Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG00G006380 Citrullus lanatus HOM05D004910 ORTHO05D006864 5.5e-37 157.1 80 100.0
MELO3C006215.2 Cucumis melo HOM05D004910 ORTHO05D006864 2.9e-22 108.2 53 100.0
CsaV3_3G009930 Cucumis sativus L. HOM05D004910 ORTHO05D006864 1.2e-20 102.8 53 96.2
Ciclev10030475m.g Citrus clementina HOM05D004910 ORTHO05D006864 1.0e-19 99.8 53 92.5
Thecc.05G234000 Theobroma cacao HOM05D004910 ORTHO05D006864 1.0e-19 99.8 53 90.6
COL.COLO4_08664 Corchorus olitorius HOM05D004910 ORTHO05D006864 3.9e-19 97.8 53 88.7
Gorai.007G249800 Gossypium raimondii HOM05D004910 ORTHO05D006864 3.9e-19 97.8 53 88.7
MD07G1080500 Malus domestica HOM05D004910 ORTHO05D006864 6.7e-19 97.1 53 86.8
Medtr8g009780 Medicago truncatula HOM05D004910 ORTHO05D006864 6.7e-19 97.1 53 86.8
Ca_25886_v3 Cicer arietinum L. HOM05D004910 ORTHO05D006864 8.8e-19 96.7 53 86.8
Sed0008127 Sechium edule HOM05D004910 ORTHO05D006864 8.8e-19 96.7 53 88.7
Actinidia31737 Actinidia chinensis HOM05D004910 ORTHO05D006864 1.1e-18 96.3 53 83.0
Duzib177G0285 Durio zibethinus HOM05D004910 ORTHO05D006864 1.5e-18 95.9 53 86.8
TPR.G17367 Trifolium pratense HOM05D004910 ORTHO05D006864 1.5e-18 95.9 53 84.9
TWI34G0933 Tripterygium wilfordii HOM05D004910 ORTHO05D006864 1.5e-18 95.9 53 84.9
Eucgr.D01069 Eucalyptus grandis HOM05D004910 ORTHO05D006864 2.0e-18 95.5 53 84.9
Lsat_1_v5_gn_4_42261 Lactuca sativa HOM05D004910 ORTHO05D006864 2.0e-18 95.5 52 86.5
Psat4g215960 Pisum sativum HOM05D004910 ORTHO05D006864 2.0e-18 95.5 53 84.9
CSS0032650 Camellia sinensis var. sinensis HOM05D004910 ORTHO05D006864 2.6e-18 95.1 53 84.9
TAR629G2465 Trochodendron aralioides HOM05D004910 ORTHO05D006864 2.6e-18 95.1 53 83.0
DCAR_029567 Daucus carota HOM05D004910 ORTHO05D006864 4.4e-18 94.4 53 84.9
SalBow4G1969 Salvia bowleyana HOM05D004910 ORTHO05D006864 4.4e-18 94.4 53 83.0
FvH4_7g07740 Fragaria vesca HOM05D004910 ORTHO05D006864 5.7e-18 94.0 53 83.0
FAN06G0636 Fragaria x ananassa HOM05D004910 ORTHO05D006864 5.7e-18 94.0 53 83.0
Nitab4.5_0000792g0070 Nicotiana tabacum HOM05D004910 ORTHO05D006864 5.7e-18 94.0 53 83.0
Nitab4.5_0006461g0010 Nicotiana tabacum HOM05D004910 ORTHO05D006864 5.7e-18 94.0 53 83.0
ATR0829G021 Amborella trichopoda HOM05D004910 ORTHO05D006864 7.4e-18 93.6 53 83.0
arahy.Tifrunner.gnm1.ann1.2JI1W5 Arachis hypogaea HOM05D004910 ORTHO05D006864 7.4e-18 93.6 53 84.9
arahy.Tifrunner.gnm1.ann1.7UUD9R Arachis hypogaea HOM05D004910 ORTHO05D006864 7.4e-18 93.6 53 84.9
FAN01G0980 Fragaria x ananassa HOM05D004910 ORTHO05D006864 7.4e-18 93.6 53 83.0
Manes.08G157000 Manihot esculenta HOM05D004910 ORTHO05D006864 7.4e-18 93.6 53 84.9
Sopen01g032990 Solanum pennellii HOM05D004910 ORTHO05D006864 7.4e-18 93.6 53 83.0
Atru.chr2.1651 Acer truncatum HOM05D004910 ORTHO05D006864 9.7e-18 93.2 53 81.1
Cc08_g05600 Coffea canephora HOM05D004910 ORTHO05D006864 9.7e-18 93.2 53 81.1
Dinv43524 Davidia involucrata HOM05D004910 ORTHO05D006864 1.3e-17 92.8 53 81.1
Nitab4.5_0011076g0010 Nicotiana tabacum HOM05D004910 ORTHO05D006864 1.3e-17 92.8 53 83.0
CiPaw.02G046700 Carya illinoinensis HOM05D004910 ORTHO05D006864 1.7e-17 92.4 53 83.0
Cpa.g.sc73.62 Carica papaya HOM05D004910 ORTHO05D006864 2.2e-17 92.0 53 83.0
FAN03G0816 Fragaria x ananassa HOM05D004910 ORTHO05D006864 2.2e-17 92.0 53 81.1
Glyma.03G099800 Glycine max HOM05D004910 ORTHO05D006864 2.2e-17 92.0 53 83.0
Glyma.07G122900 Glycine max HOM05D004910 ORTHO05D006864 2.2e-17 92.0 53 83.0
Potri.013G071800 Populus trichocarpa HOM05D004910 ORTHO05D006864 2.2e-17 92.0 53 83.0
QL04p053202 Quercus lobata HOM05D004910 ORTHO05D006864 2.2e-17 92.0 53 86.8
RcHm_v2.0_Chr1g0342311 Rosa chinensis HOM05D004910 ORTHO05D006864 2.2e-17 92.0 53 81.1
Phvul.010G039700 Phaseolus vulgaris HOM05D004910 ORTHO05D006864 2.8e-17 91.7 53 83.0
VMungo0331G1288 Vigna mungo HOM05D004910 ORTHO05D010195 2.8e-17 91.7 53 83.0
GSVIVG01019298001 Vitis vinifera HOM05D004910 ORTHO05D006864 2.8e-17 91.7 53 83.0
Prupe.2G100700 Prunus persica HOM05D004910 ORTHO05D006864 3.7e-17 91.3 53 81.1
Prupe.2G105000 Prunus persica HOM05D004910 ORTHO05D006864 3.7e-17 91.3 53 81.1
FAN10G3403 Fragaria x ananassa HOM05D004910 ORTHO05D006864 4.8e-17 90.9 53 79.2
Lj3g0022995 Lotus japonicus HOM05D004910 ORTHO05D006864 6.3e-17 90.5 53 81.1
Solyc01g081420.3 Solanum lycopersicum HOM05D004910 ORTHO05D006864 6.3e-17 90.5 53 81.1
THA.LOC104805731 Tarenaya hassleriana HOM05D004910 ORTHO05D006864 8.2e-17 90.1 53 79.2
Aa31LG9G17970 Aethionema arabicum HOM05D004910 ORTHO05D006864 1.1e-16 89.7 56 76.8
unitig_578.g16705 Utricularia gibba HOM05D004910 ORTHO05D006864 1.1e-16 89.7 53 79.2
Migut.N01670 Erythranthe guttata HOM05D004910 ORTHO05D006864 1.4e-16 89.4 53 81.1
HanXRQChr15g0492621 Helianthus annuus HOM05D004910 ORTHO05D006864 2.4e-16 88.6 52 80.8
CAN.G992.20 Capsicum annuum HOM05D004910 ORTHO05D006864 3.1e-16 88.2 53 77.4
PSO063G2935 Papaver somniferum HOM05D004910 ORTHO05D006864 3.1e-16 88.2 51 78.4
PSO782G5450 Papaver somniferum HOM05D004910 ORTHO05D006864 3.1e-16 88.2 51 78.4
Haze_15794 Corylus avellana HOM05D004910 ORTHO05D006864 5.3e-16 87.4 53 81.1
Dinv00622 Davidia involucrata HOM05D004910 ORTHO05D006864 5.3e-16 87.4 79 55.7
Peaxi162Scf00907g00123 Petunia axillaris HOM05D004910 ORTHO05D006864 5.3e-16 87.4 53 79.2
vmacro13594 Vaccinium macrocarpon HOM05D004910 ORTHO05D006864 5.3e-16 87.4 49 81.6
Lalb_Chr07g0194851 Lupinus albus HOM05D004910 ORTHO05D006864 7.0e-16 87.0 53 79.2
AL7G44770 Arabidopsis lyrata HOM05D004910 ORTHO05D006864 9.1e-16 86.7 53 79.2
CANSAT25G1237 Cannabis sativa HOM05D004910 ORTHO05D006864 9.1e-16 86.7 53 79.2
PGR083G1400 Punica granatum HOM05D004910 ORTHO05D006864 1.6e-15 85.9 54 77.8
Mapoly0032s0018 Marchantia polymorpha HOM05D004910 ORTHO05D006864 4.5e-15 84.3 53 75.5
MBI04_g30775_MAGBIO Magnolia biondii HOM05D004910 ORTHO05D006864 5.9e-15 84.0 47 83.0
CDE12G0362 Ceratophyllum demersum HOM05D004910 ORTHO05D006864 2.9e-14 81.6 53 69.8
Cfa003693 Carpinus fangiana HOM05D004910 ORTHO05D006864 1.1e-13 79.7 47 80.9
Aqoxy3G02002 Aquilegia oxysepala HOM05D004910 ORTHO05D006864 1.9e-13 79.0 56 69.6
AUR62014510 Chenopodium quinoa HOM05D004910 ORTHO05D006864 7.2e-13 77.0 54 70.4
AUR62038025 Chenopodium quinoa HOM05D004910 ORTHO05D006864 7.2e-13 77.0 54 70.4
Pp3c7_26820 Physcomitrium patens HOM05D004910 ORTHO05D006864 1.6e-12 75.9 52 67.3
AagrBONN_evm.TU.Sc2ySwM_362.1947 Anthoceros agrestis HOM05D004910 ORTHO05D006864 8.0e-12 73.6 53 67.9
Zm00001eb025470 Zea mays HOM05D004910 ORTHO05D006864 8.0e-12 73.6 45 75.6
EL10Ac1g00665 Beta vulgaris HOM05D004910 ORTHO05D006864 1.4e-11 72.8 54 66.7
Phvul.010G039400 Phaseolus vulgaris HOM05D004910 ORTHO05D006864 2.0e-10 68.9 84 50.0
ECA234G3354 Erigeron canadensis HOM05D004910 ORTHO05D006864 3.7e-09 64.7 35 85.7
Rhsim07G0047300 Rhododendron simsii HOM05D004910 ORTHO05D006864 6.3e-09 63.9 35 82.9
CBR_g49462 Chara braunii HOM05D004910 ORTHO05D006864 2.2e-06 55.5 46 52.2


User provided reference genes

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