Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG00G006150 Citrullus lanatus HOM05D000389 ORTHO05D149757 3.9e-78 294.7 143 100.0
ClCG10G003600 Citrullus lanatus HOM05D000389 ORTHO05D000287 1.2e-26 123.6 77 79.2
MELO3C014031.2 Cucumis melo HOM05D000389 ORTHO05D000287 7.8e-26 120.9 60 93.3
CsaV3_3G003600 Cucumis sativus L. HOM05D000389 ORTHO05D000287 7.8e-26 120.9 60 93.3
Sed0013362 Sechium edule HOM05D000389 ORTHO05D000287 5.0e-25 118.2 60 85.0
Prupe.6G037100 Prunus persica HOM05D000389 ORTHO05D000287 6.0e-10 68.2 56 55.4
FAN25G1818 Fragaria x ananassa HOM05D000389 ORTHO05D000287 5.1e-09 65.1 60 55.0
MD09G1179500 Malus domestica HOM05D000389 ORTHO05D000287 5.1e-09 65.1 60 55.0
MD11G1048100 Malus domestica HOM05D000389 ORTHO05D000287 5.1e-09 65.1 60 55.0
FvH4_3g41300 Fragaria vesca HOM05D000389 ORTHO05D000287 6.6e-09 64.7 60 55.0
FAN11G3845 Fragaria x ananassa HOM05D000389 ORTHO05D000287 6.6e-09 64.7 60 55.0
FAN16G2495 Fragaria x ananassa HOM05D000389 ORTHO05D000287 6.6e-09 64.7 60 55.0
FAN21G2242 Fragaria x ananassa HOM05D000389 ORTHO05D000287 6.6e-09 64.7 60 55.0
MD03G1045800 Malus domestica HOM05D000389 ORTHO05D000287 1.1e-08 63.9 43 60.5
RcHm_v2.0_Chr5g0074101 Rosa chinensis HOM05D000389 ORTHO05D000287 1.5e-08 63.5 59 50.8
CSS0010757 Camellia sinensis var. sinensis HOM05D000389 ORTHO05D000287 2.5e-08 62.8 47 63.8
Manes.01G007900 Manihot esculenta HOM05D000389 ORTHO05D000287 9.5e-08 60.8 60 51.7
CiPaw.16G062600 Carya illinoinensis HOM05D000389 ORTHO05D000287 1.2e-07 60.5 60 53.3
MSTRG.7049 Avicennia marina HOM05D000389 ORTHO05D000287 2.1e-07 59.7 44 65.9
HanXRQChr11g0335211 Helianthus annuus HOM05D000389 ORTHO05D000287 3.6e-07 58.9 48 62.5
SEGI_31427 Sequoiadendron giganteum HOM05D000389 ORTHO05D000287 3.6e-07 58.9 35 68.6
PGSC0003DMG400011273 Solanum tuberosum HOM05D000389 ORTHO05D000287 3.6e-07 58.9 47 55.3
Oeu002816.1 Olea europaea HOM05D000389 ORTHO05D000287 4.7e-07 58.5 47 63.8
SEGI_36773 Sequoiadendron giganteum HOM05D000389 ORTHO05D000287 4.7e-07 58.5 38 65.8
Solyc10g008490.3 Solanum lycopersicum HOM05D000389 ORTHO05D000287 4.7e-07 58.5 54 53.7
Sopen10g004310 Solanum pennellii HOM05D000389 ORTHO05D000287 4.7e-07 58.5 54 53.7
PGSC0003DMG400021678 Solanum tuberosum HOM05D000389 ORTHO05D000287 4.7e-07 58.5 54 53.7
A07p44640 Brassica napus HOM05D000389 ORTHO05D000287 6.2e-07 58.2 35 80.0
C06p53480 Brassica napus HOM05D000389 ORTHO05D000287 6.2e-07 58.2 35 80.0
BolC6t40363H Brassica oleracea HOM05D000389 ORTHO05D000287 6.2e-07 58.2 35 80.0
BraA07t31973Z Brassica rapa HOM05D000389 ORTHO05D000287 6.2e-07 58.2 35 80.0
Nn1g08403 Nelumbo nucifera HOM05D000389 ORTHO05D000287 6.2e-07 58.2 48 58.3
PGR083G1776 Punica granatum HOM05D000389 ORTHO05D000287 6.2e-07 58.2 39 64.1
AL2G40320 Arabidopsis lyrata HOM05D000389 ORTHO05D000287 8.1e-07 57.8 36 75.0
BcaC08g47522 Brassica carinata HOM05D000389 ORTHO05D000287 8.1e-07 57.8 35 77.1
Ca_01514_v3 Cicer arietinum L. HOM05D000389 ORTHO05D000287 8.1e-07 57.8 53 52.8
Ah.06g195430 Amaranthus hybridus HOM05D004789 ORTHO05D006078 1.1e-06 57.4 54 51.9
MSTRG.16123 Avicennia marina HOM05D000389 ORTHO05D000287 1.1e-06 57.4 44 63.6
CAN.G943.22 Capsicum annuum HOM05D000389 ORTHO05D000287 1.1e-06 57.4 45 60.0
SalBow8G3960 Salvia bowleyana HOM05D000389 ORTHO05D000287 1.1e-06 57.4 35 77.1
TWI36G0761 Tripterygium wilfordii HOM05D000389 ORTHO05D000287 1.1e-06 57.4 56 48.2
AT1G79630 Arabidopsis thaliana HOM05D000389 ORTHO05D000287 1.4e-06 57.0 35 77.1
MSTRG.13055 Avicennia marina HOM05D000389 ORTHO05D000287 1.4e-06 57.0 36 75.0
HanXRQChr17g0553371 Helianthus annuus HOM05D000389 ORTHO05D000287 1.4e-06 57.0 59 49.2
Aa31LG4G1340 Aethionema arabicum HOM05D000389 ORTHO05D000287 1.8e-06 56.6 35 74.3
arahy.Tifrunner.gnm1.ann1.P2QV17 Arachis hypogaea HOM05D000389 ORTHO05D000287 1.8e-06 56.6 62 45.2
Duzib052G0079 Durio zibethinus HOM05D000389 ORTHO05D000287 1.8e-06 56.6 62 45.2
MBI14_g11790_MAGBIO Magnolia biondii HOM05D000389 ORTHO05D000287 1.8e-06 56.6 54 53.7
Actinidia39306 Actinidia chinensis HOM05D000389 ORTHO05D000287 2.4e-06 56.2 54 51.9
Migut.M01569 Erythranthe guttata HOM05D002153 ORTHO05D002137 2.4e-06 56.2 42 66.7
Peaxi162Scf00232g01012 Petunia axillaris HOM05D000389 ORTHO05D000287 2.4e-06 56.2 49 57.1
THA.LOC104812407 Tarenaya hassleriana HOM05D000389 ORTHO05D000287 2.4e-06 56.2 50 58.0
vmacro11649 Vaccinium macrocarpon HOM05D000389 ORTHO05D000287 2.4e-06 56.2 35 68.6
BcaB04g19391 Brassica carinata HOM05D000389 ORTHO05D000287 3.1e-06 55.8 60 51.7
Gohir.A02G084700 Gossypium hirsutum HOM05D000389 ORTHO05D000287 3.1e-06 55.8 56 51.8
Gohir.D02G112000 Gossypium hirsutum HOM05D000389 ORTHO05D000287 3.1e-06 55.8 56 51.8
Gorai.005G126900 Gossypium raimondii HOM05D000389 ORTHO05D000287 3.1e-06 55.8 56 51.8
SEGI_07741 Sequoiadendron giganteum HOM05D000389 ORTHO05D000287 3.1e-06 55.8 56 44.6
Solyc10g005640.4 Solanum lycopersicum HOM05D000389 ORTHO05D000287 3.1e-06 55.8 35 62.9
Sopen10g001610 Solanum pennellii HOM05D000389 ORTHO05D000287 3.1e-06 55.8 35 62.9
AL1G28340 Arabidopsis lyrata HOM05D000389 ORTHO05D000287 4.0e-06 55.5 35 74.3
AT1G16220 Arabidopsis thaliana HOM05D000389 ORTHO05D000287 4.0e-06 55.5 35 74.3
AT3G02750 Arabidopsis thaliana HOM05D000389 ORTHO05D000287 4.0e-06 55.5 35 68.6
arahy.Tifrunner.gnm1.ann1.SHNW9G Arachis hypogaea HOM05D000389 ORTHO05D000287 4.0e-06 55.5 60 55.0
Carub.0002s2651 Capsella rubella HOM05D000389 ORTHO05D000287 4.0e-06 55.5 35 71.4
CARHR016690 Cardamine hirsuta HOM05D000389 ORTHO05D000287 4.0e-06 55.5 35 74.3
PSO063G3932 Papaver somniferum HOM05D000389 ORTHO05D000287 4.0e-06 55.5 47 53.2
PSO782G2973 Papaver somniferum HOM05D000389 ORTHO05D000287 4.0e-06 55.5 47 53.2
Hund07353 Selenicereus undatus HOM05D000389 ORTHO05D000287 4.0e-06 55.5 60 53.3
Hund08018 Selenicereus undatus HOM05D000389 ORTHO05D000287 4.0e-06 55.5 54 51.9
TAR626G0252 Trochodendron aralioides HOM05D000389 ORTHO05D000287 4.0e-06 55.5 55 47.3
HPP92_015735 Vanilla planifolia HOM05D000389 ORTHO05D011980 4.0e-06 55.5 34 73.5
GSVIVG01030553001 Vitis vinifera HOM05D000389 ORTHO05D000287 4.0e-06 55.5 65 41.5
AL3G12160 Arabidopsis lyrata HOM05D000389 ORTHO05D000287 5.2e-06 55.1 35 68.6
arahy.Tifrunner.gnm1.ann1.11NDUV Arachis hypogaea HOM05D000389 ORTHO05D000287 5.2e-06 55.1 60 53.3
EL10Ac4g09993 Beta vulgaris HOM05D000389 ORTHO05D000287 5.2e-06 55.1 58 50.0
Carub.0001s1597 Capsella rubella HOM05D000389 ORTHO05D000287 5.2e-06 55.1 35 74.3
Carub.0003s0185 Capsella rubella HOM05D000389 ORTHO05D000287 5.2e-06 55.1 35 68.6
CAN.G492.65 Capsicum annuum HOM05D000389 ORTHO05D000287 5.2e-06 55.1 47 59.6
AUR62037352 Chenopodium quinoa HOM05D000389 ORTHO05D000287 5.2e-06 55.1 66 40.9
AUR62042678 Chenopodium quinoa HOM05D000389 ORTHO05D000287 5.2e-06 55.1 66 40.9
Dinv15368 Davidia involucrata HOM05D000389 ORTHO05D000287 5.2e-06 55.1 60 50.0
Eucgr.F01977 Eucalyptus grandis HOM05D000389 ORTHO05D000287 5.2e-06 55.1 37 62.2
Lsat_1_v5_gn_7_116041 Lactuca sativa HOM05D000389 ORTHO05D000287 5.2e-06 55.1 35 77.1
Lsat_1_v5_gn_9_88341 Lactuca sativa HOM05D000389 ORTHO05D000287 5.2e-06 55.1 50 60.0
Peaxi162Scf01258g00120 Petunia axillaris HOM05D000389 ORTHO05D000287 5.2e-06 55.1 38 63.2
PGSC0003DMG400023473 Solanum tuberosum HOM05D000389 ORTHO05D000287 5.2e-06 55.1 58 55.2
Thecc.02G175600 Theobroma cacao HOM05D000389 ORTHO05D000287 5.2e-06 55.1 65 44.6
vmacro12273 Vaccinium macrocarpon HOM05D000389 ORTHO05D000287 5.2e-06 55.1 55 52.7
Zm00001eb034100 Zea mays HOM05D000389 ORTHO05D000287 5.2e-06 55.1 34 67.6
Actinidia11068 Actinidia chinensis HOM05D000389 ORTHO05D000287 6.8e-06 54.7 52 51.9
Ah.04g159030 Amaranthus hybridus HOM05D000389 ORTHO05D000287 6.8e-06 54.7 59 50.8
arahy.Tifrunner.gnm1.ann1.5P1FU9 Arachis hypogaea HOM05D000389 ORTHO05D000287 6.8e-06 54.7 55 52.7
arahy.Tifrunner.gnm1.ann1.VA11TJ Arachis hypogaea HOM05D000389 ORTHO05D000287 6.8e-06 54.7 55 52.7
EL10Ac9g20688 Beta vulgaris HOM05D000389 ORTHO05D000287 6.8e-06 54.7 66 40.9
CDE02G0745 Ceratophyllum demersum HOM05D000389 ORTHO05D000287 6.8e-06 54.7 44 59.1
ECA236G3204 Erigeron canadensis HOM05D000389 ORTHO05D000287 6.8e-06 54.7 35 74.3
Gohir.A13G086390 Gossypium hirsutum HOM05D000389 ORTHO05D000287 6.8e-06 54.7 54 53.7
HanXRQChr17g0542581 Helianthus annuus HOM05D000389 ORTHO05D000287 6.8e-06 54.7 51 52.9
Lsat_1_v5_gn_2_15001 Lactuca sativa HOM05D000389 ORTHO05D000287 6.8e-06 54.7 41 65.9
Lsat_1_v5_gn_8_132220 Lactuca sativa HOM05D000389 ORTHO05D000287 6.8e-06 54.7 54 51.9
Nitab4.5_0000294g0130 Nicotiana tabacum HOM05D000389 ORTHO05D000287 6.8e-06 54.7 47 55.3
Nitab4.5_0000611g0140 Nicotiana tabacum HOM05D000389 ORTHO05D000287 6.8e-06 54.7 35 68.6
Nitab4.5_0004488g0040 Nicotiana tabacum HOM05D000389 ORTHO05D000287 6.8e-06 54.7 35 68.6
Oeu052017.1 Olea europaea HOM05D000389 ORTHO05D000287 6.8e-06 54.7 35 71.4
Sopen05g034200 Solanum pennellii HOM05D000389 ORTHO05D000287 6.8e-06 54.7 58 53.4
Zm00001eb199570 Zea mays HOM05D000389 ORTHO05D000287 6.8e-06 54.7 34 67.6
Actinidia30481 Actinidia chinensis HOM05D000389 ORTHO05D000287 8.9e-06 54.3 54 50.0
BcaB04g21397 Brassica carinata HOM05D000389 ORTHO05D000287 8.9e-06 54.3 34 70.6
BcaC09g47719 Brassica carinata HOM05D000389 ORTHO05D000287 8.9e-06 54.3 34 70.6
BNapus_Darmor_BZH_scaffold_99p00250 Brassica napus HOM05D000389 ORTHO05D000287 8.9e-06 54.3 34 70.6
C03p40260 Brassica napus HOM05D000389 ORTHO05D000287 8.9e-06 54.3 34 70.6
BolC1t05879H Brassica oleracea HOM05D000389 ORTHO05D000287 8.9e-06 54.3 34 70.6
BolC3t16291H Brassica oleracea HOM05D000389 ORTHO05D000287 8.9e-06 54.3 34 70.6
BraA01t04619Z Brassica rapa HOM05D000389 ORTHO05D000287 8.9e-06 54.3 34 70.6
BraA03t12478Z Brassica rapa HOM05D000389 ORTHO05D000287 8.9e-06 54.3 34 70.6
CiPaw.04G123800 Carya illinoinensis HOM05D000389 ORTHO05D000287 8.9e-06 54.3 55 47.3
CDE05G2654 Ceratophyllum demersum HOM05D000389 ORTHO05D000287 8.9e-06 54.3 44 59.1
Thhalv10007474m.g Eutrema salsugineum HOM05D000389 ORTHO05D000287 8.9e-06 54.3 35 71.4
Oeu058387.1 Olea europaea HOM05D000389 ORTHO05D000287 8.9e-06 54.3 54 50.0
RcHm_v2.0_Chr2g0162371 Rosa chinensis HOM05D000389 ORTHO05D000287 8.9e-06 54.3 64 40.6
Sp3g01780 Schrenkiella parvula HOM05D000389 ORTHO05D000287 8.9e-06 54.3 34 70.6
TAR141G0002 Trochodendron aralioides HOM05D000389 ORTHO05D000287 8.9e-06 54.3 54 46.3
vmacro09273 Vaccinium macrocarpon HOM05D000389 ORTHO05D000287 8.9e-06 54.3 58 44.8


User provided reference genes

Program Settings