Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG00G005610 Citrullus lanatus HOM05D006680 ORTHO05D008206 4.2e-57 224.6 120 100.0
Thecc.04G286300 Theobroma cacao HOM05D006680 ORTHO05D008206 4.6e-48 194.5 117 82.9
Cpa.g.sc16.184 Carica papaya HOM05D006680 ORTHO05D008206 1.8e-47 192.6 124 80.6
Gohir.A10G164900 Gossypium hirsutum HOM05D006680 ORTHO05D008206 3.9e-47 191.4 121 81.0
Gohir.D10G171100 Gossypium hirsutum HOM05D006680 ORTHO05D008206 3.9e-47 191.4 121 81.0
Gorai.011G191100 Gossypium raimondii HOM05D006680 ORTHO05D008206 3.9e-47 191.4 121 81.0
Manes.15G011600 Manihot esculenta HOM05D006680 ORTHO05D008206 5.1e-47 191.0 123 80.5
CiPaw.01G147500 Carya illinoinensis HOM05D006680 ORTHO05D008206 8.8e-47 190.3 120 79.2
Atru.chr4.2870 Acer truncatum HOM05D006680 ORTHO05D008206 2.5e-46 188.7 122 81.1
Ciclev10006049m.g Citrus clementina HOM05D006680 ORTHO05D008206 3.3e-46 188.3 121 79.3
TWI09G0327 Tripterygium wilfordii HOM05D006680 ORTHO05D008206 5.7e-46 187.6 118 79.7
QL06p009590 Quercus lobata HOM05D006680 ORTHO05D008206 7.4e-46 187.2 119 79.0
Sed0015603 Sechium edule HOM05D006680 ORTHO05D008206 7.4e-46 187.2 120 80.8
Manes.03G196700 Manihot esculenta HOM05D006680 ORTHO05D008206 9.7e-46 186.8 118 79.7
VMungo1215G2846 Vigna mungo HOM05D006680 ORTHO05D008206 4.8e-45 184.5 119 81.5
Cc03_g01760 Coffea canephora HOM05D006680 ORTHO05D008206 6.3e-45 184.1 120 77.5
Glyma.07G246700 Glycine max HOM05D006680 ORTHO05D008206 8.2e-45 183.7 118 81.4
CiPaw.02G082300 Carya illinoinensis HOM05D006680 ORTHO05D008206 2.4e-44 182.2 120 75.8
Ca_21488_v3 Cicer arietinum L. HOM05D006680 ORTHO05D008206 2.4e-44 182.2 119 81.5
Migut.G00148 Erythranthe guttata HOM05D006680 ORTHO05D008206 3.1e-44 181.8 120 78.3
Prupe.1G134500 Prunus persica HOM05D006680 ORTHO05D008206 3.1e-44 181.8 115 83.5
Dinv29759 Davidia involucrata HOM05D006680 ORTHO05D008206 4.1e-44 181.4 117 76.9
Duzib151G0306 Durio zibethinus HOM05D006680 ORTHO05D008206 9.1e-44 180.3 122 79.5
THA.LOC104818922 Tarenaya hassleriana HOM05D006680 ORTHO05D008206 9.1e-44 180.3 122 78.7
CAN.G129.31 Capsicum annuum HOM05D006680 ORTHO05D008206 1.5e-43 179.5 120 75.8
Nitab4.5_0002761g0070 Nicotiana tabacum HOM05D006680 ORTHO05D008206 1.5e-43 179.5 121 77.7
Oeu001107.1 Olea europaea HOM05D006680 ORTHO05D008206 1.5e-43 179.5 120 76.7
Oeu063359.1 Olea europaea HOM05D006680 ORTHO05D008206 1.5e-43 179.5 120 78.3
Sabra10G0008200 Salix brachista HOM05D006680 ORTHO05D008206 1.5e-43 179.5 124 74.2
BraA05t22848Z Brassica rapa HOM05D006680 ORTHO05D008206 2.0e-43 179.1 114 80.7
Lalb_Chr13g0303561 Lupinus albus HOM05D006680 ORTHO05D008206 2.6e-43 178.7 116 81.9
MD13G1167200 Malus domestica HOM05D006680 ORTHO05D008206 2.6e-43 178.7 118 77.1
Potri.008G221000 Populus trichocarpa HOM05D006680 ORTHO05D008206 3.4e-43 178.3 123 75.6
A03p34950 Brassica napus HOM05D006680 ORTHO05D008206 5.9e-43 177.6 114 80.7
C03p42530 Brassica napus HOM05D006680 ORTHO05D008206 5.9e-43 177.6 114 80.7
BolC3t16523H Brassica oleracea HOM05D006680 ORTHO05D008206 5.9e-43 177.6 114 80.7
BraA03t12675Z Brassica rapa HOM05D006680 ORTHO05D008206 5.9e-43 177.6 114 80.7
Sopen01g028370 Solanum pennellii HOM05D006680 ORTHO05D008206 7.7e-43 177.2 120 75.8
Gohir.A09G238300 Gossypium hirsutum HOM05D006680 ORTHO05D008206 1.0e-42 176.8 121 73.6
A05p41250 Brassica napus HOM05D006680 ORTHO05D008206 1.3e-42 176.4 126 74.6
Gorai.006G261900 Gossypium raimondii HOM05D006680 ORTHO05D008206 1.7e-42 176.0 121 73.6
Duzib212G0294 Durio zibethinus HOM05D006680 ORTHO05D008206 2.2e-42 175.6 122 76.2
Gohir.D09G239200 Gossypium hirsutum HOM05D006680 ORTHO05D008206 2.2e-42 175.6 121 73.6
PGSC0003DMG400011317 Solanum tuberosum HOM05D006680 ORTHO05D008206 2.9e-42 175.3 120 73.3
Peaxi162Scf00246g00103 Petunia axillaris HOM05D006680 ORTHO05D008206 3.8e-42 174.9 117 76.1
SGA_v2.0_scaffold67G22622 Striga asiatica HOM05D006680 ORTHO05D008206 6.5e-42 174.1 120 72.5
RcHm_v2.0_Chr4g0422811 Rosa chinensis HOM05D006680 ORTHO05D008206 8.5e-42 173.7 115 76.5
BcaC05g29822 Brassica carinata HOM05D006680 ORTHO05D008206 1.1e-41 173.3 127 74.0
BolC5t34701H Brassica oleracea HOM05D006680 ORTHO05D008206 1.1e-41 173.3 127 74.0
Potri.010G013100 Populus trichocarpa HOM05D006680 ORTHO05D008206 1.4e-41 172.9 113 75.2
Lalb_Chr07g0177791 Lupinus albus HOM05D006680 ORTHO05D008206 4.2e-41 171.4 116 77.6
Peaxi162Scf00646g00027 Petunia axillaris HOM05D006680 ORTHO05D008206 5.5e-41 171.0 120 74.2
FAN07G2082 Fragaria x ananassa HOM05D006680 ORTHO05D008206 7.2e-41 170.6 115 73.9
FAN12G3601 Fragaria x ananassa HOM05D006680 ORTHO05D008206 7.2e-41 170.6 115 73.9
FAN17G1034 Fragaria x ananassa HOM05D006680 ORTHO05D008206 7.2e-41 170.6 115 73.9
FvH4_4g18340 Fragaria vesca HOM05D006680 ORTHO05D008206 9.4e-41 170.2 115 73.9
MSTRG.3906 Avicennia marina HOM05D006680 ORTHO05D008206 2.1e-40 169.1 120 71.7
Nitab4.5_0003466g0010 Nicotiana tabacum HOM05D006680 ORTHO05D008206 2.1e-40 169.1 120 70.8
FAN12G3976 Fragaria x ananassa HOM05D006680 ORTHO05D008206 3.6e-40 168.3 114 73.7
Medtr4g120020 Medicago truncatula HOM05D006680 ORTHO05D008206 3.6e-40 168.3 118 76.3
TAR370G0002 Trochodendron aralioides HOM05D006680 ORTHO05D008206 3.9e-39 164.9 119 74.8
Solyc12g099500.2 Solanum lycopersicum HOM05D006680 ORTHO05D008206 5.1e-39 164.5 116 71.6
Sopen12g034170 Solanum pennellii HOM05D006680 ORTHO05D008206 5.1e-39 164.5 116 71.6
Aqoxy2G02951 Aquilegia oxysepala HOM05D006680 ORTHO05D008206 2.6e-38 162.2 118 71.2
Hma1.2p1_1185F.1_g265000 Hydrangea macrophylla HOM05D006680 ORTHO05D008206 4.4e-38 161.4 120 72.5
CSS0014864 Camellia sinensis var. sinensis HOM05D006680 ORTHO05D008206 5.7e-38 161.0 121 71.9
Lsat_1_v5_gn_6_95660 Lactuca sativa HOM05D006680 ORTHO05D008206 5.7e-38 161.0 120 70.8
PGSC0003DMG400004705 Solanum tuberosum HOM05D006680 ORTHO05D008206 5.7e-38 161.0 117 71.8
DCAR_027070 Daucus carota HOM05D006680 ORTHO05D008206 7.4e-38 160.6 113 71.7
CSS0010580 Camellia sinensis var. sinensis HOM05D006680 ORTHO05D008206 9.7e-38 160.2 121 71.9
Carub.0003s0642 Capsella rubella HOM05D006680 ORTHO05D008206 9.7e-38 160.2 98 82.7
CANSAT78G1139 Cannabis sativa HOM05D006680 ORTHO05D008206 1.3e-37 159.8 96 85.4
MBI19_g25353_MAGBIO Magnolia biondii HOM05D006680 ORTHO05D008206 1.3e-37 159.8 121 70.2
ECA240G4018 Erigeron canadensis HOM05D006680 ORTHO05D008206 1.7e-37 159.5 126 67.5
AT3G06890 Arabidopsis thaliana HOM05D006680 ORTHO05D008206 2.2e-37 159.1 101 80.2
CARHR081510 Cardamine hirsuta HOM05D006680 ORTHO05D008206 2.2e-37 159.1 99 81.8
DCAR_002469 Daucus carota HOM05D006680 ORTHO05D008206 2.2e-37 159.1 118 67.8
Lj4g0016566 Lotus japonicus HOM05D006680 ORTHO05D008206 2.2e-37 159.1 91 86.8
TPR.G3164 Trifolium pratense HOM05D006680 ORTHO05D008206 2.2e-37 159.1 91 86.8
Thhalv10021931m.g Eutrema salsugineum HOM05D006680 ORTHO05D008206 4.8e-37 157.9 101 79.2
Nn4g25792 Nelumbo nucifera HOM05D006680 ORTHO05D008206 4.8e-37 157.9 120 70.0
Sc19g0005290 Simmondsia chinensis HOM05D006680 ORTHO05D008206 8.2e-37 157.1 121 67.8
Sc19g0005370 Simmondsia chinensis HOM05D006680 ORTHO05D008206 8.2e-37 157.1 121 67.8
AL3G18020 Arabidopsis lyrata HOM05D006680 ORTHO05D008206 1.1e-36 156.8 100 80.0
Nn3g21479 Nelumbo nucifera HOM05D006680 ORTHO05D008206 2.4e-36 155.6 107 76.6
Ah.08g214570 Amaranthus hybridus HOM05D006680 ORTHO05D008206 4.1e-36 154.8 121 69.4
Psat4g026840 Pisum sativum HOM05D006680 ORTHO05D008206 1.2e-35 153.3 92 83.7
HanXRQChr13g0419971 Helianthus annuus HOM05D006680 ORTHO05D008206 1.5e-35 152.9 117 67.5
Sp3g05850 Schrenkiella parvula HOM05D006680 ORTHO05D008206 7.7e-35 150.6 97 79.4
AUR62040379 Chenopodium quinoa HOM05D006680 ORTHO05D008206 1.3e-34 149.8 121 66.1
Phvul.003G097003 Phaseolus vulgaris HOM05D006680 ORTHO05D008206 2.2e-34 149.1 92 81.5
CAN.G484.39 Capsicum annuum HOM05D006680 ORTHO05D008206 2.9e-34 148.7 118 66.1
PGR004G0310 Punica granatum HOM05D006680 ORTHO05D008206 6.5e-34 147.5 122 67.2
MBI18_g06870_MAGBIO Magnolia biondii HOM05D006680 ORTHO05D008206 4.2e-33 144.8 121 64.5
DCAR_030521 Daucus carota HOM05D006680 ORTHO05D008206 9.4e-33 143.7 118 61.9
PSO832G1781 Papaver somniferum HOM05D006680 ORTHO05D008206 2.1e-32 142.5 122 61.5
PSO210G6323 Papaver somniferum HOM05D006680 ORTHO05D008206 3.6e-32 141.7 122 61.5
PGR031G3343 Punica granatum HOM05D006680 ORTHO05D008206 8.0e-32 140.6 116 61.2
PSO017G4993 Papaver somniferum HOM05D006680 ORTHO05D008206 3.3e-30 135.2 99 74.7
Sabra10G0008300 Salix brachista HOM05D006680 ORTHO05D008206 3.3e-30 135.2 110 65.5
PSO170G5007 Papaver somniferum HOM05D006680 ORTHO05D008206 9.7e-30 133.7 99 73.7
HanXRQChr03g0089341 Helianthus annuus HOM05D006680 ORTHO05D008206 7.0e-28 127.5 120 58.3
Os03g0343800 Oryza sativa ssp. japonica HOM05D006680 ORTHO05D008206 4.5e-27 124.8 108 62.0
MD16G1168200 Malus domestica HOM05D006680 ORTHO05D008206 2.2e-26 122.5 121 60.3
HPP92_000110 Vanilla planifolia HOM05D006680 ORTHO05D008206 5.0e-26 121.3 111 58.6
Thecc.09G272700 Theobroma cacao HOM05D006680 ORTHO05D008206 8.5e-26 120.6 82 74.4
Zm00001eb124100 Zea mays HOM05D006680 ORTHO05D008206 1.5e-25 119.8 109 58.7
ATR0796G044 Amborella trichopoda HOM05D006680 ORTHO05D008206 4.2e-25 118.2 113 55.8
Rhsim04G0223700 Rhododendron simsii HOM05D006680 ORTHO05D008206 5.5e-25 117.9 96 62.5
Rhsim09G0007300 Rhododendron simsii HOM05D006680 ORTHO05D008206 5.5e-25 117.9 96 62.5
unitig_32.g11869 Utricularia gibba HOM05D006680 ORTHO05D008206 7.2e-25 117.5 120 53.3
Thecc.05G268700 Theobroma cacao HOM05D006680 ORTHO05D008206 2.1e-24 115.9 88 68.2
Zm00001eb016470 Zea mays HOM05D006680 ORTHO05D008206 4.7e-24 114.8 111 56.8
Eucgr.H03932 Eucalyptus grandis HOM05D006680 ORTHO05D008206 5.2e-23 111.3 126 50.8
Zm00001eb394930 Zea mays HOM05D006680 ORTHO05D008206 3.7e-21 105.1 92 63.0
TAR633G0386 Trochodendron aralioides HOM05D006680 ORTHO05D008206 4.1e-20 101.7 124 53.2
MELO3C006671.2 Cucumis melo HOM05D006680 ORTHO05D008206 1.7e-18 96.3 52 98.1
Os07g0673801 Oryza sativa ssp. japonica HOM05D006680 ORTHO05D008206 8.0e-16 87.4 110 47.3
SalBow5G0837 Salvia bowleyana HOM05D006680 ORTHO05D008206 3.0e-15 85.5 117 41.9
SalBow3G3394 Salvia bowleyana HOM05D003064 ORTHO05D001733 8.9e-07 57.4 61 44.3
Dinv44367 Davidia involucrata HOM05D010970 ORTHO05D012912 2.6e-06 55.8 33 78.8
MSTRG.18858 Avicennia marina HOM05D003064 ORTHO05D001733 9.8e-06 53.9 62 45.2


User provided reference genes

Program Settings