Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG00G005120 Citrullus lanatus HOM05D005262 ORTHO05D006590 3.1e-125 451.8 230 100.0
ClCG05G024080 Citrullus lanatus HOM05D005262 ORTHO05D006590 1.0e-107 393.7 209 96.7
Sed0024226 Sechium edule HOM05D005262 ORTHO05D006590 2.1e-89 332.8 185 90.8
CsaV3_5G032960 Cucumis sativus L. HOM05D005262 ORTHO05D006590 2.6e-87 325.9 186 88.7
QL03p069106 Quercus lobata HOM05D005262 ORTHO05D006590 3.7e-86 322.0 186 86.0
QL93p1999_0168 Quercus lobata HOM05D005262 ORTHO05D006590 3.7e-86 322.0 186 86.0
MELO3C012117.2 Cucumis melo HOM05D005262 ORTHO05D006590 1.4e-85 320.1 188 86.2
CiPaw.05G130500 Carya illinoinensis HOM05D005262 ORTHO05D006590 2.4e-85 319.3 188 83.5
CSS0022308 Camellia sinensis var. sinensis HOM05D005262 ORTHO05D006590 1.3e-83 313.5 186 82.8
Dinv34128 Davidia involucrata HOM05D005262 ORTHO05D006590 1.7e-83 313.2 193 81.3
TWI23G0893 Tripterygium wilfordii HOM05D005262 ORTHO05D006590 1.6e-81 306.6 186 80.1
GSVIVG01005152001 Vitis vinifera HOM05D005262 ORTHO05D006590 6.7e-80 301.2 186 80.1
Cpa.g.sc57.36 Carica papaya HOM05D005262 ORTHO05D006590 1.2e-79 300.4 189 78.3
Nitab4.5_0005903g0020 Nicotiana tabacum HOM05D005262 ORTHO05D006590 1.5e-79 300.1 186 81.2
TWI59G0657 Tripterygium wilfordii HOM05D005262 ORTHO05D006590 2.0e-79 299.7 186 79.0
Nitab4.5_0001147g0090 Nicotiana tabacum HOM05D005262 ORTHO05D006590 7.5e-79 297.7 186 79.6
Rhsim09G0138500 Rhododendron simsii HOM05D005262 ORTHO05D006590 7.5e-79 297.7 193 77.7
Sc04g0007950 Simmondsia chinensis HOM05D005262 ORTHO05D006590 7.5e-79 297.7 186 79.0
Lj7A251G27 Lonicera japonica HOM05D005262 ORTHO05D006590 1.3e-78 297.0 190 76.3
Oeu054855.1 Olea europaea HOM05D005262 ORTHO05D006590 2.2e-78 296.2 186 79.6
GSVIVG01012217001 Vitis vinifera HOM05D005262 ORTHO05D006590 2.8e-78 295.8 186 78.5
Cfa008943 Carpinus fangiana HOM05D005262 ORTHO05D006590 4.8e-78 295.0 186 78.5
Hma1.2p1_1954F.1_g308920 Hydrangea macrophylla HOM05D005262 ORTHO05D006590 6.3e-78 294.7 205 72.7
Thecc.10G075900 Theobroma cacao HOM05D005262 ORTHO05D006590 6.3e-78 294.7 185 81.1
CAN.G293.9 Capsicum annuum HOM05D005262 ORTHO05D006590 8.2e-78 294.3 186 79.0
Solyc07g017410.3 Solanum lycopersicum HOM05D005262 ORTHO05D006590 1.4e-77 293.5 186 78.5
Sopen07g006120 Solanum pennellii HOM05D005262 ORTHO05D006590 1.4e-77 293.5 186 78.5
PGSC0003DMG400009555 Solanum tuberosum HOM05D005262 ORTHO05D006590 1.4e-77 293.5 186 78.5
MD07G1136300 Malus domestica HOM05D005262 ORTHO05D006590 2.4e-77 292.7 186 78.0
Prupe.2G171300 Prunus persica HOM05D005262 ORTHO05D006590 3.1e-77 292.4 185 78.4
Lj8C474T0 Lonicera japonica HOM05D005262 ORTHO05D006590 7.0e-77 291.2 184 77.2
PGR102G3250 Punica granatum HOM05D005262 ORTHO05D006590 1.2e-76 290.4 185 78.4
FAN19G1549 Fragaria x ananassa HOM05D005262 ORTHO05D006590 1.6e-76 290.0 193 76.2
FAN26G2856 Fragaria x ananassa HOM05D005262 ORTHO05D006590 2.0e-76 289.7 187 77.5
MD01G1063000 Malus domestica HOM05D005262 ORTHO05D006590 2.0e-76 289.7 186 77.4
Cc00_g16620 Coffea canephora HOM05D005262 ORTHO05D006590 1.0e-75 287.3 186 75.3
TAR496G0001 Trochodendron aralioides HOM05D005262 ORTHO05D006590 1.3e-75 287.0 185 75.7
TAR629G1254 Trochodendron aralioides HOM05D005262 ORTHO05D006590 1.3e-75 287.0 185 75.7
Atru.chr11.1609 Acer truncatum HOM05D005262 ORTHO05D006590 2.2e-75 286.2 185 77.3
FAN23G1362 Fragaria x ananassa HOM05D005262 ORTHO05D006590 2.2e-75 286.2 187 77.5
Duzib114G0995 Durio zibethinus HOM05D005262 ORTHO05D006590 1.5e-74 283.5 185 77.3
PSO063G7616 Papaver somniferum HOM05D005262 ORTHO05D006590 1.9e-74 283.1 189 76.7
FvH4_1g30250 Fragaria vesca HOM05D005262 ORTHO05D006590 2.5e-74 282.7 187 76.5
Lj7C254T2 Lonicera japonica HOM05D005262 ORTHO05D006590 7.2e-74 281.2 185 74.6
Lj8C444T0 Lonicera japonica HOM05D005262 ORTHO05D006590 7.2e-74 281.2 206 69.4
Lj6g0009238 Lotus japonicus HOM05D005262 ORTHO05D006590 1.2e-73 280.4 186 75.3
PSO832G0345 Papaver somniferum HOM05D005262 ORTHO05D006590 1.2e-73 280.4 189 75.7
Aqoxy1G02417 Aquilegia oxysepala HOM05D005262 ORTHO05D006590 2.1e-73 279.6 194 71.6
CANSAT80G0446 Cannabis sativa HOM05D005262 ORTHO05D006590 2.7e-73 279.3 176 77.3
Lj2g0009005 Lotus japonicus HOM05D005262 ORTHO05D006590 3.6e-73 278.9 186 74.2
Peaxi162Scf00320g00123 Petunia axillaris HOM05D005262 ORTHO05D006590 3.6e-73 278.9 201 72.1
Gohir.D04G003700 Gossypium hirsutum HOM05D005262 ORTHO05D006590 1.0e-72 277.3 186 76.3
Gorai.012G004900 Gossypium raimondii HOM05D005262 ORTHO05D006590 1.0e-72 277.3 186 76.3
HPP92_008614 Vanilla planifolia HOM05D005262 ORTHO05D006590 1.0e-72 277.3 186 72.0
TAR365G0711 Trochodendron aralioides HOM05D005262 ORTHO05D006590 1.8e-72 276.6 190 73.2
VMungo1215G2947 Vigna mungo HOM05D005262 ORTHO05D006590 1.8e-72 276.6 188 73.9
Ciclev10032849m.g Citrus clementina HOM05D005262 ORTHO05D006590 6.8e-72 274.6 186 73.7
Manes.01G033800 Manihot esculenta HOM05D005262 ORTHO05D006590 6.8e-72 274.6 190 72.6
AUR62032822 Chenopodium quinoa HOM05D005262 ORTHO05D006590 8.8e-72 274.2 185 75.1
DCAR_013139 Daucus carota HOM05D005262 ORTHO05D006590 8.8e-72 274.2 186 72.6
Gohir.A05G412300 Gossypium hirsutum HOM05D005262 ORTHO05D006590 1.2e-71 273.9 186 75.3
SGA_v2.0_scaffold25G10746 Striga asiatica HOM05D005262 ORTHO05D006590 1.5e-71 273.5 187 71.7
Migut.O00263 Erythranthe guttata HOM05D005262 ORTHO05D006590 2.0e-71 273.1 182 74.2
Glyma.01G052200 Glycine max HOM05D005262 ORTHO05D006590 2.6e-71 272.7 188 74.5
Gohir.A10G054500 Gossypium hirsutum HOM05D005262 ORTHO05D006590 2.6e-71 272.7 178 77.5
Aqoxy2G00811 Aquilegia oxysepala HOM05D005262 ORTHO05D006590 5.7e-71 271.6 186 71.5
Ca_02973_v3 Cicer arietinum L. HOM05D005262 ORTHO05D006590 7.5e-71 271.2 188 72.9
Lalb_Chr12g0202851 Lupinus albus HOM05D005262 ORTHO05D006590 7.5e-71 271.2 189 74.6
Glyma.02G110400 Glycine max HOM05D005262 ORTHO05D006590 1.7e-70 270.0 188 73.4
Psat1g094200 Pisum sativum HOM05D005262 ORTHO05D006590 1.7e-70 270.0 188 72.9
TPR.G4647 Trifolium pratense HOM05D005262 ORTHO05D006590 4.8e-70 268.5 186 72.0
MSTRG.11557 Avicennia marina HOM05D005262 ORTHO05D006590 6.3e-70 268.1 187 71.7
EL10Ac8g18975 Beta vulgaris HOM05D005262 ORTHO05D006590 1.1e-69 267.3 182 74.2
Gorai.011G060300 Gossypium raimondii HOM05D005262 ORTHO05D006590 1.4e-69 266.9 178 75.8
Phvul.003G046600 Phaseolus vulgaris HOM05D005262 ORTHO05D006590 1.8e-69 266.5 188 72.3
QL07p005102 Quercus lobata HOM05D005262 ORTHO05D006590 1.8e-69 266.5 157 84.7
HanXRQChr15g0476911 Helianthus annuus HOM05D005262 ORTHO05D006590 2.4e-69 266.2 184 71.2
Potri.010G165500 Populus trichocarpa HOM05D005262 ORTHO05D006590 4.1e-69 265.4 184 73.9
SGA_v2.0_scaffold90G27753 Striga asiatica HOM05D005262 ORTHO05D006590 5.4e-69 265.0 187 70.6
Os12g0209100 Oryza sativa ssp. japonica HOM05D005262 ORTHO05D006590 9.1e-69 264.2 182 70.3
Medtr8g006800 Medicago truncatula HOM05D005262 ORTHO05D006590 1.2e-68 263.8 181 71.3
arahy.Tifrunner.gnm1.ann1.XG4VM3 Arachis hypogaea HOM05D005262 ORTHO05D006590 2.0e-68 263.1 202 67.8
arahy.Tifrunner.gnm1.ann1.EK09V6 Arachis hypogaea HOM05D005262 ORTHO05D006590 3.5e-68 262.3 202 67.8
ECA246G3166 Erigeron canadensis HOM05D006399 ORTHO05D007988 2.3e-67 259.6 186 68.8
Medtr2g087760 Medicago truncatula HOM05D005262 ORTHO05D006590 2.9e-67 259.2 174 73.6
Nn4g23238 Nelumbo nucifera HOM05D005262 ORTHO05D006590 5.0e-67 258.5 152 82.9
HanXRQChr17g0545311 Helianthus annuus HOM05D005262 ORTHO05D006590 1.1e-66 257.3 184 69.6
Sabra10G0125800 Salix brachista HOM05D005262 ORTHO05D006590 2.1e-65 253.1 212 64.2
COL.COLO4_28415 Corchorus olitorius HOM05D005262 ORTHO05D006590 3.6e-65 252.3 178 70.8
ATR0810G029 Amborella trichopoda HOM05D005262 ORTHO05D006590 4.7e-65 251.9 187 67.9
Hund04408 Selenicereus undatus HOM05D005262 ORTHO05D006590 4.7e-65 251.9 272 52.9
Zm00001eb163570 Zea mays HOM05D005262 ORTHO05D006590 4.7e-65 251.9 185 68.1
SalBow6G1526 Salvia bowleyana HOM05D005262 ORTHO05D006590 2.6e-63 246.1 184 66.3
Lsat_1_v5_gn_3_51960 Lactuca sativa HOM05D005262 ORTHO05D006590 3.7e-62 242.3 188 64.4
Haze_11969 Corylus avellana HOM05D001063 ORTHO05D000986 8.3e-62 241.1 154 76.6
CDE02G1435 Ceratophyllum demersum HOM05D005262 ORTHO05D006590 1.4e-61 240.4 187 66.3
unitig_749.g14151 Utricularia gibba HOM05D005262 ORTHO05D006590 3.1e-61 239.2 182 64.8
AUR62005827 Chenopodium quinoa HOM05D006399 ORTHO05D007988 7.8e-60 234.6 191 64.9
Eucgr.I00218 Eucalyptus grandis HOM05D005262 ORTHO05D006590 6.6e-59 231.5 160 73.8
THA.LOC104818198 Tarenaya hassleriana HOM05D005262 ORTHO05D006590 4.7e-57 225.3 186 58.1
SEGI_18406 Sequoiadendron giganteum HOM05D005262 ORTHO05D006590 2.9e-54 216.1 178 58.4
Aa31LG7G8380 Aethionema arabicum HOM05D005262 ORTHO05D006590 7.0e-53 211.5 185 57.3
vmacro10351 Vaccinium macrocarpon HOM05D005262 ORTHO05D006590 1.2e-52 210.7 185 62.7
CARHR025210 Cardamine hirsuta HOM05D005262 ORTHO05D006590 3.5e-52 209.1 185 55.7
Carub.0001s2427 Capsella rubella HOM05D005262 ORTHO05D006590 3.0e-51 206.1 185 54.6
Thhalv10008835m.g Eutrema salsugineum HOM05D005262 ORTHO05D006590 1.1e-50 204.1 185 55.7
AL1G38960 Arabidopsis lyrata HOM05D005262 ORTHO05D006590 1.5e-50 203.8 185 54.6
CAN.G228.3 Capsicum annuum HOM05D005262 ORTHO05D006590 1.6e-49 200.3 207 55.6
Sp1g22060 Schrenkiella parvula HOM05D005262 ORTHO05D006590 2.8e-49 199.5 185 54.6
AT1G26750 Arabidopsis thaliana HOM05D005262 ORTHO05D006590 6.2e-49 198.4 185 54.1
A07p13080 Brassica napus HOM05D005262 ORTHO05D006590 8.9e-48 194.5 185 54.1
BraA07t29079Z Brassica rapa HOM05D005262 ORTHO05D006590 3.4e-47 192.6 185 54.1
BcaC06g35126 Brassica carinata HOM05D005262 ORTHO05D006590 6.4e-46 188.3 185 53.0
BcaB03g14087 Brassica carinata HOM05D005262 ORTHO05D006590 1.9e-45 186.8 185 52.4
C07p19560 Brassica napus HOM05D005262 ORTHO05D006590 1.9e-45 186.8 185 52.4
BolC7t42473H Brassica oleracea HOM05D005262 ORTHO05D006590 1.9e-45 186.8 185 52.4
RcHm_v2.0_Chr6g0271051 Rosa chinensis HOM05D005262 ORTHO05D006590 3.5e-44 182.6 183 57.9
C05p24220 Brassica napus HOM05D005262 ORTHO05D006590 4.6e-44 182.2 185 51.4
ClCG08G001930 Citrullus lanatus HOM05D005262 ORTHO05D006590 6.0e-44 181.8 115 83.5
A09p40160 Brassica napus HOM05D005262 ORTHO05D006590 3.9e-43 179.1 185 50.3
BraA09t39514Z Brassica rapa HOM05D005262 ORTHO05D006590 3.9e-43 179.1 185 50.3
Eucgr.L00661 Eucalyptus grandis HOM05D005262 ORTHO05D006590 8.1e-41 171.4 112 77.7
BolC5t31158H Brassica oleracea HOM05D005262 ORTHO05D006590 1.8e-40 170.2 148 58.8
Gohir.D10G056500 Gossypium hirsutum HOM05D005262 ORTHO05D006590 3.7e-38 162.5 155 60.0
BcaC05g26391 Brassica carinata HOM05D005262 ORTHO05D006590 2.3e-35 153.3 185 47.0
RcHm_v2.0_Chr7g0220341 Rosa chinensis HOM05D005262 ORTHO05D006590 1.6e-25 120.6 85 69.4
Haze_01349 Corylus avellana HOM05D005262 ORTHO05D006590 4.8e-25 119.0 85 70.6
Oeu021067.1 Olea europaea HOM05D005262 ORTHO05D006590 1.1e-24 117.9 78 69.2
Glyma.11G251200 Glycine max HOM05D005262 ORTHO05D006590 6.9e-24 115.2 74 73.0
Lj3C1034G10 Lonicera japonica HOM05D006399 ORTHO05D007988 2.6e-23 113.2 79 70.9
SEGI_29332 Sequoiadendron giganteum HOM05D005262 ORTHO05D006590 2.7e-20 103.2 87 56.3
AagrBONN_evm.TU.Sc2ySwM_228.1458 Anthoceros agrestis HOM05D005262 ORTHO05D006590 2.3e-19 100.1 151 43.0
Pp3c14_7320 Physcomitrium patens HOM05D005262 ORTHO05D006590 6.6e-19 98.6 155 40.0
RcHm_v2.0_Chr7g0220351 Rosa chinensis HOM05D005262 ORTHO05D006590 6.6e-19 98.6 61 77.0
SEGI_23137 Sequoiadendron giganteum HOM05D005262 ORTHO05D006590 2.1e-17 93.6 81 56.8
SEGI_36558 Sequoiadendron giganteum HOM05D005262 ORTHO05D006590 2.8e-17 93.2 75 58.7
SEGI_39727 Sequoiadendron giganteum HOM05D005262 ORTHO05D006590 8.1e-17 91.7 75 57.3
CBR_g30169 Chara braunii HOM05D005262 ORTHO05D006590 1.8e-16 90.5 159 34.6
Mapoly0001s0053 Marchantia polymorpha HOM05D005262 ORTHO05D006590 1.2e-15 87.8 119 39.5
SHI20784 Sapria himalayana HOM05D005262 ORTHO05D006590 5.8e-15 85.5 83 55.4
Eucgr.L00657 Eucalyptus grandis HOM05D005262 ORTHO05D006590 1.3e-11 74.3 91 53.8
FAN15G0396 Fragaria x ananassa HOM05D005262 ORTHO05D006590 2.3e-11 73.6 65 61.5
Zm00001eb076020 Zea mays HOM05D005262 ORTHO05D444176 1.5e-07 60.8 57 50.9


User provided reference genes

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