Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG01G000060 Citrullus lanatus HOM05D005840 ORTHO05D007144 5.2e-137 491.1 258 100.0
MELO3C005919.2 Cucumis melo HOM05D005840 ORTHO05D007144 1.3e-108 396.7 243 81.5
CsaV3_5G000100 Cucumis sativus L. HOM05D005840 ORTHO05D007144 1.5e-104 383.3 234 82.1
Sed0003210 Sechium edule HOM05D005840 ORTHO05D007144 1.3e-100 370.2 224 79.0
QL09p007163 Quercus lobata HOM05D005840 ORTHO05D007144 3.4e-88 328.9 229 72.5
CiPaw.06G041000 Carya illinoinensis HOM05D005840 ORTHO05D007144 8.4e-87 324.3 214 73.8
Prupe.2G319100 Prunus persica HOM05D005840 ORTHO05D007144 3.2e-86 322.4 233 70.8
Manes.01G043400 Manihot esculenta HOM05D005840 ORTHO05D007144 9.2e-86 320.9 223 72.6
MD07G1299300 Malus domestica HOM05D005840 ORTHO05D007144 1.2e-85 320.5 224 69.6
CSS0020402 Camellia sinensis var. sinensis HOM05D005840 ORTHO05D007144 2.1e-85 319.7 223 70.4
Nn3g18788 Nelumbo nucifera HOM05D005840 ORTHO05D007144 3.5e-85 318.9 263 62.7
Sed0025728 Sechium edule HOM05D005840 ORTHO05D007144 6.6e-84 314.7 212 72.6
CANSAT21G1965 Cannabis sativa HOM05D005840 ORTHO05D007144 1.9e-83 313.2 232 68.1
TPR.G33360 Trifolium pratense HOM05D005840 ORTHO05D007144 1.9e-83 313.2 236 64.4
Cpa.g.sc3.150 Carica papaya HOM05D005840 ORTHO05D007144 2.5e-83 312.8 236 66.5
TAR375G0732 Trochodendron aralioides HOM05D005840 ORTHO05D007144 3.3e-83 312.4 233 68.2
Psat5g071840 Pisum sativum HOM05D005840 ORTHO05D007144 7.3e-83 311.2 235 64.7
Ca_16781_v3 Cicer arietinum L. HOM05D005840 ORTHO05D007144 9.6e-83 310.8 231 64.5
MD01G1228500 Malus domestica HOM05D005840 ORTHO05D007144 9.6e-83 310.8 219 69.9
Cc02_g00800 Coffea canephora HOM05D005840 ORTHO05D007144 1.6e-82 310.1 226 69.9
RcHm_v2.0_Chr1g0382901 Rosa chinensis HOM05D005840 ORTHO05D007144 2.1e-82 309.7 232 65.5
Medtr3g092810 Medicago truncatula HOM05D005840 ORTHO05D007144 3.6e-82 308.9 238 62.6
Haze_00300 Corylus avellana HOM05D005840 ORTHO05D007144 8.1e-82 307.8 209 71.8
TWI14G0550 Tripterygium wilfordii HOM05D005840 ORTHO05D007144 1.4e-81 307.0 234 65.0
Dinv35383 Davidia involucrata HOM05D005840 ORTHO05D007144 2.4e-81 306.2 228 66.2
FvH4_7g32940 Fragaria vesca HOM05D005840 ORTHO05D007144 4.0e-81 305.4 252 61.1
Thecc.03G209000 Theobroma cacao HOM05D005840 ORTHO05D007144 4.0e-81 305.4 223 67.3
Potri.015G002500 Populus trichocarpa HOM05D005840 ORTHO05D007144 1.2e-80 303.9 230 67.4
Sabra15G0001600 Salix brachista HOM05D005840 ORTHO05D007144 2.0e-80 303.1 230 67.0
Lalb_Chr23g0271941 Lupinus albus HOM05D005840 ORTHO05D007144 3.4e-80 302.4 238 65.1
Glyma.06G136800 Glycine max HOM05D005840 ORTHO05D007144 4.4e-80 302.0 246 61.4
Duzib084G0063 Durio zibethinus HOM05D005840 ORTHO05D007144 1.7e-79 300.1 217 67.7
VMungo1309G2416 Vigna mungo HOM05D005840 ORTHO05D007144 1.7e-79 300.1 243 61.7
DCAR_008987 Daucus carota HOM05D005840 ORTHO05D007144 8.4e-79 297.7 224 64.7
Sc19g0000580 Simmondsia chinensis HOM05D005840 ORTHO05D007144 8.4e-79 297.7 262 58.0
Glyma.04G228100 Glycine max HOM05D005840 ORTHO05D007144 1.1e-78 297.4 247 60.7
Lsat_1_v5_gn_9_49980 Lactuca sativa HOM05D005840 ORTHO05D007144 1.1e-78 297.4 262 57.6
Actinidia34271 Actinidia chinensis HOM05D005840 ORTHO05D007144 1.9e-78 296.6 200 71.5
Lj1g0001826 Lotus japonicus HOM05D005840 ORTHO05D007144 4.2e-78 295.4 251 59.0
Phvul.009G044800 Phaseolus vulgaris HOM05D005840 ORTHO05D007144 4.2e-78 295.4 243 61.3
PGR042G3207 Punica granatum HOM05D005840 ORTHO05D007144 4.2e-78 295.4 241 63.5
FAN10G0422 Fragaria x ananassa HOM05D005840 ORTHO05D007144 7.1e-78 294.7 224 65.6
Hma1.2p1_0094F.1_g047400 Hydrangea macrophylla HOM05D005840 ORTHO05D007144 7.1e-78 294.7 215 67.9
FAN10G3655 Fragaria x ananassa HOM05D005840 ORTHO05D007144 1.6e-77 293.5 224 65.2
Lalb_Chr08g0239571 Lupinus albus HOM05D005840 ORTHO05D007144 1.6e-77 293.5 244 60.7
MBI12_g45814_MAGBIO Magnolia biondii HOM05D005840 ORTHO05D007144 1.6e-77 293.5 225 64.0
Gohir.D11G016500 Gossypium hirsutum HOM05D005840 ORTHO05D007144 2.1e-77 293.1 223 65.0
Gorai.007G017300 Gossypium raimondii HOM05D005840 ORTHO05D007144 2.1e-77 293.1 223 65.9
PGSC0003DMG400000562 Solanum tuberosum HOM05D005840 ORTHO05D007144 2.1e-77 293.1 234 62.8
Oeu023690.1 Olea europaea HOM05D005840 ORTHO05D007144 4.6e-77 292.0 240 62.1
FAN03G2485 Fragaria x ananassa HOM05D005840 ORTHO05D007144 1.0e-76 290.8 228 64.9
Gohir.A11G016700 Gossypium hirsutum HOM05D005840 ORTHO05D007144 1.0e-76 290.8 218 67.0
Solyc03g081220.1 Solanum lycopersicum HOM05D005840 ORTHO05D007144 1.0e-76 290.8 231 62.3
PSO063G5360 Papaver somniferum HOM05D005840 ORTHO05D007144 1.3e-76 290.4 231 64.5
AL6G36040 Arabidopsis lyrata HOM05D005840 ORTHO05D007144 3.9e-76 288.9 237 58.6
Ciclev10021557m.g Citrus clementina HOM05D005840 ORTHO05D007144 3.9e-76 288.9 219 67.1
Lj3P895T18 Lonicera japonica HOM05D005840 ORTHO05D007144 3.9e-76 288.9 211 67.3
Sopen03g021950 Solanum pennellii HOM05D005840 ORTHO05D007144 3.9e-76 288.9 234 61.5
PSO782G2283 Papaver somniferum HOM05D005840 ORTHO05D007144 5.1e-76 288.5 208 68.8
CARHR188950 Cardamine hirsuta HOM05D005840 ORTHO05D007144 6.6e-76 288.1 237 59.1
Oeu055391.1 Olea europaea HOM05D005840 ORTHO05D007144 8.7e-76 287.7 219 63.9
Aa31LG11G3710 Aethionema arabicum HOM05D005840 ORTHO05D007144 1.1e-75 287.3 238 59.7
AUR62005991 Chenopodium quinoa HOM05D005840 ORTHO05D007144 1.1e-75 287.3 235 61.3
COL.COLO4_14373 Corchorus olitorius HOM05D005840 ORTHO05D007144 1.5e-75 287.0 208 65.9
Sp2g22870 Schrenkiella parvula HOM05D005840 ORTHO05D007144 1.5e-75 287.0 237 59.5
Carub.0006s2229 Capsella rubella HOM05D005840 ORTHO05D007144 1.9e-75 286.6 237 60.3
Thhalv10005309m.g Eutrema salsugineum HOM05D005840 ORTHO05D007144 1.9e-75 286.6 236 58.9
Nitab4.5_0000319g0020 Nicotiana tabacum HOM05D005840 ORTHO05D007144 2.5e-75 286.2 228 62.7
Nitab4.5_0010809g0010 Nicotiana tabacum HOM05D005840 ORTHO05D007144 3.3e-75 285.8 228 62.3
AUR62028079 Chenopodium quinoa HOM05D005840 ORTHO05D007144 7.3e-75 284.6 235 60.9
HanXRQChr10g0305331 Helianthus annuus HOM05D005840 ORTHO05D007144 7.3e-75 284.6 231 63.2
Ah.13g070770 Amaranthus hybridus HOM05D005840 ORTHO05D007144 9.6e-75 284.3 238 61.8
CAN.G303.23 Capsicum annuum HOM05D005840 ORTHO05D007144 9.6e-75 284.3 229 62.0
THA.LOC104798983 Tarenaya hassleriana HOM05D005840 ORTHO05D007144 1.6e-74 283.5 241 61.8
Lsat_1_v5_gn_2_135020 Lactuca sativa HOM05D005840 ORTHO05D007144 2.1e-74 283.1 220 62.3
Atru.chr12.2435 Acer truncatum HOM05D005840 ORTHO05D007144 2.8e-74 282.7 236 61.4
BolC9t53635H Brassica oleracea HOM05D005840 ORTHO05D007144 4.8e-74 282.0 210 64.3
FAN01G0139 Fragaria x ananassa HOM05D005840 ORTHO05D007144 1.1e-73 280.8 230 63.0
Peaxi162Scf00912g10012 Petunia axillaris HOM05D005840 ORTHO05D007144 1.1e-73 280.8 216 63.0
AT5G24460 Arabidopsis thaliana HOM05D005840 ORTHO05D007144 4.0e-73 278.9 239 58.2
Rhsim03G0215700 Rhododendron simsii HOM05D005840 ORTHO05D007144 4.0e-73 278.9 210 64.8
BcaNung01236 Brassica carinata HOM05D005840 ORTHO05D007144 9.0e-73 277.7 210 62.4
BcaC04g23543 Brassica carinata HOM05D005840 ORTHO05D007144 1.2e-72 277.3 209 62.2
A09p06480 Brassica napus HOM05D005840 ORTHO05D007144 1.2e-72 277.3 209 62.2
C09p07230 Brassica napus HOM05D005840 ORTHO05D007144 1.2e-72 277.3 209 62.2
BraA09t36291Z Brassica rapa HOM05D005840 ORTHO05D007144 1.2e-72 277.3 209 62.2
Gorai.004G125300 Gossypium raimondii HOM05D005840 ORTHO05D007144 1.2e-72 277.3 230 61.7
Gohir.A08G104700 Gossypium hirsutum HOM05D005840 ORTHO05D007144 2.6e-72 276.2 230 61.3
BcaB04g19821 Brassica carinata HOM05D005840 ORTHO05D007144 5.8e-72 275.0 206 62.6
C07p43220 Brassica napus HOM05D005840 ORTHO05D007144 5.8e-72 275.0 206 62.6
ECA232G4892 Erigeron canadensis HOM05D005840 ORTHO05D007144 5.8e-72 275.0 209 63.6
MSTRG.26975 Avicennia marina HOM05D005840 ORTHO05D007144 9.9e-72 274.2 240 58.3
EL10Ac3g05171 Beta vulgaris HOM05D005840 ORTHO05D007144 9.9e-72 274.2 214 62.1
Migut.F00150 Erythranthe guttata HOM05D005840 ORTHO05D007144 2.2e-71 273.1 246 56.5
CDE04G1956 Ceratophyllum demersum HOM05D005840 ORTHO05D007144 6.4e-71 271.6 226 62.4
A06p35290 Brassica napus HOM05D005840 ORTHO05D007144 8.4e-71 271.2 234 57.3
vmacro22785 Vaccinium macrocarpon HOM05D005840 ORTHO05D007144 8.4e-71 271.2 285 51.2
CDE12G0905 Ceratophyllum demersum HOM05D005840 ORTHO05D007144 5.4e-70 268.5 204 67.2
SGA_v2.0_scaffold18G08468 Striga asiatica HOM05D005840 ORTHO05D007144 4.6e-69 265.4 209 62.7
SalBow6G2506 Salvia bowleyana HOM05D005840 ORTHO05D007144 1.0e-68 264.2 239 58.6
MSTRG.8611 Avicennia marina HOM05D005840 ORTHO05D007144 2.3e-68 263.1 215 60.9
BraA06t26455Z Brassica rapa HOM05D005840 ORTHO05D007144 3.0e-68 262.7 248 55.2
unitig_37.g11995 Utricularia gibba HOM05D005840 ORTHO05D007144 8.7e-68 261.2 239 54.8
Aqoxy6G02459 Aquilegia oxysepala HOM05D005840 ORTHO05D007144 1.9e-67 260.0 225 60.4
Aqoxy6G02489 Aquilegia oxysepala HOM05D005840 ORTHO05D007144 1.9e-67 260.0 225 60.4
Actinidia08699 Actinidia chinensis HOM05D005840 ORTHO05D007144 4.3e-67 258.8 209 62.2
vmacro06444 Vaccinium macrocarpon HOM05D005840 ORTHO05D007144 1.3e-66 257.3 264 51.9
Cc11_g13290 Coffea canephora HOM05D005840 ORTHO05D007144 5.6e-59 231.9 167 71.3
unitig_92.g28240 Utricularia gibba HOM05D005840 ORTHO05D007144 6.2e-58 228.4 200 57.5
unitig_0.g2444 Utricularia gibba HOM05D005840 ORTHO05D007144 1.4e-57 227.3 200 56.5
SHI02291 Sapria himalayana HOM05D005840 ORTHO05D007144 9.3e-54 214.5 213 53.1
SEGI_38224 Sequoiadendron giganteum HOM05D005840 ORTHO05D007144 1.6e-53 213.8 212 49.1
HPP92_022381 Vanilla planifolia HOM05D005840 ORTHO05D007144 1.3e-52 210.7 212 52.4
ATR0661G235 Amborella trichopoda HOM05D005840 ORTHO05D007144 2.8e-50 203.0 210 51.4
BcaB04g19819 Brassica carinata HOM05D005840 ORTHO05D007144 1.2e-48 197.6 164 57.3
COL.COLO4_35601 Corchorus olitorius HOM05D005840 ORTHO05D007144 9.7e-43 177.9 206 45.6
Mapoly0031s0111 Marchantia polymorpha HOM05D005840 ORTHO05D007144 1.6e-42 177.2 218 45.0
Os06g0712200 Oryza sativa ssp. japonica HOM05D005840 ORTHO05D007144 1.0e-39 167.9 228 44.7
Pp3c3_29470 Physcomitrium patens HOM05D005840 ORTHO05D007144 1.7e-39 167.2 241 40.2
SMO140G0013 Selaginella moellendorffii HOM05D005840 ORTHO05D007144 1.4e-38 164.1 233 40.8
Zm00001eb272540 Zea mays HOM05D005840 ORTHO05D007144 2.7e-37 159.8 219 44.7
COL.COLO4_12096 Corchorus olitorius HOM05D005840 ORTHO05D007144 7.9e-37 158.3 174 47.7
CBR_g20004 Chara braunii HOM05D005840 ORTHO05D007144 1.0e-36 157.9 170 50.0
BcaNung02020 Brassica carinata HOM05D005840 ORTHO05D007144 6.7e-36 155.2 126 57.1
BcaB04g19822 Brassica carinata HOM05D005840 ORTHO05D007144 5.5e-30 135.6 118 58.5
Gohir.D08G116401 Gossypium hirsutum HOM05D005840 ORTHO05D007144 1.2e-29 134.4 111 61.3
Duzib114G0266 Durio zibethinus HOM05D005840 ORTHO05D007144 1.1e-22 111.3 132 43.2
SalBow4G0698 Salvia bowleyana HOM05D001856 ORTHO05D007144 9.7e-19 98.2 77 61.0
Cre01.g012300 Chlamydomonas reinhardtii HOM05D005840 ORTHO05D007144 6.3e-18 95.5 145 40.7
MCO06G087 Micromonas commoda HOM05D005840 ORTHO05D007144 2.4e-17 93.6 211 34.6
SalBow6G2140 Salvia bowleyana HOM05D005840 ORTHO05D007144 9.1e-17 91.7 50 78.0
CAN.G2.4 Capsicum annuum HOM05D005840 ORTHO05D007144 1.0e-15 88.2 78 52.6
COL.COLO4_35602 Corchorus olitorius HOM05D005840 ORTHO05D007144 1.2e-13 81.3 103 41.7
Potri.010G149800 Populus trichocarpa HOM05D005840 ORTHO05D007144 6.8e-12 75.5 75 46.7


User provided reference genes

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