Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG01G000400 Citrullus lanatus HOM05D002242 ORTHO05D002275 2.4e-87 325.5 164 100.0
Sed0003282 Sechium edule HOM05D002242 ORTHO05D002275 3.5e-46 188.7 155 69.0
MELO3C005889.2 Cucumis melo HOM05D002242 ORTHO05D002275 7.5e-41 171.0 164 67.1
CsaV3_5G000440 Cucumis sativus L. HOM05D002242 ORTHO05D002275 1.6e-35 153.3 171 61.4
Gohir.A12G249200 Gossypium hirsutum HOM05D002242 ORTHO05D002275 2.8e-19 99.4 188 43.6
Gorai.008G268100 Gossypium raimondii HOM05D002242 ORTHO05D002275 6.8e-18 94.7 188 42.6
Gohir.D12G250000 Gossypium hirsutum HOM05D002242 ORTHO05D002275 1.2e-17 94.0 188 42.0
Cfa016239 Carpinus fangiana HOM05D002242 ORTHO05D002275 9.9e-17 90.9 192 43.8
Prupe.2G309000 Prunus persica HOM05D002242 ORTHO05D002275 1.3e-16 90.5 192 41.7
QL09p008666 Quercus lobata HOM05D002242 ORTHO05D002275 1.3e-16 90.5 180 41.1
Haze_00202 Corylus avellana HOM05D002242 ORTHO05D002275 4.9e-16 88.6 197 42.1
Duzib205G1627 Durio zibethinus HOM05D002242 ORTHO05D002275 4.9e-16 88.6 185 42.2
PGR142G4389 Punica granatum HOM05D002242 ORTHO05D002275 1.9e-15 86.7 115 52.2
Thecc.03G200400 Theobroma cacao HOM05D002242 ORTHO05D002275 1.9e-15 86.7 190 40.0
RcHm_v2.0_Chr1g0380431 Rosa chinensis HOM05D002242 ORTHO05D002275 1.6e-14 83.6 169 40.2
FvH4_7g31360 Fragaria vesca HOM05D002242 ORTHO05D002275 3.5e-14 82.4 124 47.6
FAN06G3788 Fragaria x ananassa HOM05D002242 ORTHO05D002275 3.5e-14 82.4 124 47.6
Duzib084G0563 Durio zibethinus HOM05D002242 ORTHO05D002275 4.6e-14 82.0 183 41.5
Potri.015G011900 Populus trichocarpa HOM05D002242 ORTHO05D002275 1.0e-13 80.9 180 41.1
Manes.02G144300 Manihot esculenta HOM05D002242 ORTHO05D002275 1.3e-13 80.5 187 41.2
Dinv29268 Davidia involucrata HOM05D002242 ORTHO05D002275 1.7e-13 80.1 184 39.1
FAN03G3456 Fragaria x ananassa HOM05D002242 ORTHO05D002275 1.7e-13 80.1 124 47.6
Manes.01G184600 Manihot esculenta HOM05D002242 ORTHO05D002275 2.3e-13 79.7 194 39.2
Hma1.2p1_1587F.1_g292270 Hydrangea macrophylla HOM05D002242 ORTHO05D002275 3.0e-13 79.3 159 44.7
FAN01G0248 Fragaria x ananassa HOM05D002242 ORTHO05D002275 3.9e-13 79.0 124 46.8
Hma1.2p1_0404F.1_g145270 Hydrangea macrophylla HOM05D002242 ORTHO05D002275 3.9e-13 79.0 159 44.7
MD07G1286900 Malus domestica HOM05D002242 ORTHO05D002275 5.1e-13 78.6 179 40.8
TAR425G0001 Trochodendron aralioides HOM05D002242 ORTHO05D002275 6.6e-13 78.2 88 54.5
vmacro06390 Vaccinium macrocarpon HOM05D002242 ORTHO05D002275 8.7e-13 77.8 100 52.0
CiPaw.06G045500 Carya illinoinensis HOM05D002242 ORTHO05D002275 1.1e-12 77.4 197 41.6
Sc25g0000930 Simmondsia chinensis HOM05D002242 ORTHO05D002275 1.9e-12 76.6 112 47.3
Ciclev10021848m.g Citrus clementina HOM05D002242 ORTHO05D002275 2.5e-12 76.3 114 51.8
Actinidia08657 Actinidia chinensis HOM05D002242 ORTHO05D002275 3.3e-12 75.9 133 45.1
TAR636G3588 Trochodendron aralioides HOM05D002242 ORTHO05D002275 5.6e-12 75.1 98 57.1
FAN06G4446 Fragaria x ananassa HOM05D002242 ORTHO05D002275 1.2e-11 73.9 124 46.0
MD01G1217700 Malus domestica HOM05D002242 ORTHO05D002275 2.1e-11 73.2 158 41.1
Nn1g00284 Nelumbo nucifera HOM05D002242 ORTHO05D002275 2.1e-11 73.2 180 41.1
PSO478G1176 Papaver somniferum HOM05D002242 ORTHO05D002275 2.1e-11 73.2 137 46.0
PSO782G1347 Papaver somniferum HOM05D002242 ORTHO05D002275 2.1e-11 73.2 137 46.0
Sabra15G0009600 Salix brachista HOM05D002242 ORTHO05D002275 2.1e-11 73.2 178 39.9
GSVIVG01027167001 Vitis vinifera HOM05D002242 ORTHO05D002275 2.1e-11 73.2 147 42.2
Dinv34219 Davidia involucrata HOM05D002242 ORTHO05D002275 3.6e-11 72.4 92 56.5
TWI23G0291 Tripterygium wilfordii HOM05D002242 ORTHO05D002275 6.2e-11 71.6 100 48.0
COL.COLO4_16773 Corchorus olitorius HOM05D002242 ORTHO05D002275 8.1e-11 71.2 202 38.1
Rhsim03G0209500 Rhododendron simsii HOM05D002242 ORTHO05D002275 1.1e-10 70.9 89 55.1
EL10Ac3g05266 Beta vulgaris HOM05D002242 ORTHO05D002275 2.4e-10 69.7 101 48.5
CANSAT56G1040 Cannabis sativa HOM05D002242 ORTHO05D002275 3.1e-10 69.3 94 55.3
Psat6g034840 Pisum sativum HOM05D002242 ORTHO05D002275 3.1e-10 69.3 174 37.9
Aqoxy4G02751 Aquilegia oxysepala HOM05D002242 ORTHO05D002275 4.0e-10 68.9 153 42.5
DCAR_025263 Daucus carota HOM05D002242 ORTHO05D002275 4.0e-10 68.9 104 51.0
CsaV3_3G019790 Cucumis sativus L. HOM05D002242 ORTHO05D002275 5.2e-10 68.6 191 36.1
Thecc.01G340500 Theobroma cacao HOM05D002242 ORTHO05D002275 5.2e-10 68.6 116 46.6
TWI59G0079 Tripterygium wilfordii HOM05D002242 ORTHO05D002275 5.2e-10 68.6 110 42.7
Actinidia07972 Actinidia chinensis HOM05D002242 ORTHO05D002275 6.9e-10 68.2 125 44.0
Actinidia28112 Actinidia chinensis HOM05D002242 ORTHO05D002275 6.9e-10 68.2 124 43.5
Cc02_g39550 Coffea canephora HOM05D002242 ORTHO05D002275 6.9e-10 68.2 114 46.5
Gohir.A11G097800 Gossypium hirsutum HOM05D002242 ORTHO05D002275 6.9e-10 68.2 116 47.4
Oeu007879.1 Olea europaea HOM05D002242 ORTHO05D002275 6.9e-10 68.2 105 45.7
GSVIVG01038561001 Vitis vinifera HOM05D002242 ORTHO05D002275 6.9e-10 68.2 170 38.2
Lalb_Chr17g0342761 Lupinus albus HOM05D002242 ORTHO05D002275 9.0e-10 67.8 92 52.2
Oeu043226.1 Olea europaea HOM05D002242 ORTHO05D002275 9.0e-10 67.8 94 46.8
CiPaw.05G197700 Carya illinoinensis HOM05D002242 ORTHO05D002275 1.2e-09 67.4 67 56.7
Haze_15674 Corylus avellana HOM05D002242 ORTHO05D002275 1.2e-09 67.4 116 44.0
ClCG05G008990 Citrullus lanatus HOM05D002242 ORTHO05D002275 1.5e-09 67.0 189 34.9
Gohir.D03G115200 Gossypium hirsutum HOM05D002242 ORTHO05D002275 1.5e-09 67.0 174 39.7
Gorai.003G121500 Gossypium raimondii HOM05D002242 ORTHO05D002275 1.5e-09 67.0 174 39.7
Glyma.16G023500 Glycine max HOM05D002242 ORTHO05D002275 2.0e-09 66.6 121 44.6
CiPaw.01G077500 Carya illinoinensis HOM05D002242 ORTHO05D002275 3.4e-09 65.9 105 50.5
Nitab4.5_0007888g0030 Nicotiana tabacum HOM05D002242 ORTHO05D002275 3.4e-09 65.9 88 52.3
SalBow5G1307 Salvia bowleyana HOM05D002242 ORTHO05D002275 3.4e-09 65.9 102 44.1
ATR0602G287 Amborella trichopoda HOM05D002242 ORTHO05D002275 4.4e-09 65.5 103 45.6
C07p55720 Brassica napus HOM05D002242 ORTHO05D002275 4.4e-09 65.5 92 52.2
Sed0027126 Sechium edule HOM05D002242 ORTHO05D002275 4.4e-09 65.5 142 43.7
Peaxi162Scf00087g02228 Petunia axillaris HOM05D002242 ORTHO05D002275 5.8e-09 65.1 112 45.5
Hma1.2p1_0101F.1_g049310 Hydrangea macrophylla HOM05D002242 ORTHO05D002275 7.6e-09 64.7 131 44.3
Manes.05G021600 Manihot esculenta HOM05D002242 ORTHO05D002275 7.6e-09 64.7 111 46.8
TWI14G0218 Tripterygium wilfordii HOM05D002242 ORTHO05D002275 7.6e-09 64.7 168 38.1
TWI39G0876 Tripterygium wilfordii HOM05D002242 ORTHO05D002275 7.6e-09 64.7 145 41.4
Dinv37328 Davidia involucrata HOM05D002242 ORTHO05D002275 9.9e-09 64.3 94 47.9
BolC7t46052H Brassica oleracea HOM05D002242 ORTHO05D002275 1.3e-08 63.9 92 51.1
SGA_v2.0_scaffold44G16810 Striga asiatica HOM05D002242 ORTHO05D002275 1.3e-08 63.9 91 50.5
THA.LOC104811912 Tarenaya hassleriana HOM05D002242 ORTHO05D002275 1.3e-08 63.9 196 35.7
MELO3C008501.2 Cucumis melo HOM05D002242 ORTHO05D002275 1.7e-08 63.5 194 33.5
Hma1.2p1_0390F.1_g142630 Hydrangea macrophylla HOM05D002242 ORTHO05D002275 1.7e-08 63.5 95 45.3
SGA_v2.0_scaffold232G43549 Striga asiatica HOM05D002242 ORTHO05D002275 1.7e-08 63.5 144 40.3
CANSAT21G1534 Cannabis sativa HOM05D002242 ORTHO05D002275 2.2e-08 63.2 130 43.8
Dinv32603 Davidia involucrata HOM05D002242 ORTHO05D002275 2.2e-08 63.2 113 45.1
Thhalv10014570m.g Eutrema salsugineum HOM05D002242 ORTHO05D002275 2.2e-08 63.2 96 51.0
Gohir.A12G113100 Gossypium hirsutum HOM05D002242 ORTHO05D002275 2.2e-08 63.2 118 44.1
Gorai.008G126300 Gossypium raimondii HOM05D002242 ORTHO05D002275 2.2e-08 63.2 139 41.7
SalBow2G3365 Salvia bowleyana HOM05D002242 ORTHO05D002275 2.9e-08 62.8 96 51.0
Actinidia20250 Actinidia chinensis HOM05D002242 ORTHO05D002275 3.8e-08 62.4 131 42.7
AL8G27650 Arabidopsis lyrata HOM05D002242 ORTHO05D002275 3.8e-08 62.4 143 38.5
MSTRG.8647 Avicennia marina HOM05D002242 ORTHO05D002275 3.8e-08 62.4 119 43.7
Oeu060992.1 Olea europaea HOM05D002242 ORTHO05D002275 3.8e-08 62.4 100 48.0
Prupe.6G127900 Prunus persica HOM05D002242 ORTHO05D002275 3.8e-08 62.4 68 54.4
Ah.05g179410 Amaranthus hybridus HOM05D002242 ORTHO05D002275 4.9e-08 62.0 134 40.3
Ca_12789_v3 Cicer arietinum L. HOM05D002242 ORTHO05D002275 4.9e-08 62.0 173 35.3
Glyma.07G054700 Glycine max HOM05D002242 ORTHO05D002275 4.9e-08 62.0 123 42.3
Ca_12786_v3 Cicer arietinum L. HOM05D002242 ORTHO05D002275 6.4e-08 61.6 174 35.1
Duzib138G1576 Durio zibethinus HOM05D002242 ORTHO05D002275 6.4e-08 61.6 94 46.8
MD01G1083500 Malus domestica HOM05D002242 ORTHO05D002275 6.4e-08 61.6 101 49.5
Carub.0008s1322 Capsella rubella HOM05D002242 ORTHO05D002275 8.4e-08 61.2 144 37.5
DCAR_005401 Daucus carota HOM05D002242 ORTHO05D002275 8.4e-08 61.2 108 43.5
Eucgr.H01540 Eucalyptus grandis HOM05D002242 ORTHO05D002275 8.4e-08 61.2 160 37.5
Eucgr.H01594 Eucalyptus grandis HOM05D002242 ORTHO05D002275 8.4e-08 61.2 160 37.5
Gohir.A03G051900 Gossypium hirsutum HOM05D002242 ORTHO05D002275 8.4e-08 61.2 174 39.1
Lj3g0010764 Lotus japonicus HOM05D002242 ORTHO05D002275 8.4e-08 61.2 121 44.6
Sc01g0002560 Simmondsia chinensis HOM05D002242 ORTHO05D002275 8.4e-08 61.2 195 34.9
BcaNung01619 Brassica carinata HOM05D002242 ORTHO05D002275 1.1e-07 60.8 154 42.2
Migut.N01536 Erythranthe guttata HOM05D002242 ORTHO05D002275 1.1e-07 60.8 109 42.2
Gohir.D11G102500 Gossypium hirsutum HOM05D002242 ORTHO05D002275 1.1e-07 60.8 116 44.0
MBI06_g38007_MAGBIO Magnolia biondii HOM05D002242 ORTHO05D002275 1.1e-07 60.8 85 48.2
Peaxi162Scf00345g00124 Petunia axillaris HOM05D002242 ORTHO05D002275 1.1e-07 60.8 111 45.0
QL08p045696 Quercus lobata HOM05D002242 ORTHO05D002275 1.1e-07 60.8 90 48.9
Atru.chr5.685 Acer truncatum HOM05D002242 ORTHO05D002275 1.4e-07 60.5 120 41.7
BcaB05g22000 Brassica carinata HOM05D002242 ORTHO05D002275 1.4e-07 60.5 96 51.0
Lsat_1_v5_gn_9_49640 Lactuca sativa HOM05D002242 ORTHO05D002275 1.4e-07 60.5 105 42.9
Sp6g15180 Schrenkiella parvula HOM05D002242 ORTHO05D002275 1.4e-07 60.5 196 36.7
A01p19250 Brassica napus HOM05D002242 ORTHO05D002275 1.9e-07 60.1 160 37.5
Gorai.007G109600 Gossypium raimondii HOM05D002242 ORTHO05D002275 1.9e-07 60.1 96 46.9
Nitab4.5_0005514g0010 Nicotiana tabacum HOM05D002242 ORTHO05D002275 1.9e-07 60.1 88 50.0
Oeu041061.1 Olea europaea HOM05D002242 ORTHO05D002275 1.9e-07 60.1 114 47.4
Gohir.D12G116600 Gossypium hirsutum HOM05D002242 ORTHO05D002275 2.4e-07 59.7 145 40.0
Prupe.2G190500 Prunus persica HOM05D002242 ORTHO05D002275 2.4e-07 59.7 108 47.2
DCAR_020326 Daucus carota HOM05D002242 ORTHO05D002275 3.2e-07 59.3 102 44.1
Potri.012G016700 Populus trichocarpa HOM05D002242 ORTHO05D002275 3.2e-07 59.3 152 38.2
AT5G53030 Arabidopsis thaliana HOM05D002242 ORTHO05D002275 4.2e-07 58.9 198 33.8
C02p18780 Brassica napus HOM05D002242 ORTHO05D002275 5.4e-07 58.5 210 37.6
BolC2t08023H Brassica oleracea HOM05D002242 ORTHO05D002275 5.4e-07 58.5 210 37.6
Lsat_1_v5_gn_4_33660 Lactuca sativa HOM05D002242 ORTHO05D002275 5.4e-07 58.5 95 46.3
MD07G1152200 Malus domestica HOM05D002242 ORTHO05D002275 5.4e-07 58.5 104 50.0
Oeu004983.1 Olea europaea HOM05D002242 ORTHO05D002275 5.4e-07 58.5 99 49.5
Peaxi162Scf00740g00136 Petunia axillaris HOM05D002242 ORTHO05D002275 5.4e-07 58.5 95 46.3
Ah.13g070390 Amaranthus hybridus HOM05D002242 ORTHO05D002275 7.1e-07 58.2 131 39.7
MSTRG.28269 Avicennia marina HOM05D002242 ORTHO05D002275 7.1e-07 58.2 110 42.7
C01p24200 Brassica napus HOM05D002242 ORTHO05D002275 7.1e-07 58.2 160 37.5
Potri.002G172900 Populus trichocarpa HOM05D002242 ORTHO05D002275 7.1e-07 58.2 93 44.1
Nitab4.5_0001763g0050 Nicotiana tabacum HOM05D002242 ORTHO05D002275 9.3e-07 57.8 104 46.2
VMungo0647G2336 Vigna mungo HOM05D002242 ORTHO05D002275 9.3e-07 57.8 150 38.7
BcaC09g50536 Brassica carinata HOM05D002242 ORTHO05D002275 1.2e-06 57.4 156 39.1
BolC1t02376H Brassica oleracea HOM05D002242 ORTHO05D002275 1.2e-06 57.4 156 39.1
BraA02t06201Z Brassica rapa HOM05D002242 ORTHO05D002275 1.2e-06 57.4 199 38.7
Medtr1g007905 Medicago truncatula HOM05D002242 ORTHO05D002275 1.2e-06 57.4 178 36.0
THA.LOC104825150 Tarenaya hassleriana HOM05D002242 ORTHO05D002275 1.2e-06 57.4 156 37.2
AT4G27810 Arabidopsis thaliana HOM05D002242 ORTHO05D002275 1.6e-06 57.0 173 37.0
BcaC06g32661 Brassica carinata HOM05D002242 ORTHO05D002275 1.6e-06 57.0 91 48.4
BraA01t01867Z Brassica rapa HOM05D002242 ORTHO05D002275 1.6e-06 57.0 156 39.1
Thhalv10027290m.g Eutrema salsugineum HOM05D002242 ORTHO05D002275 1.6e-06 57.0 162 40.1
Medtr3g091680 Medicago truncatula HOM05D002242 ORTHO05D002275 1.6e-06 57.0 97 43.3
Hund27189 Selenicereus undatus HOM05D002242 ORTHO05D002275 1.6e-06 57.0 133 42.1
AL7G24830 Arabidopsis lyrata HOM05D002242 ORTHO05D002275 2.1e-06 56.6 93 50.5
BraA10t43133Z Brassica rapa HOM05D002242 ORTHO05D002275 2.1e-06 56.6 200 33.5
Sabra02G0140300 Salix brachista HOM05D002242 ORTHO05D002275 2.1e-06 56.6 93 43.0
EL10Ac1g00249 Beta vulgaris HOM05D002242 ORTHO05D002275 2.7e-06 56.2 87 49.4
AUR62004507 Chenopodium quinoa HOM05D002242 ORTHO05D002275 2.7e-06 56.2 146 40.4
Sp7g25790 Schrenkiella parvula HOM05D002242 ORTHO05D002275 2.7e-06 56.2 165 38.2
unitig_899.g14793 Utricularia gibba HOM05D002242 ORTHO05D002275 2.7e-06 56.2 116 37.1
vmacro13169 Vaccinium macrocarpon HOM05D002242 ORTHO05D002275 2.7e-06 56.2 74 48.6
Carub.0007s1301 Capsella rubella HOM05D002242 ORTHO05D002275 3.5e-06 55.8 161 41.6
CARHR266040 Cardamine hirsuta HOM05D002242 ORTHO05D002275 3.5e-06 55.8 164 39.0
COL.COLO4_06225 Corchorus olitorius HOM05D002242 ORTHO05D002275 3.5e-06 55.8 105 47.6
Migut.O00897 Erythranthe guttata HOM05D002242 ORTHO05D002275 3.5e-06 55.8 103 42.7
Lsat_1_v5_gn_6_85600 Lactuca sativa HOM05D002242 ORTHO05D002275 3.5e-06 55.8 93 46.2
SalBow4G0604 Salvia bowleyana HOM05D002242 ORTHO05D002275 3.5e-06 55.8 123 42.3
A10p10510 Brassica napus HOM05D002242 ORTHO05D002275 4.6e-06 55.5 200 33.5
FAN01G2189 Fragaria x ananassa HOM05D002242 ORTHO05D002275 4.6e-06 55.5 90 48.9
Peaxi162Scf00716g00032 Petunia axillaris HOM05D000078 ORTHO05D000025 4.6e-06 55.5 93 48.4
Solyc01g096080.3 Solanum lycopersicum HOM05D002242 ORTHO05D002275 4.6e-06 55.5 135 38.5
Sopen01g039800 Solanum pennellii HOM05D002242 ORTHO05D002275 4.6e-06 55.5 135 38.5
Aa31LG7G12160 Aethionema arabicum HOM05D002242 ORTHO05D002275 6.0e-06 55.1 157 38.9
CARHR235540 Cardamine hirsuta HOM05D002242 ORTHO05D002275 6.0e-06 55.1 150 42.0
Ciclev10021650m.g Citrus clementina HOM05D002242 ORTHO05D002275 6.0e-06 55.1 122 41.0
BcaC04g20515 Brassica carinata HOM05D002242 ORTHO05D002275 7.8e-06 54.7 200 33.5
C09p42730 Brassica napus HOM05D002242 ORTHO05D002275 7.8e-06 54.7 200 33.5
BolC9t57149H Brassica oleracea HOM05D002242 ORTHO05D002275 7.8e-06 54.7 200 33.5
Gohir.A07G136800 Gossypium hirsutum HOM05D002242 ORTHO05D002275 7.8e-06 54.7 108 40.7
Gohir.D07G142066 Gossypium hirsutum HOM05D002242 ORTHO05D002275 7.8e-06 54.7 108 40.7
Gorai.001G153800 Gossypium raimondii HOM05D002242 ORTHO05D002275 7.8e-06 54.7 108 40.7
Nitab4.5_0010712g0010 Nicotiana tabacum HOM05D002242 ORTHO05D002275 7.8e-06 54.7 106 44.3


User provided reference genes

Program Settings