Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG00G001450 Citrullus lanatus HOM05D006470 ORTHO05D007978 8.8e-120 433.7 231 100.0
ClCG07G001200 Citrullus lanatus HOM05D006470 ORTHO05D007978 8.2e-110 400.6 201 100.0
MELO3C012860.2 Cucumis melo HOM05D006470 ORTHO05D007978 1.3e-99 366.7 203 88.2
CsaV3_3G022070 Cucumis sativus L. HOM05D006470 ORTHO05D007978 2.4e-93 345.9 201 85.6
Sed0015172 Sechium edule HOM05D006470 ORTHO05D007978 7.8e-76 287.7 199 74.4
Sed0003902 Sechium edule HOM05D006470 ORTHO05D007978 5.6e-74 281.6 193 74.6
Haze_24664 Corylus avellana HOM05D006470 ORTHO05D007978 1.4e-61 240.4 221 57.5
Cfa002452 Carpinus fangiana HOM05D006470 ORTHO05D007978 1.6e-60 236.9 221 56.6
QL09p040137 Quercus lobata HOM05D006470 ORTHO05D007978 1.7e-59 233.4 214 51.9
MD10G1180100 Malus domestica HOM05D006470 ORTHO05D007978 1.6e-57 226.9 231 51.5
TWI12G0101 Tripterygium wilfordii HOM05D006470 ORTHO05D007978 3.2e-53 212.6 187 57.8
Prupe.8G220100 Prunus persica HOM05D006470 ORTHO05D007978 2.7e-52 209.5 186 57.5
FAN27G1109 Fragaria x ananassa HOM05D006470 ORTHO05D007978 3.5e-52 209.1 200 54.0
Ciclev10020031m.g Citrus clementina HOM05D006470 ORTHO05D007978 4.6e-52 208.8 189 56.6
FvH4_2g21070 Fragaria vesca HOM05D006470 ORTHO05D007978 6.0e-52 208.4 198 54.0
FAN24G3268 Fragaria x ananassa HOM05D006470 ORTHO05D007978 7.8e-52 208.0 197 54.3
COL.COLO4_04011 Corchorus olitorius HOM05D006470 ORTHO05D007978 1.3e-51 207.2 196 54.1
Thecc.01G254400 Theobroma cacao HOM05D006470 ORTHO05D007978 1.3e-51 207.2 195 53.8
Gohir.A07G150300 Gossypium hirsutum HOM05D006470 ORTHO05D007978 1.7e-51 206.8 216 51.4
Thhalv10027034m.g Eutrema salsugineum HOM05D006470 ORTHO05D007978 3.9e-51 205.7 238 49.6
Duzib138G0951 Durio zibethinus HOM05D006470 ORTHO05D007978 6.6e-51 204.9 188 55.3
Gohir.D07G156600 Gossypium hirsutum HOM05D006470 ORTHO05D007978 8.6e-51 204.5 216 50.5
Gorai.001G179700 Gossypium raimondii HOM05D006470 ORTHO05D007978 8.6e-51 204.5 216 50.5
Potri.005G227600 Populus trichocarpa HOM05D006470 ORTHO05D007978 3.3e-50 202.6 191 54.5
Duzib133G1499 Durio zibethinus HOM05D006470 ORTHO05D007978 9.5e-50 201.1 193 52.8
FAN15G1173 Fragaria x ananassa HOM05D006470 ORTHO05D007978 9.5e-50 201.1 189 54.5
Manes.13G036500 Manihot esculenta HOM05D006470 ORTHO05D007978 1.2e-49 200.7 181 54.7
Sabra05G0175600 Salix brachista HOM05D006470 ORTHO05D007978 1.2e-49 200.7 182 54.9
FAN20G2495 Fragaria x ananassa HOM05D006470 ORTHO05D007978 8.1e-49 198.0 189 54.5
Manes.12G034500 Manihot esculenta HOM05D006470 ORTHO05D007978 1.4e-48 197.2 184 52.7
Hma1.2p1_0576F.1_g181850 Hydrangea macrophylla HOM05D006470 ORTHO05D007978 5.2e-48 195.3 235 47.2
BcaNung04289 Brassica carinata HOM05D006470 ORTHO05D007978 1.5e-47 193.7 232 48.3
BcaNung04688 Brassica carinata HOM05D006470 ORTHO05D007978 1.5e-47 193.7 232 48.3
Cpa.g.sc165.30 Carica papaya HOM05D006470 ORTHO05D007978 1.5e-47 193.7 168 54.2
RcHm_v2.0_Chr6g0287531 Rosa chinensis HOM05D006470 ORTHO05D007978 1.5e-47 193.7 196 51.5
Dinv22382 Davidia involucrata HOM05D006470 ORTHO05D007978 2.6e-47 193.0 200 53.5
DCAR_012563 Daucus carota HOM05D006470 ORTHO05D007978 7.6e-47 191.4 225 47.6
TWI18G0736 Tripterygium wilfordii HOM05D006470 ORTHO05D007978 2.9e-46 189.5 176 55.7
BraA01t00881Z Brassica rapa HOM05D006470 ORTHO05D007978 8.4e-46 188.0 206 47.6
CiPaw.03G267400 Carya illinoinensis HOM05D006470 ORTHO05D007978 1.1e-45 187.6 184 52.2
SGA_v2.0_scaffold1G00631 Striga asiatica HOM05D006470 ORTHO05D007978 4.2e-45 185.7 237 45.6
A01p09340 Brassica napus HOM05D006470 ORTHO05D007978 5.4e-45 185.3 206 47.1
BcaNung04689 Brassica carinata HOM05D006470 ORTHO05D007978 1.6e-44 183.7 204 50.0
C01p10920 Brassica napus HOM05D006470 ORTHO05D007978 2.7e-44 183.0 200 47.0
Sp7g26550 Schrenkiella parvula HOM05D006470 ORTHO05D007978 3.5e-44 182.6 215 48.8
Aa31LG2G21810 Aethionema arabicum HOM05D006470 ORTHO05D007978 7.8e-44 181.4 187 50.8
SHI26693 Sapria himalayana HOM05D006470 ORTHO05D007978 1.7e-43 180.3 230 46.5
BcaC09g51655 Brassica carinata HOM05D006470 ORTHO05D007978 1.1e-42 177.6 200 46.0
BolC1t01056H Brassica oleracea HOM05D006470 ORTHO05D007978 1.1e-42 177.6 200 46.0
Carub.0007s1211 Capsella rubella HOM05D006470 ORTHO05D007978 1.1e-42 177.6 164 53.7
Rhsim13G0037300 Rhododendron simsii HOM05D006470 ORTHO05D007978 9.6e-42 174.5 180 51.1
Lalb_Chr25g0289891 Lupinus albus HOM05D006470 ORTHO05D007978 1.2e-41 174.1 184 46.7
AL7G23980 Arabidopsis lyrata HOM05D006470 ORTHO05D007978 1.6e-41 173.7 161 54.0
Migut.D00451 Erythranthe guttata HOM05D006470 ORTHO05D007978 1.6e-41 173.7 220 44.5
AT4G28560 Arabidopsis thaliana HOM05D006470 ORTHO05D007978 2.1e-41 173.3 190 50.0
Lsat_1_v5_gn_9_10681 Lactuca sativa HOM05D006470 ORTHO05D007978 1.4e-40 170.6 186 52.2
Medtr1g069695 Medicago truncatula HOM05D006470 ORTHO05D007978 1.4e-40 170.6 198 44.4
AUR62025485 Chenopodium quinoa HOM05D006470 ORTHO05D007978 1.8e-40 170.2 208 45.2
HanXRQChr10g0280761 Helianthus annuus HOM05D006470 ORTHO05D007978 2.4e-40 169.9 190 48.9
THA.LOC104814525 Tarenaya hassleriana HOM05D006470 ORTHO05D007978 2.4e-40 169.9 154 54.5
Lj5g0015356 Lotus japonicus HOM05D006470 ORTHO05D007978 4.0e-40 169.1 195 45.6
arahy.Tifrunner.gnm1.ann1.NTND9X Arachis hypogaea HOM05D006470 ORTHO05D007978 9.0e-40 167.9 189 45.0
CARHR236350 Cardamine hirsuta HOM05D006470 ORTHO05D007978 9.0e-40 167.9 187 46.0
Glyma.10G038800 Glycine max HOM05D006470 ORTHO05D007978 1.5e-39 167.2 203 43.3
vmacro02686 Vaccinium macrocarpon HOM05D006470 ORTHO05D007978 1.5e-39 167.2 180 48.3
Sc05g0003180 Simmondsia chinensis HOM05D006470 ORTHO05D007978 4.4e-39 165.6 207 46.4
Phvul.007G191000 Phaseolus vulgaris HOM05D006470 ORTHO05D007978 7.6e-39 164.9 201 45.3
Nitab4.5_0003295g0060 Nicotiana tabacum HOM05D006470 ORTHO05D007978 1.3e-38 164.1 180 47.2
CSS0011402 Camellia sinensis var. sinensis HOM05D006470 ORTHO05D007978 1.7e-38 163.7 184 46.2
CSS0034739 Camellia sinensis var. sinensis HOM05D006470 ORTHO05D007978 1.7e-38 163.7 184 46.2
Lj2P1147T22 Lonicera japonica HOM05D006470 ORTHO05D007978 1.7e-38 163.7 182 47.3
Nitab4.5_0001945g0030 Nicotiana tabacum HOM05D006470 ORTHO05D007978 2.2e-38 163.3 163 49.1
Actinidia37529 Actinidia chinensis HOM05D006470 ORTHO05D007978 2.9e-38 162.9 164 51.8
SalBow4G0507 Salvia bowleyana HOM05D006470 ORTHO05D007978 3.8e-38 162.5 210 41.9
VMungo0720G2572 Vigna mungo HOM05D006470 ORTHO05D007978 1.4e-37 160.6 189 47.1
Lsat_1_v5_gn_5_182700 Lactuca sativa HOM05D006470 ORTHO05D007978 1.9e-37 160.2 165 52.1
PSO210G2696 Papaver somniferum HOM05D006470 ORTHO05D007978 3.2e-37 159.5 188 45.7
Cc01_g18070 Coffea canephora HOM05D006470 ORTHO05D007978 5.4e-37 158.7 187 49.7
Aqoxy5G00193 Aquilegia oxysepala HOM05D006470 ORTHO05D007978 1.6e-36 157.1 206 41.3
Ca_09663_v3 Cicer arietinum L. HOM05D006470 ORTHO05D007978 1.6e-36 157.1 183 43.2
Psat6g062280 Pisum sativum HOM05D006470 ORTHO05D007978 7.8e-36 154.8 199 39.7
TAR362G1291 Trochodendron aralioides HOM05D006470 ORTHO05D007978 1.0e-35 154.5 182 47.8
CDE08G1533 Ceratophyllum demersum HOM05D006470 ORTHO05D007978 3.0e-35 152.9 202 45.0
ECA248G1135 Erigeron canadensis HOM05D006470 ORTHO05D007978 3.0e-35 152.9 176 48.3
PSO832G0066 Papaver somniferum HOM05D006470 ORTHO05D007978 5.1e-35 152.1 182 46.2
PGSC0003DMG400010325 Solanum tuberosum HOM05D006470 ORTHO05D007978 1.1e-34 151.0 151 49.0
Solyc09g072630.3 Solanum lycopersicum HOM05D006470 ORTHO05D007978 2.5e-34 149.8 175 45.1
Sopen09g028440 Solanum pennellii HOM05D006470 ORTHO05D007978 2.5e-34 149.8 178 43.8
Peaxi162Scf00415g00003 Petunia axillaris HOM05D006470 ORTHO05D007978 1.3e-33 147.5 154 49.4
Psat6g062240 Pisum sativum HOM05D006470 ORTHO05D007978 1.6e-33 147.1 189 40.7
CAN.G1251.2 Capsicum annuum HOM05D006470 ORTHO05D007978 9.0e-32 141.4 153 47.1
CAN.G1868.1 Capsicum annuum HOM05D006470 ORTHO05D007978 9.0e-32 141.4 153 47.1
MBI10_g13794_MAGBIO Magnolia biondii HOM05D006470 ORTHO05D007978 1.5e-31 140.6 180 46.7
Oeu052037.1 Olea europaea HOM05D006470 ORTHO05D007978 4.5e-31 139.0 183 42.1
Glyma.13G125201 Glycine max HOM05D006470 ORTHO05D007978 5.4e-29 132.1 165 45.5
Psat6g063200 Pisum sativum HOM05D006470 ORTHO05D007978 5.4e-29 132.1 191 38.7
Atru.BG.79.p Acer truncatum HOM05D006470 ORTHO05D007978 3.0e-27 126.3 104 58.7
HPP92_012855 Vanilla planifolia HOM05D006470 ORTHO05D007978 3.0e-27 126.3 159 40.3
ATR0736G105 Amborella trichopoda HOM05D006470 ORTHO05D007978 3.7e-25 119.4 161 37.3
unitig_0.g163 Utricularia gibba HOM05D006470 ORTHO05D007978 2.6e-23 113.2 102 52.0
SEGI_23933 Sequoiadendron giganteum HOM05D006470 ORTHO05D007978 4.5e-23 112.5 176 37.5
SMO118G0043 Selaginella moellendorffii HOM05D006470 ORTHO05D007978 3.8e-22 109.4 164 38.4
CDE02G3387 Ceratophyllum demersum HOM05D006470 ORTHO05D007978 8.4e-22 108.2 182 33.5
ATR0681G334 Amborella trichopoda HOM05D006470 ORTHO05D007978 1.9e-21 107.1 162 40.1
Actinidia30147 Actinidia chinensis HOM05D006470 ORTHO05D007978 4.2e-21 105.9 84 60.7
Os06g0627500 Oryza sativa ssp. japonica HOM05D006470 ORTHO05D007978 2.7e-20 103.2 215 34.4
SMO358G0434 Selaginella moellendorffii HOM05D006470 ORTHO05D007978 2.7e-20 103.2 151 36.4
SMO146G0184 Selaginella moellendorffii HOM05D003233 ORTHO05D007978 1.5e-18 97.4 217 32.7
Hma1.2p1_0273F.1_g109440 Hydrangea macrophylla HOM05D006470 ORTHO05D007978 1.0e-14 84.7 188 34.0
Medtr1g069665 Medicago truncatula HOM05D006470 ORTHO05D007978 6.5e-14 82.0 167 34.1
AUR62008754 Chenopodium quinoa HOM05D006470 ORTHO05D007978 5.5e-13 79.0 117 41.9
Nn3g19710 Nelumbo nucifera HOM05D006470 ORTHO05D007978 2.3e-11 73.6 180 31.7
AagrBONN_evm.TU.Sc2ySwM_344.1086 Anthoceros agrestis HOM05D007391 ORTHO05D004210 4.8e-09 65.9 199 28.6
SMO339G0042 Selaginella moellendorffii HOM05D007391 ORTHO05D009446 1.4e-08 64.3 123 35.8
Mapoly0066s0046 Marchantia polymorpha HOM05D006470 ORTHO05D007978 4.1e-08 62.8 153 28.1
CDE02G2129 Ceratophyllum demersum HOM05D007391 ORTHO05D009446 3.4e-07 59.7 161 32.3
AagrBONN_evm.TU.Sc2ySwM_344.1632 Anthoceros agrestis HOM05D003233 ORTHO05D003694 5.9e-07 58.9 161 29.2
SEGI_17016 Sequoiadendron giganteum HOM05D004034 ORTHO05D004210 5.9e-07 58.9 152 30.3
arahy.Tifrunner.gnm1.ann1.9HLX1I Arachis hypogaea HOM05D007391 ORTHO05D009446 7.7e-07 58.5 164 31.1
arahy.Tifrunner.gnm1.ann1.QTUK9J Arachis hypogaea HOM05D007391 ORTHO05D009446 7.7e-07 58.5 164 31.1
Sed0009683 Sechium edule HOM05D007391 ORTHO05D009446 1.7e-06 57.4 147 32.0
SalBow6G6709 Salvia bowleyana HOM05D007391 ORTHO05D009446 2.9e-06 56.6 188 30.3
Zm00001eb159500 Zea mays HOM05D007391 ORTHO05D009446 3.8e-06 56.2 153 32.7
SalBow6G7005 Salvia bowleyana HOM05D007391 ORTHO05D009446 6.5e-06 55.5 188 30.3
Medtr1g069675 Medicago truncatula HOM05D006470 ORTHO05D007978 8.5e-06 55.1 88 35.2


User provided reference genes

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