Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG00G001430 Citrullus lanatus HOM05D004290 ORTHO05D005025 3.8e-90 334.7 157 100.0
ClCG05G023160 Citrullus lanatus HOM05D004290 ORTHO05D005025 3.8e-90 334.7 157 100.0
MELO3C012202.2 Cucumis melo HOM05D004290 ORTHO05D005025 3.4e-75 285.0 164 86.6
CsaV3_5G033840 Cucumis sativus L. HOM05D004290 ORTHO05D005025 9.3e-73 276.9 163 81.6
ClCG05G023170 Citrullus lanatus HOM05D004290 ORTHO05D005025 1.2e-72 276.6 154 85.7
Sed0009817 Sechium edule HOM05D004290 ORTHO05D005025 1.7e-66 256.1 156 76.9
CiPaw.05G172700 Carya illinoinensis HOM05D004290 ORTHO05D005025 3.6e-56 221.9 135 69.6
RcHm_v2.0_Chr4g0436191 Rosa chinensis HOM05D004290 ORTHO05D005025 5.1e-55 218.0 139 67.6
QL03p037189 Quercus lobata HOM05D004290 ORTHO05D005025 8.7e-55 217.2 143 65.0
CiPaw.05G172800 Carya illinoinensis HOM05D004290 ORTHO05D005025 1.5e-54 216.5 135 67.4
Ciclev10033020m.g Citrus clementina HOM05D004290 ORTHO05D005025 1.5e-54 216.5 135 68.9
CANSAT64G1327 Cannabis sativa HOM05D004290 ORTHO05D005025 1.9e-54 216.1 135 67.4
Nn4g23673 Nelumbo nucifera HOM05D004290 ORTHO05D005025 3.3e-54 215.3 140 65.0
Manes.06G074500 Manihot esculenta HOM05D004290 ORTHO05D005025 5.7e-54 214.5 137 67.2
RcHm_v2.0_Chr4g0436181 Rosa chinensis HOM05D004290 ORTHO05D005025 1.6e-53 213.0 139 70.5
CsaV3_5G028890 Cucumis sativus L. HOM05D004290 ORTHO05D005025 2.8e-53 212.2 142 66.9
Sabra08G0086600 Salix brachista HOM05D004290 ORTHO05D005025 3.7e-53 211.8 138 66.7
MELO3C005349.2 Cucumis melo HOM05D004290 ORTHO05D005025 6.3e-53 211.1 143 66.4
Duzib251G0274 Durio zibethinus HOM05D004290 ORTHO05D005025 6.3e-53 211.1 147 62.6
RcHm_v2.0_Chr2g0142071 Rosa chinensis HOM05D004290 ORTHO05D005025 6.3e-53 211.1 136 69.1
RcHm_v2.0_Chr2g0142081 Rosa chinensis HOM05D004290 ORTHO05D005025 6.3e-53 211.1 136 69.1
RcHm_v2.0_Chr2g0142111 Rosa chinensis HOM05D004290 ORTHO05D005025 6.3e-53 211.1 136 69.1
Potri.008G114300 Populus trichocarpa HOM05D004290 ORTHO05D005025 8.2e-53 210.7 137 66.4
Thecc.02G363400 Theobroma cacao HOM05D004290 ORTHO05D005025 1.1e-52 210.3 137 65.7
Sed0004732 Sechium edule HOM05D004290 ORTHO05D005025 1.8e-52 209.5 141 66.7
FvH4_6g24180 Fragaria vesca HOM05D004290 ORTHO05D005025 2.4e-52 209.1 136 66.9
FAN14G4265 Fragaria x ananassa HOM05D004290 ORTHO05D005025 2.4e-52 209.1 136 66.9
Aa31sc79G10 Aethionema arabicum HOM05D004290 ORTHO05D005025 3.1e-52 208.8 140 65.7
EL10Ac6g14527 Beta vulgaris HOM05D004290 ORTHO05D005025 3.1e-52 208.8 135 65.9
FAN09G0247 Fragaria x ananassa HOM05D004290 ORTHO05D005025 4.1e-52 208.4 138 66.7
QL03p036461 Quercus lobata HOM05D004290 ORTHO05D005025 4.1e-52 208.4 134 67.2
RcHm_v2.0_Chr2g0142121 Rosa chinensis HOM05D004290 ORTHO05D005025 4.1e-52 208.4 136 67.6
FvH4_4g28310 Fragaria vesca HOM05D004290 ORTHO05D005025 9.1e-52 207.2 139 66.2
FAN12G0523 Fragaria x ananassa HOM05D004290 ORTHO05D005025 9.1e-52 207.2 139 66.2
FAN17G1675 Fragaria x ananassa HOM05D004290 ORTHO05D005025 9.1e-52 207.2 139 66.2
Cfa008781 Carpinus fangiana HOM05D004290 ORTHO05D005025 1.2e-51 206.8 148 62.2
RcHm_v2.0_Chr6g0244161 Rosa chinensis HOM05D004290 ORTHO05D005025 1.2e-51 206.8 134 68.7
MD13G1049100 Malus domestica HOM05D004290 ORTHO05D005025 1.5e-51 206.5 141 67.4
COL.COLO4_07852 Corchorus olitorius HOM05D004290 ORTHO05D005025 2.6e-51 205.7 137 64.2
Haze_11793 Corylus avellana HOM05D004290 ORTHO05D005025 2.6e-51 205.7 148 62.2
FvH4_4g28340 Fragaria vesca HOM05D004290 ORTHO05D005025 2.6e-51 205.7 139 61.9
FAN09G2488 Fragaria x ananassa HOM05D004290 ORTHO05D005025 4.5e-51 204.9 139 66.9
FAN12G2228 Fragaria x ananassa HOM05D004290 ORTHO05D005025 5.9e-51 204.5 139 61.2
Ah.02g127350 Amaranthus hybridus HOM05D004290 ORTHO05D005025 7.7e-51 204.1 135 66.7
ClCG01G005800 Citrullus lanatus HOM05D004290 ORTHO05D005025 7.7e-51 204.1 178 56.2
FAN22G0640 Fragaria x ananassa HOM05D004290 ORTHO05D005025 7.7e-51 204.1 139 61.2
MD13G1048900 Malus domestica HOM05D004290 ORTHO05D005025 1.0e-50 203.8 135 65.9
Aqoxy3G03864 Aquilegia oxysepala HOM05D004290 ORTHO05D005025 1.3e-50 203.4 136 64.7
Hund05546 Selenicereus undatus HOM05D004290 ORTHO05D005025 1.3e-50 203.4 135 64.4
Lj3A1022T62 Lonicera japonica HOM05D004290 ORTHO05D005025 1.7e-50 203.0 139 62.6
Prupe.1G302800 Prunus persica HOM05D004290 ORTHO05D005025 1.7e-50 203.0 143 65.7
Gohir.A13G071200 Gossypium hirsutum HOM05D004290 ORTHO05D005025 2.2e-50 202.6 137 62.8
GSVIVG01011978001 Vitis vinifera HOM05D004290 ORTHO05D005025 3.8e-50 201.8 139 66.9
Gohir.D13G069200 Gossypium hirsutum HOM05D004290 ORTHO05D005025 5.0e-50 201.4 137 62.8
Gorai.013G079300 Gossypium raimondii HOM05D004290 ORTHO05D005025 5.0e-50 201.4 137 62.8
Sc04g0006830 Simmondsia chinensis HOM05D004290 ORTHO05D005025 8.5e-50 200.7 139 64.0
Migut.L01112 Erythranthe guttata HOM05D004290 ORTHO05D005025 1.1e-49 200.3 138 62.3
Prupe.1G303000 Prunus persica HOM05D004290 ORTHO05D005025 1.4e-49 199.9 145 58.6
AT1G68760 Arabidopsis thaliana HOM05D004290 ORTHO05D005025 2.5e-49 199.1 139 62.6
CARHR061580 Cardamine hirsuta HOM05D004290 ORTHO05D005025 4.2e-49 198.4 139 61.9
Cc11_g10800 Coffea canephora HOM05D004290 ORTHO05D005025 5.5e-49 198.0 137 62.8
MBI10_g35795_MAGBIO Magnolia biondii HOM05D004290 ORTHO05D005025 7.2e-49 197.6 132 65.9
arahy.Tifrunner.gnm1.ann1.IBNT6Z Arachis hypogaea HOM05D004290 ORTHO05D005025 9.4e-49 197.2 139 59.7
arahy.Tifrunner.gnm1.ann1.U655LF Arachis hypogaea HOM05D004290 ORTHO05D005025 9.4e-49 197.2 139 59.7
Eucgr.B03066 Eucalyptus grandis HOM05D004290 ORTHO05D005025 1.2e-48 196.8 138 63.0
FAN07G1902 Fragaria x ananassa HOM05D004290 ORTHO05D005025 1.2e-48 196.8 139 65.5
TWI31G0716 Tripterygium wilfordii HOM05D004290 ORTHO05D005025 1.2e-48 196.8 138 62.3
Peaxi162Scf00118g01310 Petunia axillaris HOM05D004290 ORTHO05D005025 1.6e-48 196.4 136 63.2
AL2G27690 Arabidopsis lyrata HOM05D004290 ORTHO05D005025 2.1e-48 196.1 134 64.9
Sp5g23870 Schrenkiella parvula HOM05D004290 ORTHO05D005025 2.1e-48 196.1 139 60.4
MD16G1050200 Malus domestica HOM05D004290 ORTHO05D005025 2.7e-48 195.7 135 65.2
Nitab4.5_0001178g0080 Nicotiana tabacum HOM05D004290 ORTHO05D005025 2.7e-48 195.7 139 61.9
Potri.008G114400 Populus trichocarpa HOM05D004290 ORTHO05D005025 2.7e-48 195.7 137 61.3
FAN12G2396 Fragaria x ananassa HOM05D004290 ORTHO05D005025 3.6e-48 195.3 139 64.0
PGR102G2310 Punica granatum HOM05D004290 ORTHO05D005025 3.6e-48 195.3 141 61.7
ATR1147G043 Amborella trichopoda HOM05D004290 ORTHO05D005025 6.1e-48 194.5 135 60.7
BcaB05g24409 Brassica carinata HOM05D004290 ORTHO05D005025 6.1e-48 194.5 135 61.5
Ca_19617_v3 Cicer arietinum L. HOM05D004290 ORTHO05D005025 6.1e-48 194.5 144 58.3
Ca_30768_v3 Cicer arietinum L. HOM05D004290 ORTHO05D005025 6.1e-48 194.5 144 58.3
Thhalv10019297m.g Eutrema salsugineum HOM05D004290 ORTHO05D005025 6.1e-48 194.5 141 61.7
FvH4_4g28300 Fragaria vesca HOM05D004290 ORTHO05D005025 6.1e-48 194.5 139 64.0
Nitab4.5_0013408g0010 Nicotiana tabacum HOM05D004290 ORTHO05D005025 6.1e-48 194.5 139 61.2
BraA02t06593Z Brassica rapa HOM05D004290 ORTHO05D005025 7.9e-48 194.1 136 62.5
HanXRQChr08g0214461 Helianthus annuus HOM05D004290 ORTHO05D005025 7.9e-48 194.1 136 60.3
Lj2g0025619 Lotus japonicus HOM05D004290 ORTHO05D005025 7.9e-48 194.1 139 63.3
DCAR_023699 Daucus carota HOM05D004290 ORTHO05D005025 1.8e-47 193.0 137 58.4
DCAR_026707 Daucus carota HOM05D004290 ORTHO05D005025 1.8e-47 193.0 137 60.6
Aqoxy3G03865 Aquilegia oxysepala HOM05D004290 ORTHO05D005025 2.3e-47 192.6 153 53.6
THA.LOC104821971 Tarenaya hassleriana HOM05D004290 ORTHO05D005025 2.3e-47 192.6 137 59.9
Dinv16527 Davidia involucrata HOM05D004290 ORTHO05D005025 3.0e-47 192.2 129 63.6
PSO478G2631 Papaver somniferum HOM05D004290 ORTHO05D005025 3.0e-47 192.2 138 58.7
A02p15320 Brassica napus HOM05D004290 ORTHO05D005025 3.9e-47 191.8 135 62.2
C02p25170 Brassica napus HOM05D004290 ORTHO05D005025 3.9e-47 191.8 136 61.8
AUR62007751 Chenopodium quinoa HOM05D004290 ORTHO05D005025 5.1e-47 191.4 138 62.3
Glyma.01G090900 Glycine max HOM05D004290 ORTHO05D005025 5.1e-47 191.4 151 57.6
Cc11_g10790 Coffea canephora HOM05D004290 ORTHO05D005025 6.7e-47 191.0 136 58.8
C04p37630 Brassica napus HOM05D004290 ORTHO05D005025 8.8e-47 190.7 136 61.8
SGA_v2.0_scaffold14G06802 Striga asiatica HOM05D004290 ORTHO05D005025 8.8e-47 190.7 139 58.3
MSTRG.7697 Avicennia marina HOM05D004290 ORTHO05D005025 1.5e-46 189.9 135 60.7
Psat2g074600 Pisum sativum HOM05D004290 ORTHO05D005025 1.5e-46 189.9 140 60.0
Prupe.1G302900 Prunus persica HOM05D004290 ORTHO05D005025 2.0e-46 189.5 137 65.0
BolC2t08596H Brassica oleracea HOM05D004290 ORTHO05D005025 3.3e-46 188.7 136 61.0
Dinv05808 Davidia involucrata HOM05D000436 ORTHO05D005025 3.3e-46 188.7 126 64.3
Phvul.003G024900 Phaseolus vulgaris HOM05D004290 ORTHO05D005025 4.4e-46 188.3 132 61.4
Solyc05g010015.1 Solanum lycopersicum HOM05D004290 ORTHO05D005025 4.4e-46 188.3 156 57.1
TPR.G33571 Trifolium pratense HOM05D004290 ORTHO05D005025 7.4e-46 187.6 142 62.0
AUR62002942 Chenopodium quinoa HOM05D004290 ORTHO05D005025 9.7e-46 187.2 138 61.6
SalBow8G1203 Salvia bowleyana HOM05D004290 ORTHO05D005025 1.3e-45 186.8 137 59.1
SalBow8G5193 Salvia bowleyana HOM05D004290 ORTHO05D005025 1.3e-45 186.8 137 59.1
Carub.0002s1532 Capsella rubella HOM05D004290 ORTHO05D005025 1.7e-45 186.4 139 59.0
Sopen05g005830 Solanum pennellii HOM05D004290 ORTHO05D005025 1.7e-45 186.4 155 55.5
DCAR_017507 Daucus carota HOM05D004290 ORTHO05D005025 3.7e-45 185.3 136 55.1
DCAR_026708 Daucus carota HOM05D004290 ORTHO05D005025 3.7e-45 185.3 136 55.1
SGA_v2.0_scaffold14G06801 Striga asiatica HOM05D004290 ORTHO05D005025 3.7e-45 185.3 139 56.1
CSS0026618 Camellia sinensis var. sinensis HOM05D004290 ORTHO05D005025 1.1e-44 183.7 157 57.3
Medtr5g062660 Medicago truncatula HOM05D004290 ORTHO05D005025 1.1e-44 183.7 139 59.7
PGSC0003DMG400030259 Solanum tuberosum HOM05D004290 ORTHO05D005025 1.1e-44 183.7 140 57.1
Lalb_Chr04g0255051 Lupinus albus HOM05D004290 ORTHO05D005025 1.8e-44 183.0 139 59.0
Solyc03g043860.2 Solanum lycopersicum HOM05D004290 ORTHO05D005025 5.3e-44 181.4 140 57.1
HanXRQChr16g0528791 Helianthus annuus HOM05D004290 ORTHO05D005025 6.9e-44 181.0 139 58.3
RcHm_v2.0_Chr4g0436151 Rosa chinensis HOM05D004290 ORTHO05D005025 6.9e-44 181.0 139 60.4
MD16G1050100 Malus domestica HOM05D004290 ORTHO05D005025 1.2e-43 180.3 140 57.9
ECA234G2024 Erigeron canadensis HOM05D004290 ORTHO05D005025 2.0e-43 179.5 139 56.8
Prupe.1G303100 Prunus persica HOM05D004290 ORTHO05D005025 2.6e-43 179.1 141 60.3
BcaC03g14984 Brassica carinata HOM05D004290 ORTHO05D005025 2.9e-42 175.6 135 57.8
HanXRQChr16g0528801 Helianthus annuus HOM05D004290 ORTHO05D005025 2.9e-42 175.6 137 56.2
HPP92_021836 Vanilla planifolia HOM05D004290 ORTHO05D005025 2.9e-42 175.6 142 54.2
ECA233G1907 Erigeron canadensis HOM05D004290 ORTHO05D005025 1.1e-41 173.7 136 54.4
Prupe.1G300800 Prunus persica HOM05D004290 ORTHO05D005025 1.4e-41 173.3 141 58.9
SalBow8G3034 Salvia bowleyana HOM05D004290 ORTHO05D005025 2.5e-41 172.6 137 55.5
CDE10G0275 Ceratophyllum demersum HOM05D004290 ORTHO05D005025 7.2e-41 171.0 138 54.3
Lsat_1_v5_gn_4_17281 Lactuca sativa HOM05D004290 ORTHO05D005025 9.4e-41 170.6 139 56.1
FAN22G2200 Fragaria x ananassa HOM05D004290 ORTHO05D005025 4.7e-40 168.3 205 43.9
SalBow8G2020 Salvia bowleyana HOM05D004290 ORTHO05D005025 4.7e-40 168.3 137 51.8
Lsat_1_v5_gn_8_37520 Lactuca sativa HOM05D004290 ORTHO05D005025 1.4e-39 166.8 128 55.5
QL03p036408 Quercus lobata HOM05D004290 ORTHO05D005025 3.0e-39 165.6 97 72.2
unitig_744.g24286 Utricularia gibba HOM05D004290 ORTHO05D005025 3.0e-39 165.6 146 49.3
Pp3c20_17780 Physcomitrium patens HOM05D004290 ORTHO05D005025 3.9e-39 165.2 135 50.4
Oeu044394.1 Olea europaea HOM05D004290 ORTHO05D005025 6.7e-39 164.5 134 54.5
AagrBONN_evm.TU.Sc2ySwM_344.2294 Anthoceros agrestis HOM05D004290 ORTHO05D005025 2.6e-38 162.5 141 48.9
Peaxi162Scf00367g00519 Petunia axillaris HOM05D004290 ORTHO05D005025 2.6e-38 162.5 155 51.6
Sopen03g007670 Solanum pennellii HOM05D004290 ORTHO05D005025 1.7e-37 159.8 140 52.9
Actinidia14836 Actinidia chinensis HOM05D000436 ORTHO05D000678 1.1e-36 157.1 115 65.2
Mapoly0059s0094 Marchantia polymorpha HOM05D004290 ORTHO05D005025 1.1e-36 157.1 136 47.8
ATR1147G035 Amborella trichopoda HOM05D004290 ORTHO05D005025 1.2e-35 153.7 145 48.3
FAN09G1140 Fragaria x ananassa HOM05D005343 ORTHO05D007153 1.0e-34 150.6 96 67.7
FAN12G1909 Fragaria x ananassa HOM05D004290 ORTHO05D005025 2.2e-34 149.4 141 53.2
FvH4_4g28280 Fragaria vesca HOM05D004290 ORTHO05D005025 1.1e-33 147.1 145 49.0
CAN.G184.70 Capsicum annuum HOM05D004290 ORTHO05D005025 7.2e-33 144.4 112 58.9
MSTRG.13496 Avicennia marina HOM05D004290 ORTHO05D005025 9.4e-33 144.1 138 47.8
CBR_g26184 Chara braunii HOM05D004290 ORTHO05D005025 2.1e-32 142.9 136 44.1
Cre03.g184400 Chlamydomonas reinhardtii HOM05D004290 ORTHO05D005025 1.6e-27 126.7 138 40.6
Peaxi162Scf00367g00520 Petunia axillaris HOM05D004290 ORTHO05D005025 1.5e-25 120.2 125 48.0
Rhsim09G0114000 Rhododendron simsii HOM05D000436 ORTHO05D000678 1.5e-22 110.2 93 60.2
Solyc03g150121.1 Solanum lycopersicum HOM05D004290 ORTHO05D005025 1.8e-20 103.2 104 49.0
Aqoxy3G02627 Aquilegia oxysepala HOM05D004290 ORTHO05D005025 2.4e-20 102.8 71 54.9
PRCOL_00005217 Prasinoderma coloniale HOM05D004290 ORTHO05D005025 2.0e-19 99.8 130 40.8
Nitab4.5_0005210g0010 Nicotiana tabacum HOM05D004290 ORTHO05D005025 7.7e-19 97.8 116 43.1
MCO10G139 Micromonas commoda HOM05D004290 ORTHO05D005025 1.7e-18 96.7 131 38.2
RcHm_v2.0_Chr2g0142051 Rosa chinensis HOM05D004290 ORTHO05D005025 1.5e-17 93.6 51 70.6
RcHm_v2.0_Chr2g0142061 Rosa chinensis HOM05D004290 ORTHO05D005025 1.9e-17 93.2 65 69.2
FAN02G2314 Fragaria x ananassa HOM05D004290 ORTHO05D005025 3.3e-17 92.4 68 64.7
vmacro10513 Vaccinium macrocarpon HOM05D004290 ORTHO05D005025 1.2e-16 90.5 90 51.1
Prupe.1G303300 Prunus persica HOM05D004290 ORTHO05D005025 2.8e-16 89.4 103 48.5
Oeu018290.1 Olea europaea HOM05D004290 ORTHO05D005025 2.3e-15 86.3 50 64.0
MD13G1048800 Malus domestica HOM05D004290 ORTHO05D005025 3.7e-13 79.0 62 54.8
Sopen03g019130 Solanum pennellii HOM05D006181 ORTHO05D008560 2.4e-12 76.3 73 56.2
TAR629G2250 Trochodendron aralioides HOM05D004290 ORTHO05D005025 2.3e-10 69.7 39 61.5
BcaB03g15846 Brassica carinata HOM05D004290 ORTHO05D005025 5.6e-09 65.1 71 52.1
Pp3c14_12120 Physcomitrium patens HOM05D004174 ORTHO05D004624 4.0e-07 58.9 142 29.6
FvH4_6g51211 Fragaria vesca HOM05D004290 ORTHO05D005025 5.2e-07 58.5 41 61.0
Cre07.g336000 Chlamydomonas reinhardtii HOM05D065225 ORTHO05D044221 5.8e-06 55.1 163 27.6


User provided reference genes

Program Settings