Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG01G000430 Citrullus lanatus HOM05D005085 ORTHO05D006135 0.0e+00 1558.5 807 100.0
CsaV3_5G000500 Cucumis sativus L. HOM05D005085 ORTHO05D006135 0.0e+00 1491.1 816 89.3
MELO3C005886.2 Cucumis melo HOM05D005085 ORTHO05D006135 0.0e+00 1483.8 816 88.8
Sed0021974 Sechium edule HOM05D005085 ORTHO05D006135 0.0e+00 1369.0 791 85.0
Sed0008428 Sechium edule HOM05D005085 ORTHO05D006135 0.0e+00 1290.8 817 77.8
Haze_00215 Corylus avellana HOM05D005085 ORTHO05D006135 0.0e+00 1226.1 825 72.1
MD07G1288900 Malus domestica HOM05D005085 ORTHO05D006135 0.0e+00 1219.5 817 72.0
QL09p009347 Quercus lobata HOM05D005085 ORTHO05D006135 0.0e+00 1212.6 816 71.8
Prupe.2G310400 Prunus persica HOM05D005085 ORTHO05D006135 0.0e+00 1207.2 820 72.2
GSVIVG01038548001 Vitis vinifera HOM05D005085 ORTHO05D006135 0.0e+00 1202.6 795 72.8
Cfa016227 Carpinus fangiana HOM05D005085 ORTHO05D006135 0.0e+00 1192.2 819 70.7
Ciclev10018947m.g Citrus clementina HOM05D005085 ORTHO05D006135 0.0e+00 1191.8 817 70.6
COL.COLO4_16758 Corchorus olitorius HOM05D005085 ORTHO05D006135 0.0e+00 1191.8 816 70.8
CSS0032106 Camellia sinensis var. sinensis HOM05D005085 ORTHO05D006135 0.0e+00 1181.4 817 69.3
CiPaw.05G196500 Carya illinoinensis HOM05D005085 ORTHO05D006135 0.0e+00 1180.6 819 69.7
Atru.chr12.2188 Acer truncatum HOM05D005085 ORTHO05D006135 0.0e+00 1179.9 817 69.3
FvH4_7g31630 Fragaria vesca HOM05D005085 ORTHO05D006135 0.0e+00 1179.1 817 69.8
FAN06G1404 Fragaria x ananassa HOM05D005085 ORTHO05D006135 0.0e+00 1179.1 817 69.8
Actinidia08648 Actinidia chinensis HOM05D005085 ORTHO05D006135 0.0e+00 1176.4 817 69.2
Thecc.03G198500 Theobroma cacao HOM05D005085 ORTHO05D006135 0.0e+00 1176.0 818 69.4
FAN03G3191 Fragaria x ananassa HOM05D005085 ORTHO05D006135 0.0e+00 1174.8 817 69.6
Glyma.06G128600 Glycine max HOM05D005085 ORTHO05D006135 0.0e+00 1174.8 810 69.3
FAN06G4927 Fragaria x ananassa HOM05D005085 ORTHO05D006135 0.0e+00 1170.2 818 69.6
RcHm_v2.0_Chr1g0380701 Rosa chinensis HOM05D005085 ORTHO05D006135 0.0e+00 1167.9 817 69.4
Hma1.2p1_0404F.1_g145430 Hydrangea macrophylla HOM05D005085 ORTHO05D006135 0.0e+00 1167.1 817 69.0
TAR375G0122 Trochodendron aralioides HOM05D005085 ORTHO05D006135 0.0e+00 1166.0 814 68.2
Lj1g0017393 Lotus japonicus HOM05D005085 ORTHO05D006135 0.0e+00 1160.6 810 68.5
FAN01G1488 Fragaria x ananassa HOM05D005085 ORTHO05D006135 0.0e+00 1159.4 818 68.8
Duzib068G1071 Durio zibethinus HOM05D005085 ORTHO05D006135 0.0e+00 1158.3 806 69.2
TWI23G0498 Tripterygium wilfordii HOM05D005085 ORTHO05D006135 0.0e+00 1157.5 822 68.0
CANSAT21G1132 Cannabis sativa HOM05D005085 ORTHO05D006135 0.0e+00 1154.4 817 69.2
Potri.015G013400 Populus trichocarpa HOM05D005085 ORTHO05D006135 0.0e+00 1152.1 818 68.2
MBI06_g46249_MAGBIO Magnolia biondii HOM05D005085 ORTHO05D006135 0.0e+00 1151.0 820 67.9
VMungo1309G2271 Vigna mungo HOM05D005085 ORTHO05D006135 0.0e+00 1149.8 810 67.8
Eucgr.K00374 Eucalyptus grandis HOM05D005085 ORTHO05D006135 0.0e+00 1147.5 817 67.9
Cc02_g01600 Coffea canephora HOM05D005085 ORTHO05D006135 0.0e+00 1145.2 795 68.7
Potri.012G014900 Populus trichocarpa HOM05D005085 ORTHO05D006135 0.0e+00 1144.8 818 67.5
vmacro06534 Vaccinium macrocarpon HOM05D005085 ORTHO05D006135 0.0e+00 1144.4 818 67.4
CSS0012677 Camellia sinensis var. sinensis HOM05D005085 ORTHO05D006135 0.0e+00 1142.9 817 68.1
Sabra15G0010900 Salix brachista HOM05D005085 ORTHO05D006135 0.0e+00 1142.9 818 67.4
Lalb_Chr08g0240261 Lupinus albus HOM05D005085 ORTHO05D006135 0.0e+00 1141.3 810 67.9
Phvul.009G052800 Phaseolus vulgaris HOM05D005085 ORTHO05D006135 0.0e+00 1138.6 810 67.2
TAR629G3137 Trochodendron aralioides HOM05D005085 ORTHO05D006135 0.0e+00 1137.1 788 69.0
PGR142G4232 Punica granatum HOM05D005085 ORTHO05D006135 0.0e+00 1136.7 817 66.5
arahy.Tifrunner.gnm1.ann1.T9I2S7 Arachis hypogaea HOM05D005085 ORTHO05D006135 0.0e+00 1134.8 810 66.8
arahy.Tifrunner.gnm1.ann1.ZR5QI2 Arachis hypogaea HOM05D005085 ORTHO05D006135 0.0e+00 1133.6 810 66.7
Manes.01G183000 Manihot esculenta HOM05D005085 ORTHO05D006135 0.0e+00 1131.3 807 67.8
Sabra12G0017000 Salix brachista HOM05D005085 ORTHO05D006135 0.0e+00 1131.3 808 67.7
Cpa.g.sc3.82 Carica papaya HOM05D005085 ORTHO05D006135 0.0e+00 1127.9 836 66.4
Nitab4.5_0005599g0010 Nicotiana tabacum HOM05D005085 ORTHO05D006135 0.0e+00 1124.4 794 66.9
Nitab4.5_0010146g0010 Nicotiana tabacum HOM05D005085 ORTHO05D006135 0.0e+00 1122.8 794 67.1
Rhsim03G0208500 Rhododendron simsii HOM05D005085 ORTHO05D006135 0.0e+00 1122.5 818 66.3
Sopen03g023080 Solanum pennellii HOM05D005085 ORTHO05D006135 0.0e+00 1121.3 817 65.9
Psat5g078640 Pisum sativum HOM05D005085 ORTHO05D006135 0.0e+00 1117.4 810 66.0
PGSC0003DMG400009126 Solanum tuberosum HOM05D005085 ORTHO05D006135 0.0e+00 1117.4 795 66.8
Solyc03g083330.3 Solanum lycopersicum HOM05D005085 ORTHO05D006135 0.0e+00 1112.4 817 65.4
MSTRG.27029 Avicennia marina HOM05D005085 ORTHO05D006135 0.0e+00 1111.3 815 65.4
Medtr3g091420 Medicago truncatula HOM05D005085 ORTHO05D006135 0.0e+00 1107.4 799 66.0
Lju170A22T15 Lonicera japonica HOM05D005085 ORTHO05D006135 0.0e+00 1105.9 817 65.9
FAN10G0692 Fragaria x ananassa HOM05D005085 ORTHO05D006135 0.0e+00 1104.0 815 66.1
FAN10G4178 Fragaria x ananassa HOM05D005085 ORTHO05D006135 0.0e+00 1104.0 815 66.1
EL10Ac3g05287 Beta vulgaris HOM05D005085 ORTHO05D006135 0.0e+00 1102.8 819 65.9
Gohir.A05G414800 Gossypium hirsutum HOM05D005085 ORTHO05D006135 0.0e+00 1101.3 817 67.1
CAN.G968.3 Capsicum annuum HOM05D005085 ORTHO05D006135 0.0e+00 1100.9 817 64.7
Nn1g00241 Nelumbo nucifera HOM05D005085 ORTHO05D006135 0.0e+00 1099.0 820 65.4
Ah.07g205630 Amaranthus hybridus HOM05D005085 ORTHO05D006135 0.0e+00 1092.0 828 64.6
PSO384G0679 Papaver somniferum HOM05D005085 ORTHO05D006135 0.0e+00 1091.3 814 64.9
Migut.F01031 Erythranthe guttata HOM05D005085 ORTHO05D006135 0.0e+00 1088.2 809 65.3
Ca_16704_v3 Cicer arietinum L. HOM05D005085 ORTHO05D006135 0.0e+00 1086.2 811 64.7
TPR.G19373 Trifolium pratense HOM05D005085 ORTHO05D006135 0.0e+00 1085.1 841 62.9
Sc19g0000870 Simmondsia chinensis HOM05D005085 ORTHO05D006135 0.0e+00 1083.9 815 65.2
PSO135G0649 Papaver somniferum HOM05D005085 ORTHO05D006135 0.0e+00 1083.2 814 64.1
DCAR_008919 Daucus carota HOM05D005085 ORTHO05D006135 0.0e+00 1081.2 795 65.2
Duzib205G0228 Durio zibethinus HOM05D005085 ORTHO05D006135 0.0e+00 1080.5 742 70.1
SalBow4G0231 Salvia bowleyana HOM05D005085 ORTHO05D006135 0.0e+00 1080.1 815 64.4
Hund11663 Selenicereus undatus HOM05D005085 ORTHO05D006135 0.0e+00 1079.7 824 64.7
Gohir.1Z049319 Gossypium hirsutum HOM05D005085 ORTHO05D006135 0.0e+00 1079.3 817 66.1
Oeu060983.2 Olea europaea HOM05D005085 ORTHO05D006135 5.5e-312 1074.7 835 62.6
Oeu037073.1 Olea europaea HOM05D005085 ORTHO05D006135 8.3e-311 1070.1 794 64.6
Actinidia34217 Actinidia chinensis HOM05D005085 ORTHO05D006135 1.1e-307 1059.7 751 67.6
SGA_v2.0_scaffold192G40551 Striga asiatica HOM05D005085 ORTHO05D006135 1.5e-307 1059.3 811 63.5
ATR0602G298 Amborella trichopoda HOM05D005085 ORTHO05D006135 2.8e-306 1055.0 809 63.5
CDE04G2343 Ceratophyllum demersum HOM05D005085 ORTHO05D006135 1.5e-304 1049.3 783 65.0
Migut.F00216 Erythranthe guttata HOM05D005085 ORTHO05D006135 1.7e-303 1045.8 791 63.7
Nn3g18991 Nelumbo nucifera HOM05D005085 ORTHO05D006135 1.2e-301 1039.6 803 63.3
THA.LOC104814927 Tarenaya hassleriana HOM05D005085 ORTHO05D006135 1.1e-299 1033.1 796 63.4
Carub.0006s2201 Capsella rubella HOM05D005085 ORTHO05D006135 4.8e-298 1027.7 782 64.5
AT5G24260 Arabidopsis thaliana HOM05D005085 ORTHO05D006135 1.2e-296 1023.1 787 64.0
Dinv35331 Davidia involucrata HOM05D005085 ORTHO05D006135 1.5e-296 1022.7 701 70.2
Aa31LG11G3490 Aethionema arabicum HOM05D005085 ORTHO05D006135 1.0e-295 1020.0 795 61.8
AL6G35670 Arabidopsis lyrata HOM05D005085 ORTHO05D006135 6.5e-295 1017.3 782 63.9
HanXRQChr04g0100521 Helianthus annuus HOM05D005085 ORTHO05D006135 1.4e-294 1016.1 807 60.2
Lsat_1_v5_gn_2_136081 Lactuca sativa HOM05D005085 ORTHO05D006135 2.5e-294 1015.4 785 62.3
Sp2g23110 Schrenkiella parvula HOM05D005085 ORTHO05D006135 2.7e-293 1011.9 792 63.0
Thhalv10003701m.g Eutrema salsugineum HOM05D005085 ORTHO05D006135 1.9e-291 1005.7 781 63.8
BcaC04g23536 Brassica carinata HOM05D005085 ORTHO05D006135 7.4e-291 1003.8 791 61.9
BolC9t53643H Brassica oleracea HOM05D005085 ORTHO05D006135 7.4e-291 1003.8 791 61.9
A09p06550 Brassica napus HOM05D005085 ORTHO05D006135 1.6e-290 1002.7 785 62.4
C09p07310 Brassica napus HOM05D005085 ORTHO05D006135 6.3e-290 1000.7 791 61.9
Aqoxy7G00083 Aquilegia oxysepala HOM05D005085 ORTHO05D006135 1.8e-289 999.2 819 60.3
BraA09t36300Z Brassica rapa HOM05D005085 ORTHO05D006135 9.1e-289 996.9 785 62.2
BcaB04g19831 Brassica carinata HOM05D005085 ORTHO05D006135 4.5e-288 994.6 791 61.7
Zm00001eb237090 Zea mays HOM05D005085 ORTHO05D006135 6.1e-285 984.2 837 58.2
Peaxi162Scf00717g00321 Petunia axillaris HOM05D005085 ORTHO05D006135 5.1e-284 981.1 805 60.1
AUR62019399 Chenopodium quinoa HOM05D005085 ORTHO05D006135 4.4e-283 978.0 814 60.2
SMO334G0022 Selaginella moellendorffii HOM05D005085 ORTHO05D006135 5.7e-283 977.6 795 59.5
SEGI_15573 Sequoiadendron giganteum HOM05D005085 ORTHO05D006135 1.1e-281 973.4 795 59.2
ECA238G3029 Erigeron canadensis HOM05D005085 ORTHO05D006135 3.3e-275 951.8 777 60.5
Mapoly0005s0073 Marchantia polymorpha HOM05D005085 ORTHO05D006135 7.4e-275 950.7 820 55.9
Manes.02G143100 Manihot esculenta HOM05D005085 ORTHO05D006135 1.8e-268 929.5 636 69.8
AUR62006093 Chenopodium quinoa HOM05D005085 ORTHO05D006135 1.1e-265 920.2 665 66.0
Pp3c8_9480 Physcomitrium patens HOM05D005085 ORTHO05D006135 1.6e-264 916.4 801 56.4
Pp3c3_30620 Physcomitrium patens HOM05D005085 ORTHO05D006135 2.7e-264 915.6 818 54.9
Glyma.04G236000 Glycine max HOM05D005085 ORTHO05D006135 3.8e-263 911.8 636 67.9
MBI06_g41630_MAGBIO Magnolia biondii HOM05D005085 ORTHO05D006135 6.8e-252 874.4 753 59.2
Gorai.012G002400 Gossypium raimondii HOM05D005085 ORTHO05D006135 2.6e-251 872.5 589 70.6
Gohir.D04G001366 Gossypium hirsutum HOM05D005085 ORTHO05D006135 2.3e-236 822.8 583 68.1
Os02g0290600 Oryza sativa ssp. japonica HOM05D005085 ORTHO05D006135 6.8e-236 821.2 637 59.8
AagrBONN_evm.TU.Sc2ySwM_368.3337 Anthoceros agrestis HOM05D005085 ORTHO05D006135 8.3e-226 787.7 598 61.0
SEGI_29845 Sequoiadendron giganteum HOM05D005085 ORTHO05D006135 1.4e-225 786.9 588 62.6
Oeu060984.1 Olea europaea HOM05D005085 ORTHO05D006135 7.1e-225 784.6 611 62.5
CARHR189270 Cardamine hirsuta HOM05D005085 ORTHO05D006135 3.5e-208 729.2 607 60.3
CBR_g26168 Chara braunii HOM05D005085 ORTHO05D006135 4.9e-194 682.2 641 51.6
SEGI_31502 Sequoiadendron giganteum HOM05D005085 ORTHO05D006135 3.2e-193 679.5 639 53.4
HPP92_002922 Vanilla planifolia HOM05D005085 ORTHO05D006135 3.7e-189 666.0 590 55.4
PRCOL_00001990 Prasinoderma coloniale HOM05D005085 ORTHO05D006135 5.5e-185 652.1 826 43.1
MCO02G195 Micromonas commoda HOM05D005085 ORTHO05D006135 3.8e-138 496.5 820 36.6
SEGI_36069 Sequoiadendron giganteum HOM05D005085 ORTHO05D006135 6.8e-103 379.4 411 47.9
CARHR189280 Cardamine hirsuta HOM05D005085 ORTHO05D006135 3.2e-76 290.8 187 72.2
BcaB04g18355 Brassica carinata HOM05D005085 ORTHO05D006135 1.0e-66 259.2 223 60.1
Lj1A1019T47 Lonicera japonica HOM05D005085 ORTHO05D006135 7.9e-51 206.5 302 42.4
HPP92_028640 Vanilla planifolia HOM05D005085 ORTHO05D006135 1.6e-38 165.6 152 60.5
Cfa024188 Carpinus fangiana HOM05D005085 ORTHO05D006135 4.5e-38 164.1 647 22.9
Cfa026592 Carpinus fangiana HOM05D005085 ORTHO05D006135 6.8e-34 150.2 659 21.2
SEGI_01874 Sequoiadendron giganteum HOM05D005085 ORTHO05D006135 8.5e-29 133.3 117 52.1
Lj1C1017G3 Lonicera japonica HOM05D005085 ORTHO05D006135 1.2e-25 122.9 281 31.7
HPP92_002923 Vanilla planifolia HOM05D005085 ORTHO05D006135 1.5e-25 122.5 91 65.9
Ah.03g137970 Amaranthus hybridus HOM05D005085 ORTHO05D006135 5.4e-23 114.0 144 50.0
HPP92_002921 Vanilla planifolia HOM05D005085 ORTHO05D006135 5.2e-18 97.4 52 82.7
Gohir.D02G140050 Gossypium hirsutum HOM05D003289 ORTHO05D004594 2.6e-17 95.1 57 78.9
Gorai.005G156700 Gossypium raimondii HOM05D003289 ORTHO05D004594 4.4e-17 94.4 57 78.9
HPP92_028641 Vanilla planifolia HOM05D005085 ORTHO05D006135 4.9e-16 90.9 120 43.3
MD01G1219200 Malus domestica HOM05D005085 ORTHO05D006135 1.1e-12 79.7 64 57.8
Pp3c20_7850 Physcomitrium patens HOM05D003475 ORTHO05D026663 3.3e-12 78.2 274 21.5
CBR_g47 Chara braunii HOM05D003117 ORTHO05D003612 3.6e-11 74.7 220 26.8
Lj1C1016T12 Lonicera japonica HOM05D005085 ORTHO05D006135 4.7e-11 74.3 138 40.6
MCO08G067 Micromonas commoda HOM05D003117 ORTHO05D003612 4.0e-10 71.2 215 25.6
Lj6C653G14 Lonicera japonica HOM05D003117 ORTHO05D003612 6.4e-08 63.9 249 22.9
Gohir.D10G185350 Gossypium hirsutum HOM05D005085 ORTHO05D006135 1.9e-07 62.4 36 72.2
Gorai.011G207800 Gossypium raimondii HOM05D005085 ORTHO05D006135 1.9e-07 62.4 36 72.2
Lj1C1016T11 Lonicera japonica HOM05D005085 ORTHO05D006135 1.9e-07 62.4 38 68.4
unitig_748.g8538 Utricularia gibba HOM05D005085 ORTHO05D006135 5.4e-07 60.8 39 59.0
AUR62003125 Chenopodium quinoa HOM05D003117 ORTHO05D003612 7.0e-07 60.5 239 25.5
Gorai.004G093300 Gossypium raimondii HOM05D001074 ORTHO05D001188 9.2e-07 60.1 34 73.5
AUR62007946 Chenopodium quinoa HOM05D003117 ORTHO05D003612 2.7e-06 58.5 239 25.1
DCAR_027265 Daucus carota HOM05D003117 ORTHO05D003612 7.8e-06 57.0 226 24.8


User provided reference genes

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