Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG00G004230 Citrullus lanatus HOM05D005138 ORTHO05D006318 2.8e-42 174.9 88 100.0
ClCG05G026940 Citrullus lanatus HOM05D005138 ORTHO05D006318 2.8e-42 174.9 88 100.0
MELO3C012486.2 Cucumis melo HOM05D005138 ORTHO05D006318 3.3e-27 124.8 67 89.6
Sed0002262 Sechium edule HOM05D005138 ORTHO05D006318 1.3e-26 122.9 62 93.5
CiPaw.14G008900 Carya illinoinensis HOM05D005138 ORTHO05D006318 4.0e-25 117.9 62 87.1
Hma1.2p1_0837F.1_g226140 Hydrangea macrophylla HOM05D005138 ORTHO05D006318 6.9e-25 117.1 62 88.7
RcHm_v2.0_Chr1g0325871 Rosa chinensis HOM05D005138 ORTHO05D006318 1.2e-24 116.3 62 88.7
Actinidia34769 Actinidia chinensis HOM05D005138 ORTHO05D006318 2.0e-24 115.5 62 90.3
Manes.11G007200 Manihot esculenta HOM05D005138 ORTHO05D006318 2.0e-24 115.5 62 87.1
Thecc.10G149000 Theobroma cacao HOM05D005138 ORTHO05D006318 2.6e-24 115.2 62 87.1
Haze_03004 Corylus avellana HOM05D005138 ORTHO05D006318 3.4e-24 114.8 60 86.7
Duzib128G1035 Durio zibethinus HOM05D005138 ORTHO05D006318 3.4e-24 114.8 62 85.5
FAN03G2670 Fragaria x ananassa HOM05D005138 ORTHO05D006318 3.4e-24 114.8 62 87.1
FAN06G4838 Fragaria x ananassa HOM05D005138 ORTHO05D006318 3.4e-24 114.8 62 87.1
CSS0020361 Camellia sinensis var. sinensis HOM05D005138 ORTHO05D006318 4.5e-24 114.4 62 87.1
CsaV3_5G036890 Cucumis sativus L. HOM05D005138 ORTHO05D006318 4.5e-24 114.4 57 94.7
CiPaw.13G015300 Carya illinoinensis HOM05D005138 ORTHO05D006318 5.8e-24 114.0 60 86.7
PGR044G2178 Punica granatum HOM05D005138 ORTHO05D006318 5.8e-24 114.0 62 85.5
Sc10g0004520 Simmondsia chinensis HOM05D005138 ORTHO05D006318 5.8e-24 114.0 62 83.9
Prupe.2G041500 Prunus persica HOM05D005138 ORTHO05D006318 7.6e-24 113.6 62 87.1
Manes.04G157100 Manihot esculenta HOM05D005138 ORTHO05D006318 1.0e-23 113.2 62 85.5
CDE04G1620 Ceratophyllum demersum HOM05D005138 ORTHO05D006318 1.3e-23 112.8 62 85.5
MD07G1047200 Malus domestica HOM05D005138 ORTHO05D006318 1.3e-23 112.8 62 87.1
COL.COLO4_20705 Corchorus olitorius HOM05D005138 ORTHO05D006318 1.7e-23 112.5 63 82.5
Duzib114G0920 Durio zibethinus HOM05D005138 ORTHO05D006318 1.7e-23 112.5 62 83.9
Cfa010943 Carpinus fangiana HOM05D005138 ORTHO05D006318 2.2e-23 112.1 60 83.3
FvH4_7g03540 Fragaria vesca HOM05D005138 ORTHO05D006318 2.2e-23 112.1 62 85.5
SGA_v2.0_scaffold232G43489 Striga asiatica HOM05D005138 ORTHO05D006318 2.9e-23 111.7 68 77.9
HPP92_021197 Vanilla planifolia HOM05D005138 ORTHO05D006318 3.8e-23 111.3 62 83.9
HanXRQChr11g0341771 Helianthus annuus HOM05D005138 ORTHO05D006318 4.9e-23 110.9 62 82.3
MD07G1046900 Malus domestica HOM05D005138 ORTHO05D006318 4.9e-23 110.9 65 80.0
Gorai.011G218700 Gossypium raimondii HOM05D005138 ORTHO05D006318 6.5e-23 110.5 62 82.3
Nn7g36804 Nelumbo nucifera HOM05D005138 ORTHO05D006318 6.5e-23 110.5 62 82.3
TAR362G0697 Trochodendron aralioides HOM05D005138 ORTHO05D006318 6.5e-23 110.5 62 83.9
Gohir.A10G188000 Gossypium hirsutum HOM05D005138 ORTHO05D006318 8.4e-23 110.2 62 82.3
Gohir.D10G195900 Gossypium hirsutum HOM05D005138 ORTHO05D006318 8.4e-23 110.2 62 82.3
Hund13385 Selenicereus undatus HOM05D005138 ORTHO05D006318 8.4e-23 110.2 62 80.6
Atru.chr12.1279 Acer truncatum HOM05D005138 ORTHO05D006318 1.1e-22 109.8 62 82.3
FAN10G0593 Fragaria x ananassa HOM05D005138 ORTHO05D006318 1.1e-22 109.8 62 83.9
FAN10G2449 Fragaria x ananassa HOM05D005138 ORTHO05D006318 1.1e-22 109.8 62 83.9
THA.LOC104826756 Tarenaya hassleriana HOM05D005138 ORTHO05D006318 1.1e-22 109.8 62 82.3
Ah.10g030100 Amaranthus hybridus HOM05D005138 ORTHO05D006318 1.4e-22 109.4 62 82.3
ATR1096G082 Amborella trichopoda HOM05D005138 ORTHO05D006318 1.4e-22 109.4 60 81.7
Eucgr.G03216 Eucalyptus grandis HOM05D005138 ORTHO05D006318 1.4e-22 109.4 62 83.9
MD02G1279300 Malus domestica HOM05D005138 ORTHO05D006318 1.4e-22 109.4 62 83.9
Cc07_g21240 Coffea canephora HOM05D005138 ORTHO05D006318 1.9e-22 109.0 60 81.7
QL04p018722 Quercus lobata HOM05D005138 ORTHO05D006318 1.9e-22 109.0 61 83.6
DCAR_029715 Daucus carota HOM05D005138 ORTHO05D006318 2.5e-22 108.6 62 80.6
Peaxi162Scf00062g02216 Petunia axillaris HOM05D005138 ORTHO05D006318 2.5e-22 108.6 84 63.1
SGA_v2.0_scaffold43G16284 Striga asiatica HOM05D005138 ORTHO05D006318 2.5e-22 108.6 62 82.3
Lsat_1_v5_gn_1_116501 Lactuca sativa HOM05D005138 ORTHO05D006318 4.2e-22 107.8 60 83.3
PSO384G1335 Papaver somniferum HOM05D005138 ORTHO05D006318 4.2e-22 107.8 62 82.3
Dinv44706 Davidia involucrata HOM05D005138 ORTHO05D006318 5.5e-22 107.5 68 73.5
PSO135G0826 Papaver somniferum HOM05D005138 ORTHO05D006318 5.5e-22 107.5 62 82.3
AUR62031745 Chenopodium quinoa HOM05D005138 ORTHO05D006318 7.1e-22 107.1 62 80.6
AUR62032630 Chenopodium quinoa HOM05D005138 ORTHO05D006318 7.1e-22 107.1 62 80.6
PGSC0003DMG400004276 Solanum tuberosum HOM05D005138 ORTHO05D006318 7.1e-22 107.1 62 79.0
vmacro10390 Vaccinium macrocarpon HOM05D005138 ORTHO05D006318 7.1e-22 107.1 62 80.6
Ciclev10002826m.g Citrus clementina HOM05D005138 ORTHO05D006318 9.3e-22 106.7 62 80.6
Nitab4.5_0004389g0010 Nicotiana tabacum HOM05D005138 ORTHO05D006318 1.2e-21 106.3 67 74.6
GSVIVG01036643001 Vitis vinifera HOM05D005138 ORTHO05D006318 1.2e-21 106.3 90 60.0
Cpa.g.sc169.49 Carica papaya HOM05D005138 ORTHO05D006318 1.6e-21 105.9 62 82.3
Peaxi162Scf01042g00115 Petunia axillaris HOM05D005138 ORTHO05D006318 1.6e-21 105.9 61 78.7
MBI13_g09225_MAGBIO Magnolia biondii HOM05D005138 ORTHO05D006318 2.7e-21 105.1 62 82.3
Nitab4.5_0010402g0010 Nicotiana tabacum HOM05D005138 ORTHO05D006318 3.5e-21 104.8 60 80.0
Os07g0640100 Oryza sativa ssp. japonica HOM05D005138 ORTHO05D006318 3.5e-21 104.8 68 75.0
Ah.12g059980 Amaranthus hybridus HOM05D005138 ORTHO05D006318 4.6e-21 104.4 62 82.3
EL10Ac2g02769 Beta vulgaris HOM05D005138 ORTHO05D000392 4.6e-21 104.4 60 80.0
BraA03t12909Z Brassica rapa HOM05D005138 ORTHO05D006318 4.6e-21 104.4 72 72.2
TWI38G0338 Tripterygium wilfordii HOM05D005138 ORTHO05D006318 1.0e-20 103.2 62 72.6
Aa31LG3G6480 Aethionema arabicum HOM05D005138 ORTHO05D006318 1.8e-20 102.4 62 82.3
C05p55530 Brassica napus HOM05D005138 ORTHO05D006318 1.8e-20 102.4 63 81.0
BolC3t16831H Brassica oleracea HOM05D005138 ORTHO05D006318 2.3e-20 102.1 67 76.1
Hund15745 Selenicereus undatus HOM05D005138 ORTHO05D006318 2.3e-20 102.1 62 79.0
TWI74G0500 Tripterygium wilfordii HOM05D005138 ORTHO05D006318 2.3e-20 102.1 62 77.4
Nitab4.5_0000254g0180 Nicotiana tabacum HOM05D005138 ORTHO05D006318 3.0e-20 101.7 84 60.7
BcaB04g18689 Brassica carinata HOM05D005138 ORTHO05D006318 3.9e-20 101.3 62 80.6
BcaC09g48226 Brassica carinata HOM05D005138 ORTHO05D006318 3.9e-20 101.3 62 80.6
A03p37550 Brassica napus HOM05D005138 ORTHO05D006318 3.9e-20 101.3 62 80.6
C01p53060 Brassica napus HOM05D005138 ORTHO05D006318 3.9e-20 101.3 62 80.6
C03p45540 Brassica napus HOM05D005138 ORTHO05D006318 3.9e-20 101.3 62 80.6
BolC1t05249H Brassica oleracea HOM05D005138 ORTHO05D006318 3.9e-20 101.3 62 80.6
arahy.Tifrunner.gnm1.ann1.EVE7SV Arachis hypogaea HOM05D005138 ORTHO05D006318 5.1e-20 100.9 60 76.7
arahy.Tifrunner.gnm1.ann1.K7P4IE Arachis hypogaea HOM05D005138 ORTHO05D006318 5.1e-20 100.9 60 76.7
BolC5t34219H Brassica oleracea HOM05D005138 ORTHO05D006318 5.1e-20 100.9 63 79.4
Sp3g10480 Schrenkiella parvula HOM05D005138 ORTHO05D006318 5.1e-20 100.9 62 80.6
A05p37100 Brassica napus HOM05D005138 ORTHO05D006318 8.7e-20 100.1 61 80.3
BraA05t22507Z Brassica rapa HOM05D005138 ORTHO05D006318 8.7e-20 100.1 61 80.3
CANSAT56G0322 Cannabis sativa HOM05D005138 ORTHO05D006318 1.1e-19 99.8 62 77.4
CAN.G1362.7 Capsicum annuum HOM05D005138 ORTHO05D006318 1.1e-19 99.8 60 78.3
CARHR086810 Cardamine hirsuta HOM05D005138 ORTHO05D006318 1.1e-19 99.8 62 80.6
Sabra01G0021400 Salix brachista HOM05D005138 ORTHO05D006318 1.1e-19 99.8 62 72.6
THA.LOC104799320 Tarenaya hassleriana HOM05D005138 ORTHO05D006318 1.1e-19 99.8 62 79.0
Thhalv10021751m.g Eutrema salsugineum HOM05D005138 ORTHO05D006318 1.9e-19 99.0 62 79.0
Zm00001eb001400 Zea mays HOM05D005138 ORTHO05D006318 1.9e-19 99.0 62 74.2
Psat4g099920 Pisum sativum HOM05D005138 ORTHO05D006318 2.5e-19 98.6 69 66.7
Potri.001G029900 Populus trichocarpa HOM05D005138 ORTHO05D006318 2.5e-19 98.6 62 72.6
AL3G23920 Arabidopsis lyrata HOM05D005138 ORTHO05D006318 3.3e-19 98.2 62 77.4
AT3G12260 Arabidopsis thaliana HOM05D005138 ORTHO05D006318 3.3e-19 98.2 62 77.4
Carub.0003s1162 Capsella rubella HOM05D005138 ORTHO05D006318 3.3e-19 98.2 71 69.0
Medtr8g040150 Medicago truncatula HOM05D005138 ORTHO05D006318 3.3e-19 98.2 69 66.7
Solyc01g022750.3 Solanum lycopersicum HOM05D005138 ORTHO05D006318 4.3e-19 97.8 60 75.0
Sopen01g016660 Solanum pennellii HOM05D005138 ORTHO05D006318 4.3e-19 97.8 60 75.0
Aqoxy2G00421 Aquilegia oxysepala HOM05D005138 ORTHO05D006318 5.7e-19 97.4 60 78.3
VMungo1127G1184 Vigna mungo HOM05D005138 ORTHO05D006318 5.7e-19 97.4 62 72.6
Glyma.15G231900 Glycine max HOM05D005138 ORTHO05D006318 1.3e-18 96.3 62 74.2
TPR.G8538 Trifolium pratense HOM05D005138 ORTHO05D006318 1.3e-18 96.3 69 63.8
Migut.N01855 Erythranthe guttata HOM05D005138 ORTHO05D006318 2.2e-18 95.5 62 74.2
Glyma.09G091002 Glycine max HOM05D005138 ORTHO05D006318 2.2e-18 95.5 62 74.2
Lalb_Chr03g0032141 Lupinus albus HOM05D005138 ORTHO05D006318 2.2e-18 95.5 63 73.0
unitig_899.g15579 Utricularia gibba HOM05D005138 ORTHO05D006318 3.7e-18 94.7 62 75.8
PGSC0003DMG400005271 Solanum tuberosum HOM05D005138 ORTHO05D006318 4.8e-18 94.4 60 71.7
Phvul.011G203300 Phaseolus vulgaris HOM05D005138 ORTHO05D006318 6.3e-18 94.0 62 71.0
SalBow5G1163 Salvia bowleyana HOM05D005138 ORTHO05D006318 6.3e-18 94.0 67 67.2
Glyma.13G193600 Glycine max HOM05D005138 ORTHO05D006318 1.4e-17 92.8 62 72.6
Lalb_Chr19g0132981 Lupinus albus HOM05D005138 ORTHO05D006318 2.4e-17 92.0 80 61.2
Ca_23972_v3 Cicer arietinum L. HOM05D005138 ORTHO05D006318 5.3e-17 90.9 61 68.9
Lj3g0022103 Lotus japonicus HOM05D005138 ORTHO05D006318 2.6e-16 88.6 63 68.3
Aqoxy2G00420 Aquilegia oxysepala HOM05D000001 ORTHO05D007291 7.7e-16 87.0 58 74.1
MSTRG.5074 Avicennia marina HOM05D005138 ORTHO05D006318 2.7e-13 78.6 68 60.3
Mapoly0055s0110 Marchantia polymorpha HOM05D005138 ORTHO05D006318 3.6e-13 78.2 64 60.9
Pp3c2_3180 Physcomitrium patens HOM05D005138 ORTHO05D006318 4.6e-13 77.8 62 59.7
Pp3c1_37620 Physcomitrium patens HOM05D005138 ORTHO05D006318 1.0e-12 76.6 62 59.7
CBR_g52457 Chara braunii HOM05D005138 ORTHO05D006318 1.5e-11 72.8 67 58.2
ECA248G2587 Erigeron canadensis HOM05D005138 ORTHO05D006318 1.8e-09 65.9 33 93.9
Actinidia38920 Actinidia chinensis HOM05D005138 ORTHO05D006318 5.5e-06 54.3 60 55.0
BcaC08g45100 Brassica carinata HOM05D004238 ORTHO05D004934 5.5e-06 54.3 33 72.7


User provided reference genes

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