D004051 ORTHO05D004480 1.6e-11 72.8 77 51.9
Duzib205G1876 Durio zibethinus HOM05D004051 ORTHO05D004480 1.6e-11 72.8 84 54.8
Psat7g025560 Pisum sativum HOM05D004051 ORTHO05D004480 1.6e-11 72.8 79 58.2
BcaNung01808 Brassica carinata HOM05D004051 ORTHO05D004480 2.0e-11 72.4 77 50.6
Lj4g0013283 Lotus japonicus HOM05D004051 ORTHO05D004480 2.0e-11 72.4 82 51.2
Lalb_Chr05g0224141 Lupinus albus HOM05D004051 ORTHO05D004480 2.0e-11 72.4 77 54.5
Oeu054023.1 Olea europaea HOM05D004051 ORTHO05D004480 2.0e-11 72.4 78 56.4
CiPaw.11G121000 Carya illinoinensis HOM05D004051 ORTHO05D004480 2.7e-11 72.0 78 55.1
Prupe.2G311800 Prunus persica HOM05D004051 ORTHO05D004480 2.7e-11 72.0 68 57.4
Sopen08g030650 Solanum pennellii HOM05D004051 ORTHO05D004480 2.7e-11 72.0 85 51.8
VMungo0251G1927 Vigna mungo HOM05D000749 ORTHO05D005685 2.7e-11 72.0 80 55.0
GSVIVG01019535001 Vitis vinifera HOM05D004051 ORTHO05D004480 2.7e-11 72.0 77 53.2
TPR.G25572 Trifolium pratense HOM05D004051 ORTHO05D004480 3.5e-11 71.6 84 52.4
BolC7t44882H Brassica oleracea HOM05D004051 ORTHO05D004480 4.5e-11 71.2 77 50.6
Solyc08g082390.3 Solanum lycopersicum HOM05D004051 ORTHO05D004480 4.5e-11 71.2 84 48.8
BraA06t26423Z Brassica rapa HOM05D004051 ORTHO05D004480 5.9e-11 70.9 77 50.6
COL.COLO4_03427 Corchorus olitorius HOM05D004051 ORTHO05D004480 5.9e-11 70.9 156 37.2
Dinv37531 Davidia involucrata HOM05D004051 ORTHO05D004480 5.9e-11 70.9 78 51.3
THA.LOC104821369 Tarenaya hassleriana HOM05D004051 ORTHO05D004480 7.8e-11 70.5 79 49.4
A06p35000 Brassica napus HOM05D004051 ORTHO05D004480 1.0e-10 70.1 77 50.6
Haze_00874 Corylus avellana HOM05D021618 ORTHO05D004480 1.3e-10 69.7 58 65.5
Phvul.002G164300 Phaseolus vulgaris HOM05D004051 ORTHO05D004480 1.3e-10 69.7 80 50.0
PGSC0003DMG400012279 Solanum tuberosum HOM05D004051 ORTHO05D004480 1.3e-10 69.7 88 50.0
Atru.chr9.1978 Acer truncatum HOM05D004051 ORTHO05D004480 2.3e-10 68.9 77 58.4
Atru.chr9.1993 Acer truncatum HOM05D004051 ORTHO05D004480 2.3e-10 68.9 77 58.4
Cc08_g16090 Coffea canephora HOM05D004051 ORTHO05D004480 2.3e-10 68.9 84 48.8
LjContig00312_ERROPOS870357g0027890 Lotus japonicus HOM05D004051 ORTHO05D004480 2.3e-10 68.9 78 55.1
Ciclev10023430m.g Citrus clementina HOM05D004051 ORTHO05D004480 2.9e-10 68.6 77 57.1
Duzib084G0187 Durio zibethinus HOM05D000749 ORTHO05D005685 2.9e-10 68.6 78 56.4
ECA240G0536 Erigeron canadensis HOM05D004051 ORTHO05D004480 2.9e-10 68.6 85 45.9
Manes.02G009700 Manihot esculenta HOM05D004051 ORTHO05D004480 2.9e-10 68.6 78 59.0
Medtr8g099465 Medicago truncatula HOM05D004051 ORTHO05D004480 2.9e-10 68.6 78 48.7
Thecc.03G298400 Theobroma cacao HOM05D004051 ORTHO05D004480 2.9e-10 68.6 77 53.2
vmacro11468 Vaccinium macrocarpon HOM05D004051 ORTHO05D004480 3.8e-10 68.2 77 50.6
Haze_00184 Corylus avellana HOM05D021618 ORTHO05D004480 5.0e-10 67.8 58 63.8
Gohir.A12G236600 Gossypium hirsutum HOM05D004051 ORTHO05D004480 5.0e-10 67.8 78 57.7
Eucgr.C00183 Eucalyptus grandis HOM05D004051 ORTHO05D004480 6.6e-10 67.4 59 62.7
CSS0008906 Camellia sinensis var. sinensis HOM05D004051 ORTHO05D004480 8.6e-10 67.0 77 51.9
Ca_17505_v3 Cicer arietinum L. HOM05D000749 ORTHO05D005685 8.6e-10 67.0 88 47.7
Dinv38829 Davidia involucrata HOM05D004051 ORTHO05D004480 8.6e-10 67.0 78 52.6
Prupe.5G120400 Prunus persica HOM05D004051 ORTHO05D004480 8.6e-10 67.0 77 51.9
Oeu063517.1 Olea europaea HOM05D004051 ORTHO05D004480 1.1e-09 66.6 80 47.5
Potri.003G140300 Populus trichocarpa HOM05D004051 ORTHO05D004480 1.1e-09 66.6 78 53.8
QL02p030350 Quercus lobata HOM05D004051 ORTHO05D004480 1.5e-09 66.2 77 45.5
TWI81G0780 Tripterygium wilfordii HOM05D004051 ORTHO05D004480 1.5e-09 66.2 78 53.8
HanXRQChr03g0083481 Helianthus annuus HOM05D004051 ORTHO05D004480 1.9e-09 65.9 78 48.7
Sabra03G0101300 Salix brachista HOM05D004051 ORTHO05D004480 2.5e-09 65.5 94 46.8
A03p54820 Brassica napus HOM05D004051 ORTHO05D004480 3.3e-09 65.1 81 49.4
Actinidia22162 Actinidia chinensis HOM05D004051 ORTHO05D004480 4.3e-09 64.7 78 52.6
A01p15190 Brassica napus HOM05D004051 ORTHO05D004480 4.3e-09 64.7 79 49.4
BraA01t01457Z Brassica rapa HOM05D004051 ORTHO05D004480 4.3e-09 64.7 79 49.4
AUR62010843 Chenopodium quinoa HOM05D004051 ORTHO05D004480 5.6e-09 64.3 83 50.6
FvH4_5g04640 Fragaria vesca HOM05D004051 ORTHO05D004480 5.6e-09 64.3 80 50.0
FAN18G0508 Fragaria x ananassa HOM05D004051 ORTHO05D004480 5.6e-09 64.3 80 50.0
SalBow1G7115 Salvia bowleyana HOM05D004051 ORTHO05D004480 5.6e-09 64.3 81 51.9
Ah.12g052570 Amaranthus hybridus HOM05D000749 ORTHO05D005685 7.3e-09 63.9 88 50.0
BraA03t14549Z Brassica rapa HOM05D004051 ORTHO05D004480 7.3e-09 63.9 81 48.1
FAN18G2387 Fragaria x ananassa HOM05D004051 ORTHO05D004480 7.3e-09 63.9 79 50.6
unitig_88.g27640 Utricularia gibba HOM05D004051 ORTHO05D004480 7.3e-09 63.9 77 48.1
C07p53180 Brassica napus HOM05D004051 ORTHO05D004480 9.5e-09 63.5 81 46.9
PSO063G6907 Papaver somniferum HOM05D004051 ORTHO05D004480 9.5e-09 63.5 81 45.7
Peaxi162Scf00102g01842 Petunia axillaris HOM05D004051 ORTHO05D004480 9.5e-09 63.5 80 46.2
Sed0004965 Sechium edule HOM05D004051 ORTHO05D004480 9.5e-09 63.5 77 51.9
THA.LOC104815090 Tarenaya hassleriana HOM05D004051 ORTHO05D004480 9.5e-09 63.5 77 50.6
C01p19120 Brassica napus HOM05D004051 ORTHO05D004480 1.2e-08 63.2 79 46.8
PGR042G1109 Punica granatum HOM05D004051 ORTHO05D004480 1.6e-08 62.8 78 48.7
BolC1t01838H Brassica oleracea HOM05D004051 ORTHO05D004480 2.1e-08 62.4 79 46.8
BcaC09g50935 Brassica carinata HOM05D004051 ORTHO05D004480 2.8e-08 62.0 79 45.6
BcaNung04081 Brassica carinata HOM05D004051 ORTHO05D004480 2.8e-08 62.0 79 49.4
SalBow1G2120 Salvia bowleyana HOM05D004051 ORTHO05D004480 2.8e-08 62.0 81 50.6
CSS0023187 Camellia sinensis var. sinensis HOM05D004051 ORTHO05D004480 3.6e-08 61.6 78 47.4
MD06G1107300 Malus domestica HOM05D004051 ORTHO05D004480 3.6e-08 61.6 81 45.7
TWI15G0384 Tripterygium wilfordii HOM05D004051 ORTHO05D004480 3.6e-08 61.6 78 52.6
Hund14219 Selenicereus undatus HOM05D004051 ORTHO05D004480 4.7e-08 61.2 87 49.4
CARHR231280 Cardamine hirsuta HOM05D004051 ORTHO05D004480 6.1e-08 60.8 79 49.4
FAN13G0943 Fragaria x ananassa HOM05D004051 ORTHO05D004480 6.1e-08 60.8 82 47.6
Aa31LG6G7140 Aethionema arabicum HOM05D004051 ORTHO05D004480 8.0e-08 60.5 77 49.4
BcaNung01095 Brassica carinata HOM05D004051 ORTHO05D004480 8.0e-08 60.5 79 45.6
Thhalv10026982m.g Eutrema salsugineum HOM05D004051 ORTHO05D004480 8.0e-08 60.5 79 44.3
MD06G1107200 Malus domestica HOM05D004051 ORTHO05D004480 8.0e-08 60.5 78 46.2
BcaNung04241 Brassica carinata HOM05D004051 ORTHO05D004480 1.0e-07 60.1 77 46.8
DCAR_006488 Daucus carota HOM05D004051 ORTHO05D004480 1.0e-07 60.1 77 48.1
Zm00001eb383200 Zea mays HOM05D004051 ORTHO05D004480 1.0e-07 60.1 90 43.3
FAN08G0063 Fragaria x ananassa HOM05D004051 ORTHO05D004480 1.4e-07 59.7 82 46.3
RcHm_v2.0_Chr7g0194731 Rosa chinensis HOM05D004051 ORTHO05D004480 1.4e-07 59.7 82 46.3
AL7G29460 Arabidopsis lyrata HOM05D004051 ORTHO05D004480 1.8e-07 59.3 79 46.8
Sp7g21840 Schrenkiella parvula HOM05D004051 ORTHO05D004480 1.8e-07 59.3 77 46.8
ClCG01G001670 Citrullus lanatus HOM05D004051 ORTHO05D004480 3.0e-07 58.5 85 45.9
Migut.A00641 Erythranthe guttata HOM05D004051 ORTHO05D004480 3.0e-07 58.5 81 49.4
Sed0015186 Sechium edule HOM05D004051 ORTHO05D004480 3.0e-07 58.5 84 42.9
SGA_v2.0_scaffold96G29014 Striga asiatica HOM05D004051 ORTHO05D004480 4.0e-07 58.2 77 50.6
AT4G23885 Arabidopsis thaliana HOM05D004051 ORTHO05D004480 5.2e-07 57.8 79 49.4
Eucgr.E00869 Eucalyptus grandis HOM05D004051 ORTHO05D004480 5.2e-07 57.8 80 45.0
HanXRQChr13g0415281 Helianthus annuus HOM05D004051 ORTHO05D004480 5.2e-07 57.8 82 46.3
Os06g0530200 Oryza sativa ssp. japonica HOM05D004051 ORTHO05D004480 6.8e-07 57.4 91 42.9
Ah.07g197450 Amaranthus hybridus HOM05D004051 ORTHO05D004480 8.9e-07 57.0 79 45.6
Hund11389 Selenicereus undatus HOM05D004051 ORTHO05D004480 8.9e-07 57.0 84 42.9
EL10Ac5g12918 Beta vulgaris HOM05D004051 ORTHO05D004480 1.5e-06 56.2 79 45.6
Zm00001eb277870 Zea mays HOM05D004051 ORTHO05D004480 1.5e-06 56.2 92 40.2
Carub.0007s1723 Capsella rubella HOM05D004051 ORTHO05D004480 2.0e-06 55.8 77 48.1
AUR62006115 Chenopodium quinoa HOM05D004051 ORTHO05D004480 2.0e-06 55.8 41 68.3
FAN06G1557 Fragaria x ananassa HOM05D004051 ORTHO05D004480 2.6e-06 55.5 65 50.8
Solyc08g008330.3 Solanum lycopersicum HOM05D004051 ORTHO05D004480 2.6e-06 55.5 77 44.2
Sopen08g004210 Solanum pennellii HOM05D004051 ORTHO05D004480 2.6e-06 55.5 77 44.2
CsaV3_5G001830 Cucumis sativus L. HOM05D000749 ORTHO05D005685 3.4e-06 55.1 97 42.3
PGSC0003DMG400005791 Solanum tuberosum HOM05D004051 ORTHO05D004480 3.4e-06 55.1 82 42.7
Actinidia04200 Actinidia chinensis HOM05D004051 ORTHO05D004480 4.4e-06 54.7 77 46.8


User provided reference genes

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