Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG00G000300 Citrullus lanatus HOM05D004274 ORTHO05D004980 7.8e-42 173.3 84 100.0
ClCG00G001760 Citrullus lanatus HOM05D004274 ORTHO05D004980 7.8e-42 173.3 84 100.0
ClCG10G003560 Citrullus lanatus HOM05D004274 ORTHO05D004980 3.8e-41 171.0 84 97.6
Nn4g26698 Nelumbo nucifera HOM05D004274 ORTHO05D004980 1.6e-23 112.5 84 66.7
PGR083G2809 Punica granatum HOM05D004274 ORTHO05D004980 1.1e-22 109.8 84 65.5
Gohir.D10G148100 Gossypium hirsutum HOM05D004274 ORTHO05D004980 4.0e-22 107.8 85 63.5
Hma1.2p1_0161F.1_g071960 Hydrangea macrophylla HOM05D004274 ORTHO05D004980 5.2e-22 107.5 83 65.1
Ciclev10006524m.g Citrus clementina HOM05D004274 ORTHO05D004980 1.2e-21 106.3 79 65.8
Glyma.18G049100 Glycine max HOM05D004274 ORTHO05D004980 1.2e-21 106.3 84 63.1
Lsat_1_v5_gn_9_15480 Lactuca sativa HOM05D004274 ORTHO05D004980 1.2e-21 106.3 84 61.9
Gohir.A10G118575 Gossypium hirsutum HOM05D004274 ORTHO05D004980 1.5e-21 105.9 83 65.1
Medtr3g062940 Medicago truncatula HOM05D004274 ORTHO05D004980 1.5e-21 105.9 88 62.5
PSO384G1823 Papaver somniferum HOM05D004274 ORTHO05D004980 1.5e-21 105.9 88 62.5
PSO339G1940 Papaver somniferum HOM05D004274 ORTHO05D004980 2.0e-21 105.5 88 62.5
ECA247G3741 Erigeron canadensis HOM05D004274 ORTHO05D004980 5.8e-21 104.0 81 61.7
Lalb_Chr15g0085561 Lupinus albus HOM05D004274 ORTHO05D004980 1.3e-20 102.8 89 59.6
Nitab4.5_0002399g0100 Nicotiana tabacum HOM05D004274 ORTHO05D004980 1.7e-20 102.4 85 60.0
THA.LOC104823773 Tarenaya hassleriana HOM05D004274 ORTHO05D004980 1.7e-20 102.4 86 59.3
Duzib168G2323 Durio zibethinus HOM05D004274 ORTHO05D004980 2.2e-20 102.1 85 62.4
TPR.G13822 Trifolium pratense HOM05D004274 ORTHO05D004980 2.2e-20 102.1 100 54.0
Lj6g0024729 Lotus japonicus HOM05D004274 ORTHO05D004980 2.9e-20 101.7 80 62.5
Nitab4.5_0000539g0100 Nicotiana tabacum HOM05D004274 ORTHO05D004980 2.9e-20 101.7 85 58.8
AUR62017620 Chenopodium quinoa HOM05D004274 ORTHO05D004980 3.7e-20 101.3 95 56.8
Psat5g146360 Pisum sativum HOM05D004274 ORTHO05D004980 3.7e-20 101.3 102 52.0
Sc04g0008110 Simmondsia chinensis HOM05D004274 ORTHO05D004980 3.7e-20 101.3 84 59.5
Haze_24498 Corylus avellana HOM05D004274 ORTHO05D004980 6.4e-20 100.5 81 61.7
Manes.02G210080 Manihot esculenta HOM05D004274 ORTHO05D004980 6.4e-20 100.5 85 58.8
Thecc.09G366500 Theobroma cacao HOM05D004274 ORTHO05D004980 6.4e-20 100.5 85 61.2
AT5G58240 Arabidopsis thaliana HOM05D004274 ORTHO05D004980 8.3e-20 100.1 88 59.1
Peaxi162Scf00293g00719 Petunia axillaris HOM05D004274 ORTHO05D004980 8.3e-20 100.1 81 61.7
Sed0025842 Sechium edule HOM05D004274 ORTHO05D004980 8.3e-20 100.1 55 85.5
CSS0034718 Camellia sinensis var. sinensis HOM05D004274 ORTHO05D004980 1.1e-19 99.8 81 61.7
Ca_15091_v3 Cicer arietinum L. HOM05D004274 ORTHO05D004980 1.9e-19 99.0 92 56.5
PSO339G1462 Papaver somniferum HOM05D004274 ORTHO05D004980 1.9e-19 99.0 87 56.3
AUR62015168 Chenopodium quinoa HOM05D004274 ORTHO05D004980 2.4e-19 98.6 98 54.1
Gorai.011G165300 Gossypium raimondii HOM05D004274 ORTHO05D004980 2.4e-19 98.6 81 61.7
PGSC0003DMG400015127 Solanum tuberosum HOM05D004274 ORTHO05D004980 2.4e-19 98.6 81 58.0
VMungo0540G0713 Vigna mungo HOM05D004274 ORTHO05D004980 2.4e-19 98.6 109 50.5
CANSAT54G0105 Cannabis sativa HOM05D004274 ORTHO05D004980 3.2e-19 98.2 81 60.5
Carub.0008s1878 Capsella rubella HOM05D004274 ORTHO05D004980 4.1e-19 97.8 86 60.5
BcaB01g04543 Brassica carinata HOM05D004274 ORTHO05D004980 5.4e-19 97.4 88 55.7
FAN16G2313 Fragaria x ananassa HOM05D004274 ORTHO05D004980 5.4e-19 97.4 97 52.6
FAN21G2911 Fragaria x ananassa HOM05D004274 ORTHO05D004980 5.4e-19 97.4 87 56.3
arahy.Tifrunner.gnm1.ann1.P847CR Arachis hypogaea HOM05D004274 ORTHO05D004980 7.1e-19 97.1 103 51.5
Thhalv10014808m.g Eutrema salsugineum HOM05D004274 ORTHO05D004980 7.1e-19 97.1 86 57.0
Os11g0120600 Oryza sativa ssp. japonica HOM05D004274 ORTHO05D004980 7.1e-19 97.1 81 59.3
arahy.Tifrunner.gnm1.ann1.URW4K1 Arachis hypogaea HOM05D004274 ORTHO05D004980 1.2e-18 96.3 101 52.5
Lj2C1107G8 Lonicera japonica HOM05D004274 ORTHO05D004980 1.2e-18 96.3 95 53.7
Sp6g19900 Schrenkiella parvula HOM05D004274 ORTHO05D004980 2.1e-18 95.5 81 59.3
BcaC04g19900 Brassica carinata HOM05D004274 ORTHO05D004980 2.7e-18 95.1 86 55.8
C09p50090 Brassica napus HOM05D004274 ORTHO05D004980 2.7e-18 95.1 86 55.8
BolC9t57861H Brassica oleracea HOM05D004274 ORTHO05D004980 2.7e-18 95.1 86 55.8
BraA10t43627Z Brassica rapa HOM05D004274 ORTHO05D004980 2.7e-18 95.1 86 55.8
HanXRQChr13g0391791 Helianthus annuus HOM05D004274 ORTHO05D004980 3.5e-18 94.7 92 53.3
Rhsim01G0245500 Rhododendron simsii HOM05D004274 ORTHO05D004980 3.5e-18 94.7 106 50.0
GSVIVG01024520001 Vitis vinifera HOM05D004274 ORTHO05D004980 3.5e-18 94.7 105 47.6
CANSAT54G0115 Cannabis sativa HOM05D004274 ORTHO05D004980 4.6e-18 94.4 89 57.3
Eucgr.D01050 Eucalyptus grandis HOM05D004274 ORTHO05D004980 4.6e-18 94.4 80 60.0
SEGI_00344 Sequoiadendron giganteum HOM05D004274 ORTHO05D004980 4.6e-18 94.4 87 57.5
Ah.01g002020 Amaranthus hybridus HOM05D004274 ORTHO05D004980 6.0e-18 94.0 84 56.0
AL8G34340 Arabidopsis lyrata HOM05D004274 ORTHO05D004980 7.8e-18 93.6 95 53.7
A10p15980 Brassica napus HOM05D004274 ORTHO05D004980 1.3e-17 92.8 81 56.8
FAN11G1599 Fragaria x ananassa HOM05D004274 ORTHO05D004980 1.3e-17 92.8 84 54.8
MBI03_g31633_MAGBIO Magnolia biondii HOM05D004274 ORTHO05D004980 1.7e-17 92.4 80 57.5
Oeu023904.1 Olea europaea HOM05D004274 ORTHO05D004980 1.7e-17 92.4 104 47.1
Migut.N00703 Erythranthe guttata HOM05D004274 ORTHO05D004980 2.3e-17 92.0 94 52.1
Os11g0120725 Oryza sativa ssp. japonica HOM05D004274 ORTHO05D004980 2.3e-17 92.0 81 55.6
Sed0009740 Sechium edule HOM05D004274 ORTHO05D004980 5.1e-17 90.9 81 55.6
Cc01_g15600 Coffea canephora HOM05D004274 ORTHO05D004980 6.6e-17 90.5 107 47.7
RcHm_v2.0_Chr5g0074041 Rosa chinensis HOM05D004274 ORTHO05D004980 1.1e-16 89.7 79 55.7
Oeu020453.2 Olea europaea HOM05D004274 ORTHO05D004980 1.5e-16 89.4 101 48.5
FvH4_3g41190 Fragaria vesca HOM05D004274 ORTHO05D004980 1.9e-16 89.0 100 49.0
Aa31LG11G30 Aethionema arabicum HOM05D004274 ORTHO05D004980 3.3e-16 88.2 106 46.2
CiPaw.13G059500 Carya illinoinensis HOM05D004274 ORTHO05D004980 7.3e-16 87.0 122 44.3
Medtr3g062950 Medicago truncatula HOM05D004274 ORTHO05D004980 9.5e-16 86.7 94 48.9
Sed0016747 Sechium edule HOM05D004274 ORTHO05D004980 9.5e-16 86.7 114 43.9
Aqoxy2G00658 Aquilegia oxysepala HOM05D004274 ORTHO05D004980 1.6e-15 85.9 84 57.1
Glyma.18G049000 Glycine max HOM05D004274 ORTHO05D004980 1.6e-15 85.9 84 52.4
Cpa.g.sc84.38 Carica papaya HOM05D004274 ORTHO05D004980 2.1e-15 85.5 77 57.1
MD11G1049100 Malus domestica HOM05D004274 ORTHO05D004980 2.1e-15 85.5 93 48.4
Glyma.11G201800 Glycine max HOM05D004274 ORTHO05D004980 2.8e-15 85.1 79 54.4
arahy.Tifrunner.gnm1.ann1.VY09I5 Arachis hypogaea HOM05D004274 ORTHO05D004980 3.6e-15 84.7 100 45.0
CBR_g3497 Chara braunii HOM05D005342 ORTHO05D006925 3.6e-15 84.7 81 54.3
Lj6g0019258 Lotus japonicus HOM05D004274 ORTHO05D004980 3.6e-15 84.7 79 54.4
Psat5g146320 Pisum sativum HOM05D004274 ORTHO05D004980 4.7e-15 84.3 89 49.4
CBR_g39157 Chara braunii HOM05D004274 ORTHO05D004980 8.1e-15 83.6 81 55.6
Medtr3g063030 Medicago truncatula HOM05D004274 ORTHO05D004980 8.1e-15 83.6 87 50.6
SGA_v2.0_scaffold8G04481 Striga asiatica HOM05D004274 ORTHO05D004980 3.1e-14 81.6 81 53.1
TPR.G37420 Trifolium pratense HOM05D004274 ORTHO05D004980 3.1e-14 81.6 100 45.0
AagrBONN_evm.TU.Sc2ySwM_228.3513 Anthoceros agrestis HOM05D004274 ORTHO05D004980 1.5e-13 79.3 87 47.1
Cre17.g698266 Chlamydomonas reinhardtii HOM05D004274 ORTHO05D004980 2.6e-13 78.6 85 51.8
Zm00001eb265500 Zea mays HOM05D004274 ORTHO05D004980 5.8e-13 77.4 77 51.9
SMO351G0049 Selaginella moellendorffii HOM05D004274 ORTHO05D004980 1.3e-12 76.3 86 46.5
Ciclev10006852m.g Citrus clementina HOM05D004274 ORTHO05D004980 1.7e-12 75.9 132 35.6
Phvul.006G082500 Phaseolus vulgaris HOM05D004274 ORTHO05D004980 1.7e-12 75.9 79 49.4
Pp3c4_3210 Physcomitrium patens HOM05D004274 ORTHO05D004980 1.7e-12 75.9 89 48.3
Lsat_1_v5_gn_8_98760 Lactuca sativa HOM05D004274 ORTHO05D004980 3.8e-12 74.7 77 51.9
Actinidia23822 Actinidia chinensis HOM05D004274 ORTHO05D004980 4.9e-12 74.3 80 52.5
SalBow2G3254 Salvia bowleyana HOM05D004274 ORTHO05D004980 4.9e-12 74.3 80 50.0
CsaV3_3G000810 Cucumis sativus L. HOM05D004274 ORTHO05D004980 6.4e-12 73.9 134 35.1
PRCOL_00000589 Prasinoderma coloniale HOM05D004274 ORTHO05D004980 8.4e-12 73.6 79 46.8
SMO163G0095 Selaginella moellendorffii HOM05D004274 ORTHO05D004980 3.2e-11 71.6 102 40.2
MELO3C013768.2 Cucumis melo HOM05D004274 ORTHO05D004980 9.2e-11 70.1 143 32.9
MELO3C014026.2 Cucumis melo HOM05D004274 ORTHO05D004980 9.2e-11 70.1 40 80.0
CiPaw.14G047000 Carya illinoinensis HOM05D004274 ORTHO05D004980 1.6e-10 69.3 81 46.9
Atru.chr1.1109 Acer truncatum HOM05D004274 ORTHO05D004980 6.0e-10 67.4 46 69.6
EL10Ac9g22874 Beta vulgaris HOM05D004274 ORTHO05D004980 3.0e-09 65.1 46 65.2
FvH4_3g41230 Fragaria vesca HOM05D004274 ORTHO05D004980 3.9e-09 64.7 82 45.1
EL10Ac9g22872 Beta vulgaris HOM05D007938 ORTHO05D009929 5.1e-09 64.3 74 45.9
Prupe.6G037600 Prunus persica HOM05D004274 ORTHO05D004980 5.1e-09 64.3 79 44.3
TWI32G0546 Tripterygium wilfordii HOM05D004274 ORTHO05D004980 5.1e-09 64.3 80 43.8
MCO06G292 Micromonas commoda HOM05D004274 ORTHO05D004980 6.6e-09 63.9 87 41.4
CDE08G1523 Ceratophyllum demersum HOM05D004274 ORTHO05D004980 1.5e-08 62.8 42 69.0
Dinv28765 Davidia involucrata HOM05D004274 ORTHO05D004980 1.9e-08 62.4 34 79.4
Actinidia34514 Actinidia chinensis HOM05D004274 ORTHO05D004980 3.3e-08 61.6 34 79.4
COL.COLO4_34964 Corchorus olitorius HOM05D004274 ORTHO05D004980 4.3e-08 61.2 43 69.8
Atru.chr1.1108 Acer truncatum HOM05D004274 ORTHO05D004980 7.3e-08 60.5 42 66.7
MD03G1046300 Malus domestica HOM05D004274 ORTHO05D004980 7.3e-08 60.5 42 66.7
CSS0035716 Camellia sinensis var. sinensis HOM05D004274 ORTHO05D004980 1.2e-07 59.7 85 43.5
RcHm_v2.0_Chr5g0074031 Rosa chinensis HOM05D004274 ORTHO05D004980 1.2e-07 59.7 42 64.3
Solyc09g018630.3 Solanum lycopersicum HOM05D004274 ORTHO05D004980 1.2e-07 59.7 46 60.9
CARHR272040 Cardamine hirsuta HOM05D004274 ORTHO05D004980 2.1e-07 58.9 46 63.0
ATR0743G223 Amborella trichopoda HOM05D004274 ORTHO05D004980 2.8e-07 58.5 43 65.1
Potri.013G161100 Populus trichocarpa HOM05D004274 ORTHO05D004980 2.8e-07 58.5 46 58.7
CAN.G3.27 Capsicum annuum HOM05D004274 ORTHO05D004980 4.7e-07 57.8 46 56.5
Sc14g0008130 Simmondsia chinensis HOM05D004274 ORTHO05D004980 8.1e-07 57.0 43 60.5
Eucgr.D01049 Eucalyptus grandis HOM05D004274 ORTHO05D004980 1.1e-06 56.6 42 61.9
Hund24406 Selenicereus undatus HOM05D004274 ORTHO05D004980 1.1e-06 56.6 43 60.5
HPP92_015444 Vanilla planifolia HOM05D004274 ORTHO05D004980 1.1e-06 56.6 43 60.5
unitig_26.g10228 Utricularia gibba HOM05D004274 ORTHO05D004980 1.4e-06 56.2 46 60.9
vmacro14660 Vaccinium macrocarpon HOM05D004274 ORTHO05D004980 1.4e-06 56.2 41 63.4
Dinv28766 Davidia involucrata HOM05D004274 ORTHO05D004980 2.4e-06 55.5 40 65.0
arahy.Tifrunner.gnm1.ann1.8HSJ02 Arachis hypogaea HOM05D002696 ORTHO05D011600 4.0e-06 54.7 64 46.9
CDE08G1045 Ceratophyllum demersum HOM05D004274 ORTHO05D004980 4.0e-06 54.7 38 68.4
Lalb_Chr15g0085541 Lupinus albus HOM05D004274 ORTHO05D004980 6.9e-06 53.9 46 52.2
TAR633G0792 Trochodendron aralioides HOM05D004274 ORTHO05D004980 6.9e-06 53.9 42 64.3
arahy.Tifrunner.gnm1.ann1.1VUI6H Arachis hypogaea HOM05D004274 ORTHO05D004980 9.0e-06 53.5 64 43.8
Ciclev10005970m.g Citrus clementina HOM05D004274 ORTHO05D004980 9.0e-06 53.5 82 39.0
FAN12G2850 Fragaria x ananassa HOM05D004274 ORTHO05D004980 9.0e-06 53.5 43 58.1
Sabra19G0129400 Salix brachista HOM05D004274 ORTHO05D004980 9.0e-06 53.5 42 59.5


User provided reference genes

Program Settings