Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG00G003290 Citrullus lanatus HOM05D007398 ORTHO05D004912 3.4e-62 241.5 124 100.0
ClCG02G001930 Citrullus lanatus HOM05D007398 ORTHO05D004912 3.4e-62 241.5 124 100.0
MELO3C018817.2 Cucumis melo HOM05D007398 ORTHO05D004912 9.0e-55 216.9 124 92.7
CsaV3_7G003580 Cucumis sativus L. HOM05D007398 ORTHO05D004912 1.1e-52 209.9 124 88.7
Sed0017095 Sechium edule HOM05D007398 ORTHO05D004912 5.3e-39 164.5 124 72.6
Sed0010410 Sechium edule HOM05D007398 ORTHO05D004912 5.0e-37 157.9 128 70.3
Hma1.2p1_0328F.1_g126925 Hydrangea macrophylla HOM05D007398 ORTHO05D004912 2.9e-21 105.5 123 50.4
Hma1.2p1_0328F.1_g126930 Hydrangea macrophylla HOM05D007398 ORTHO05D004912 2.9e-21 105.5 123 50.4
ClCG02G008700 Citrullus lanatus HOM05D007398 ORTHO05D004912 8.5e-21 104.0 123 48.0
Cfa014400 Carpinus fangiana HOM05D007398 ORTHO05D004912 2.5e-20 102.4 132 49.2
Prupe.3G217200 Prunus persica HOM05D007398 ORTHO05D004912 4.2e-20 101.7 126 52.4
CiPaw.03G160000 Carya illinoinensis HOM05D007398 ORTHO05D004912 5.5e-20 101.3 130 50.0
Dinv39711 Davidia involucrata HOM05D007398 ORTHO05D004912 9.4e-20 100.5 120 50.0
TAR629G1636 Trochodendron aralioides HOM05D007398 ORTHO05D004912 2.1e-19 99.4 127 46.5
Haze_12865 Corylus avellana HOM05D007398 ORTHO05D004912 2.7e-19 99.0 133 49.6
RcHm_v2.0_Chr2g0159281 Rosa chinensis HOM05D007398 ORTHO05D004912 3.6e-19 98.6 125 52.0
FAN02G4350 Fragaria x ananassa HOM05D007398 ORTHO05D004912 8.0e-19 97.4 126 50.8
CSS0017183 Camellia sinensis var. sinensis HOM05D007398 ORTHO05D004912 1.0e-18 97.1 122 47.5
FvH4_6g43180 Fragaria vesca HOM05D007398 ORTHO05D004912 1.0e-18 97.1 126 49.2
Nn1g03511 Nelumbo nucifera HOM05D007398 ORTHO05D004912 1.0e-18 97.1 127 48.0
Sed0017131 Sechium edule HOM05D007398 ORTHO05D004912 3.0e-18 95.5 126 46.8
FAN14G0586 Fragaria x ananassa HOM05D007398 ORTHO05D004912 4.0e-18 95.1 126 50.0
TWI18G0787 Tripterygium wilfordii HOM05D007398 ORTHO05D004912 4.0e-18 95.1 122 45.1
MD09G1108900 Malus domestica HOM05D007398 ORTHO05D004912 5.2e-18 94.7 125 51.2
TAR627G0987 Trochodendron aralioides HOM05D007398 ORTHO05D004912 6.8e-18 94.4 126 46.8
Atru.chr6.3183 Acer truncatum HOM05D007398 ORTHO05D004912 8.8e-18 94.0 121 49.6
FAN10G4171 Fragaria x ananassa HOM05D007398 ORTHO05D004912 8.8e-18 94.0 126 48.4
Atru.chr6.3184 Acer truncatum HOM05D007398 ORTHO05D004912 1.2e-17 93.6 121 49.6
FAN05G1963 Fragaria x ananassa HOM05D007398 ORTHO05D004912 1.2e-17 93.6 127 49.6
TAR626G0532 Trochodendron aralioides HOM05D007398 ORTHO05D004912 1.5e-17 93.2 127 46.5
FAN09G1954 Fragaria x ananassa HOM05D007398 ORTHO05D004912 4.4e-17 91.7 126 50.0
CANSAT64G0797 Cannabis sativa HOM05D007398 ORTHO05D004912 5.7e-17 91.3 123 48.0
TWI75G1275 Tripterygium wilfordii HOM05D007398 ORTHO05D004912 5.7e-17 91.3 124 45.2
Ciclev10017196m.g Citrus clementina HOM05D007398 ORTHO05D004912 7.5e-17 90.9 123 47.2
Actinidia30523 Actinidia chinensis HOM05D007398 ORTHO05D004912 2.8e-16 89.0 120 49.2
MD17G1096900 Malus domestica HOM05D007398 ORTHO05D004912 3.7e-16 88.6 127 47.2
Sed0025347 Sechium edule HOM05D007398 ORTHO05D004912 4.8e-16 88.2 123 40.7
Lsat_1_v5_gn_7_92201 Lactuca sativa HOM05D007398 ORTHO05D004912 1.4e-15 86.7 133 42.9
Thecc.02G314700 Theobroma cacao HOM05D007398 ORTHO05D004912 1.4e-15 86.7 126 46.0
QL08p033081 Quercus lobata HOM05D007398 ORTHO05D004912 2.4e-15 85.9 136 46.3
Eucgr.K00797 Eucalyptus grandis HOM05D007398 ORTHO05D004912 7.0e-15 84.3 125 43.2
Duzib251G0280 Durio zibethinus HOM05D007398 ORTHO05D004912 1.2e-14 83.6 126 45.2
arahy.Tifrunner.gnm1.ann1.TIC55L Arachis hypogaea HOM05D007398 ORTHO05D004912 1.6e-14 83.2 118 45.8
Duzib248G0799 Durio zibethinus HOM05D007398 ORTHO05D004912 1.6e-14 83.2 126 44.4
Actinidia03605 Actinidia chinensis HOM05D007398 ORTHO05D004912 3.5e-14 82.0 107 47.7
Lalb_Chr19g0135871 Lupinus albus HOM05D007398 ORTHO05D004912 3.5e-14 82.0 124 41.9
Psat5g264000 Pisum sativum HOM05D007398 ORTHO05D004912 3.5e-14 82.0 90 48.9
Ca_01601_v3 Cicer arietinum L. HOM05D007398 ORTHO05D004912 4.5e-14 81.6 103 45.6
TPR.G4189 Trifolium pratense HOM05D007398 ORTHO05D004912 4.5e-14 81.6 108 44.4
Phvul.005G115200 Phaseolus vulgaris HOM05D007398 ORTHO05D004912 7.7e-14 80.9 113 46.0
Gohir.A12G157600 Gossypium hirsutum HOM05D007398 ORTHO05D004912 1.7e-13 79.7 126 45.2
arahy.Tifrunner.gnm1.ann1.X0QM4L Arachis hypogaea HOM05D007398 ORTHO05D004912 2.2e-13 79.3 118 44.1
Glyma.13G308800 Glycine max HOM05D007398 ORTHO05D004912 2.2e-13 79.3 123 43.1
COL.COLO4_27711 Corchorus olitorius HOM05D007398 ORTHO05D004912 3.8e-13 78.6 127 43.3
QL07p015665 Quercus lobata HOM05D007398 ORTHO05D004912 3.8e-13 78.6 131 46.6
Gorai.008G173500 Gossypium raimondii HOM05D007398 ORTHO05D004912 5.0e-13 78.2 126 43.7
VMungo1080G0246 Vigna mungo HOM05D007398 ORTHO05D004912 1.9e-12 76.3 117 46.2
Gohir.D12G159800 Gossypium hirsutum HOM05D007398 ORTHO05D004912 3.2e-12 75.5 126 42.9
Manes.13G070200 Manihot esculenta HOM05D007398 ORTHO05D004912 9.4e-12 73.9 101 48.5
Glyma.12G193700 Glycine max HOM05D007398 ORTHO05D004912 1.2e-11 73.6 125 46.4
Lalb_Chr24g0393181 Lupinus albus HOM05D007398 ORTHO05D004912 1.6e-11 73.2 96 45.8
MBI02_g21879_MAGBIO Magnolia biondii HOM05D007398 ORTHO05D004912 2.1e-11 72.8 116 39.7
Medtr2g088320 Medicago truncatula HOM05D007398 ORTHO05D004912 2.1e-11 72.8 90 42.2
Duzib213G1052 Durio zibethinus HOM05D007398 ORTHO05D004912 2.7e-11 72.4 92 46.7
Manes.15G071300 Manihot esculenta HOM05D007398 ORTHO05D004912 1.0e-10 70.5 108 38.9
Gohir.A04G144600 Gossypium hirsutum HOM05D007398 ORTHO05D004912 1.4e-10 70.1 117 42.7
Gohir.D01G067500 Gossypium hirsutum HOM05D007398 ORTHO05D004912 1.4e-10 70.1 92 47.8
Gorai.002G089400 Gossypium raimondii HOM05D007398 ORTHO05D004912 1.4e-10 70.1 92 47.8
Gohir.A01G080300 Gossypium hirsutum HOM05D007398 ORTHO05D004912 2.3e-10 69.3 92 46.7
Lsat_1_v5_gn_9_106500 Lactuca sativa HOM05D007398 ORTHO05D004912 2.3e-10 69.3 132 36.4
Thecc.07G035100 Theobroma cacao HOM05D007398 ORTHO05D004912 2.3e-10 69.3 92 44.6
Oeu041920.1 Olea europaea HOM05D007398 ORTHO05D004912 3.0e-10 68.9 117 44.4
ClCG03G014620 Citrullus lanatus HOM05D032147 ORTHO05D034646 4.0e-10 68.6 106 45.3
Cc05_g04620 Coffea canephora HOM05D007398 ORTHO05D004912 5.2e-10 68.2 117 39.3
Manes.03G130000 Manihot esculenta HOM05D007398 ORTHO05D004912 6.8e-10 67.8 101 41.6
Aqoxy1G02145 Aquilegia oxysepala HOM05D007398 ORTHO05D004912 8.8e-10 67.4 125 41.6
HanXRQChr03g0069481 Helianthus annuus HOM05D007398 ORTHO05D004912 8.8e-10 67.4 126 38.1
Gohir.D04G189100 Gossypium hirsutum HOM05D007398 ORTHO05D004912 1.2e-09 67.0 117 41.0
Gorai.012G184400 Gossypium raimondii HOM05D007398 ORTHO05D004912 1.5e-09 66.6 119 40.3
Rhsim06G0162600 Rhododendron simsii HOM05D007398 ORTHO05D004912 1.5e-09 66.6 126 38.1
A03p14360 Brassica napus HOM05D009587 ORTHO05D004912 2.6e-09 65.9 126 38.1
THA.LOC104813425 Tarenaya hassleriana HOM05D009587 ORTHO05D004912 3.4e-09 65.5 98 42.9
THA.LOC104817668 Tarenaya hassleriana HOM05D009587 ORTHO05D004912 3.4e-09 65.5 108 37.0
PSO541G0095 Papaver somniferum HOM05D007398 ORTHO05D004912 4.4e-09 65.1 114 34.2
AL8G30440 Arabidopsis lyrata HOM05D009587 ORTHO05D004912 5.7e-09 64.7 98 39.8
C03p16740 Brassica napus HOM05D009587 ORTHO05D004912 5.7e-09 64.7 122 38.5
Thhalv10015018m.g Eutrema salsugineum HOM05D009587 ORTHO05D004912 5.7e-09 64.7 118 39.0
Cpa.g.sc12.298 Carica papaya HOM05D007398 ORTHO05D004912 9.8e-09 63.9 101 35.6
BolC3t14094H Brassica oleracea HOM05D009587 ORTHO05D004912 1.7e-08 63.2 122 36.9
BraA03t10733Z Brassica rapa HOM05D009587 ORTHO05D004912 1.7e-08 63.2 123 38.2
Carub.0007s1391 Capsella rubella HOM05D009587 ORTHO05D004912 2.2e-08 62.8 117 38.5
AT5G54970 Arabidopsis thaliana HOM05D009587 ORTHO05D004912 3.7e-08 62.0 94 39.4
CARHR268310 Cardamine hirsuta HOM05D009587 ORTHO05D004912 1.4e-07 60.1 93 43.0
Lj4g0016348 Lotus japonicus HOM05D007398 ORTHO05D004912 1.4e-07 60.1 108 32.4
ECA236G3422 Erigeron canadensis HOM05D007398 ORTHO05D004912 1.8e-07 59.7 129 34.9
CARHR234560 Cardamine hirsuta HOM05D009587 ORTHO05D004912 2.4e-07 59.3 117 35.9
BcaC01g06332 Brassica carinata HOM05D009587 ORTHO05D004912 3.1e-07 58.9 123 35.8
Carub.0008s1526 Capsella rubella HOM05D009587 ORTHO05D004912 3.1e-07 58.9 97 39.2
Aa31LG3G10880 Aethionema arabicum HOM05D009587 ORTHO05D004912 4.1e-07 58.5 119 30.3
PGR083G1220 Punica granatum HOM05D007398 ORTHO05D004912 4.1e-07 58.5 92 37.0
BcaB01g04338 Brassica carinata HOM05D009587 ORTHO05D004912 5.4e-07 58.2 119 37.8
QL05p073115 Quercus lobata HOM05D007398 ORTHO05D004912 5.4e-07 58.2 98 41.8
QL05p073125 Quercus lobata HOM05D007398 ORTHO05D004912 5.4e-07 58.2 106 38.7
AL7G25880 Arabidopsis lyrata HOM05D009587 ORTHO05D004912 7.0e-07 57.8 94 39.4
Sp6g16920 Schrenkiella parvula HOM05D009587 ORTHO05D004912 1.2e-06 57.0 124 35.5
SalBow8G3401 Salvia bowleyana HOM05D011575 ORTHO05D004912 1.6e-06 56.6 87 43.7
HanXRQChr16g0504931 Helianthus annuus HOM05D007398 ORTHO05D004912 2.0e-06 56.2 103 39.8
BcaC07g38259 Brassica carinata HOM05D009587 ORTHO05D004912 3.5e-06 55.5 101 37.6
C08p10050 Brassica napus HOM05D009587 ORTHO05D004912 4.5e-06 55.1 101 37.6
BolC8t48684H Brassica oleracea HOM05D009587 ORTHO05D004912 4.5e-06 55.1 101 37.6
CDE01G0169 Ceratophyllum demersum HOM05D001264 ORTHO05D001167 4.5e-06 55.1 124 34.7
ECA240G1365 Erigeron canadensis HOM05D007398 ORTHO05D004912 5.9e-06 54.7 100 41.0


User provided reference genes

Program Settings