Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG00G000520 Citrullus lanatus HOM05D000540 ORTHO05D008105 6.1e-146 520.8 261 100.0
ClCG00G000530 Citrullus lanatus HOM05D000540 ORTHO05D008105 3.8e-79 298.9 171 87.1
Nn1g09992 Nelumbo nucifera HOM05D000540 ORTHO05D008105 6.6e-23 112.1 94 63.8
Nn1g10092 Nelumbo nucifera HOM05D000540 ORTHO05D008105 6.6e-23 112.1 94 63.8
Solyc00g500273.1 Solanum lycopersicum HOM05D000540 ORTHO05D008105 1.1e-22 111.3 90 65.6
Lj2A1229G102 Lonicera japonica HOM05D000540 ORTHO05D000681 1.9e-22 110.5 153 47.7
CANSAT16G0016 Cannabis sativa HOM05D000540 ORTHO05D008105 2.8e-21 106.7 85 67.1
Nitab4.5_0011987g0020 Nicotiana tabacum HOM05D000540 ORTHO05D008105 4.7e-21 105.9 85 64.7
Nn1g10001 Nelumbo nucifera HOM05D000540 ORTHO05D008105 1.1e-20 104.8 85 65.9
Solyc00g500245.1 Solanum lycopersicum HOM05D001987 ORTHO05D006514 1.4e-20 104.4 120 50.0
PGSC0003DMG400021035 Solanum tuberosum HOM05D000540 ORTHO05D008105 3.1e-20 103.2 85 64.7
SGA_v2.0_scaffold507G52537 Striga asiatica HOM05D000540 ORTHO05D000681 4.0e-20 102.8 134 48.5
GSVIVG01038017001 Vitis vinifera HOM05D000540 ORTHO05D008105 2.0e-19 100.5 85 62.4
SHI36701 Sapria himalayana HOM05D000540 ORTHO05D008105 5.8e-19 99.0 127 50.4
Sopen00g002770 Solanum pennellii HOM05D004291 ORTHO05D005620 5.8e-19 99.0 64 78.1
SHI51272 Sapria himalayana HOM05D000540 ORTHO05D000681 9.8e-19 98.2 123 51.2
SHI49875 Sapria himalayana HOM05D000540 ORTHO05D000681 1.3e-18 97.8 122 50.8
SHI53038 Sapria himalayana HOM05D000540 ORTHO05D000681 1.3e-18 97.8 122 50.8
GSVIVG01027360001 Vitis vinifera HOM05D000540 ORTHO05D008105 1.7e-18 97.4 65 73.8
SHI45733 Sapria himalayana HOM05D000540 ORTHO05D000681 2.2e-18 97.1 174 43.1
SHI27340 Sapria himalayana HOM05D000540 ORTHO05D000681 4.9e-18 95.9 121 52.1
SHI35858 Sapria himalayana HOM05D000540 ORTHO05D008105 4.9e-18 95.9 122 51.6
SHI38513 Sapria himalayana HOM05D000540 ORTHO05D000681 4.9e-18 95.9 122 51.6
SHI40568 Sapria himalayana HOM05D000540 ORTHO05D000681 4.9e-18 95.9 122 51.6
SHI48062 Sapria himalayana HOM05D000540 ORTHO05D000681 4.9e-18 95.9 106 55.7
SHI50522 Sapria himalayana HOM05D000540 ORTHO05D000681 4.9e-18 95.9 122 51.6
SHI50600 Sapria himalayana HOM05D000540 ORTHO05D000681 4.9e-18 95.9 130 50.0
SHI31828 Sapria himalayana HOM05D000540 ORTHO05D000681 6.4e-18 95.5 147 46.9
SHI37858 Sapria himalayana HOM05D000540 ORTHO05D000681 6.4e-18 95.5 147 46.9
SHI37906 Sapria himalayana HOM05D000540 ORTHO05D000681 6.4e-18 95.5 147 46.9
SHI37965 Sapria himalayana HOM05D000540 ORTHO05D000681 6.4e-18 95.5 147 46.9
SHI38052 Sapria himalayana HOM05D000540 ORTHO05D000681 6.4e-18 95.5 147 46.9
SHI38194 Sapria himalayana HOM05D000540 ORTHO05D000681 6.4e-18 95.5 147 46.9
SHI38471 Sapria himalayana HOM05D000540 ORTHO05D000681 6.4e-18 95.5 147 46.9
SHI38589 Sapria himalayana HOM05D000540 ORTHO05D000681 6.4e-18 95.5 147 46.9
SHI38605 Sapria himalayana HOM05D000540 ORTHO05D000681 6.4e-18 95.5 147 46.9
SHI38868 Sapria himalayana HOM05D000540 ORTHO05D000681 6.4e-18 95.5 147 46.9
SHI41069 Sapria himalayana HOM05D000540 ORTHO05D000681 6.4e-18 95.5 147 46.9
SHI43265 Sapria himalayana HOM05D000540 ORTHO05D000681 6.4e-18 95.5 147 46.9
SHI43312 Sapria himalayana HOM05D000540 ORTHO05D000681 6.4e-18 95.5 147 46.9
SHI53542 Sapria himalayana HOM05D000540 ORTHO05D000681 6.4e-18 95.5 147 46.9
SHI34991 Sapria himalayana HOM05D000540 ORTHO05D000681 8.3e-18 95.1 60 80.0
SHI51026 Sapria himalayana HOM05D000540 ORTHO05D000681 8.3e-18 95.1 122 50.8
SHI38050 Sapria himalayana HOM05D000540 ORTHO05D000681 1.1e-17 94.7 122 51.6
SHI44879 Sapria himalayana HOM05D000540 ORTHO05D008105 1.1e-17 94.7 113 51.3
Rhsim11G0036800 Rhododendron simsii HOM05D000540 ORTHO05D008105 1.4e-17 94.4 94 57.4
SHI38983 Sapria himalayana HOM05D000540 ORTHO05D008105 1.4e-17 94.4 128 50.8
SHI40340 Sapria himalayana HOM05D000540 ORTHO05D000681 1.4e-17 94.4 121 51.2
SHI54850 Sapria himalayana HOM05D000540 ORTHO05D008105 1.4e-17 94.4 128 50.8
SHI37876 Sapria himalayana HOM05D000540 ORTHO05D000681 1.9e-17 94.0 147 46.9
SHI38387 Sapria himalayana HOM05D000540 ORTHO05D000681 1.9e-17 94.0 121 51.2
SHI37554 Sapria himalayana HOM05D000540 ORTHO05D008105 4.1e-17 92.8 129 48.1
SHI37326 Sapria himalayana HOM05D000540 ORTHO05D000681 9.2e-17 91.7 202 37.1
MELO3C011310.2 Cucumis melo HOM05D000540 ORTHO05D008105 1.2e-16 91.3 83 55.4
Nitab4.5_0000334g0010 Nicotiana tabacum HOM05D000540 ORTHO05D008105 2.1e-16 90.5 66 68.2
Nitab4.5_0001153g0100 Nicotiana tabacum HOM05D000540 ORTHO05D008105 2.7e-16 90.1 85 54.1
Hund07747 Selenicereus undatus HOM05D000540 ORTHO05D008105 3.5e-16 89.7 79 57.0
Ah.08g216160 Amaranthus hybridus HOM05D000540 ORTHO05D008105 6.0e-16 89.0 87 49.4
Nitab4.5_0009703g0070 Nicotiana tabacum HOM05D000540 ORTHO05D008105 1.0e-15 88.2 77 61.0
SHI37000 Sapria himalayana HOM05D000540 ORTHO05D000681 1.7e-15 87.4 147 44.9
Atru.chr7.1082 Acer truncatum HOM05D000540 ORTHO05D008105 3.0e-15 86.7 77 53.2
ClCG03G011250 Citrullus lanatus HOM05D000540 ORTHO05D000001 3.0e-15 86.7 45 93.3
Atru.chr1.3246 Acer truncatum HOM05D000540 ORTHO05D008105 6.6e-15 85.5 77 51.9
Ciclev10002977m.g Citrus clementina HOM05D000540 ORTHO05D008105 6.6e-15 85.5 77 51.9
CsaV3_2G032570 Cucumis sativus L. HOM05D000540 ORTHO05D008105 6.6e-15 85.5 83 51.8
DCAR_015262 Daucus carota HOM05D000540 ORTHO05D008105 1.1e-14 84.7 84 52.4
SHI38319 Sapria himalayana HOM05D000540 ORTHO05D000681 1.1e-14 84.7 111 47.7
SHI34608 Sapria himalayana HOM05D000540 ORTHO05D000681 1.5e-14 84.3 53 79.2
Sc06g0008940 Simmondsia chinensis HOM05D000540 ORTHO05D008105 1.5e-14 84.3 77 55.8
Cfa009693 Carpinus fangiana HOM05D002804 ORTHO05D003755 2.5e-14 83.6 87 47.1
Haze_23044 Corylus avellana HOM05D004763 ORTHO05D007492 2.5e-14 83.6 87 48.3
SHI54942 Sapria himalayana HOM05D000540 ORTHO05D008105 2.5e-14 83.6 54 77.8
Zm00001eb003570 Zea mays HOM05D000540 ORTHO05D008105 5.6e-14 82.4 74 55.4
Zm00001eb049250 Zea mays HOM05D000540 ORTHO05D008105 5.6e-14 82.4 74 55.4
BolC1t03932H Brassica oleracea HOM05D000540 ORTHO05D008105 9.5e-14 81.6 86 53.5
AT5G47320 Arabidopsis thaliana HOM05D000540 ORTHO05D008105 1.2e-13 81.3 87 50.6
CAN.G993.9 Capsicum annuum HOM05D003467 ORTHO05D008105 1.2e-13 81.3 44 88.6
Zm00001eb219510 Zea mays HOM05D000540 ORTHO05D008105 1.2e-13 81.3 74 54.1
A01p31250 Brassica napus HOM05D000540 ORTHO05D008105 1.6e-13 80.9 83 50.6
C01p39820 Brassica napus HOM05D000540 ORTHO05D008105 2.8e-13 80.1 77 54.5
BraA01t03249Z Brassica rapa HOM05D000540 ORTHO05D008105 2.8e-13 80.1 86 52.3
AL8G10730 Arabidopsis lyrata HOM05D000540 ORTHO05D008105 3.6e-13 79.7 87 50.6
Zm00001eb321850 Zea mays HOM05D000540 ORTHO05D008105 3.6e-13 79.7 74 52.7
BcaB04g20419 Brassica carinata HOM05D000540 ORTHO05D008105 4.7e-13 79.3 86 51.2
BraA03t13476Z Brassica rapa HOM05D000540 ORTHO05D008105 4.7e-13 79.3 89 49.4
Thhalv10002665m.g Eutrema salsugineum HOM05D000540 ORTHO05D008105 4.7e-13 79.3 86 51.2
Zm00001eb321840 Zea mays HOM05D000540 ORTHO05D008105 4.7e-13 79.3 74 52.7
BcaB06g26544 Brassica carinata HOM05D000540 ORTHO05D008105 6.2e-13 79.0 86 51.2
BcaC06g35575 Brassica carinata HOM05D000540 ORTHO05D008105 6.2e-13 79.0 86 51.2
A07p08550 Brassica napus HOM05D000540 ORTHO05D008105 6.2e-13 79.0 86 51.2
C07p13360 Brassica napus HOM05D000540 ORTHO05D008105 6.2e-13 79.0 86 51.2
BolC7t41830H Brassica oleracea HOM05D000540 ORTHO05D008105 6.2e-13 79.0 86 51.2
BraA07t28644Z Brassica rapa HOM05D000540 ORTHO05D008105 6.2e-13 79.0 86 51.2
A03p43380 Brassica napus HOM05D000540 ORTHO05D008105 1.4e-12 77.8 74 54.1
Carub.0008s0045 Capsella rubella HOM05D000540 ORTHO05D008105 1.4e-12 77.8 87 49.4
Sp3g21530 Schrenkiella parvula HOM05D000540 ORTHO05D008105 1.8e-12 77.4 86 50.0
Eucgr.D00430 Eucalyptus grandis HOM05D000540 ORTHO05D008105 2.3e-12 77.0 80 48.8
BolC3t17591H Brassica oleracea HOM05D000540 ORTHO05D008105 3.1e-12 76.6 118 42.4
CiPaw.04G013600 Carya illinoinensis HOM05D002804 ORTHO05D003755 3.1e-12 76.6 74 50.0
Sp7g05780 Schrenkiella parvula HOM05D000540 ORTHO05D008105 4.0e-12 76.3 86 51.2
BcaC01g03363 Brassica carinata HOM05D000540 ORTHO05D008105 5.2e-12 75.9 88 47.7
Medtr5g085270 Medicago truncatula HOM05D000540 ORTHO05D008105 1.2e-11 74.7 70 51.4
Prupe.2G123500 Prunus persica HOM05D000540 ORTHO05D008105 2.6e-11 73.6 99 42.4
Thecc.02G009100 Theobroma cacao HOM05D000540 ORTHO05D008105 3.4e-11 73.2 76 50.0
FAN04G1833 Fragaria x ananassa HOM05D000540 ORTHO05D008105 4.4e-11 72.8 77 45.5
Medtr7g106780 Medicago truncatula HOM05D000540 ORTHO05D008105 5.8e-11 72.4 70 50.0
Aa31LG8G10410 Aethionema arabicum HOM05D000540 ORTHO05D008105 7.6e-11 72.0 74 50.0
C03p53300 Brassica napus HOM05D000540 ORTHO05D008105 7.6e-11 72.0 88 45.5
Lj3g0015602 Lotus japonicus HOM05D000540 ORTHO05D008105 7.6e-11 72.0 70 51.4
RcHm_v2.0_Chr7g0212161 Rosa chinensis HOM05D000540 ORTHO05D008105 7.6e-11 72.0 109 38.5
Solyc12g035810.1 Solanum lycopersicum HOM05D000540 ORTHO05D008105 9.9e-11 71.6 85 50.6
Glyma.08G106800 Glycine max HOM05D000540 ORTHO05D008105 2.9e-10 70.1 70 50.0
FAN08G1475 Fragaria x ananassa HOM05D000540 ORTHO05D008105 4.9e-10 69.3 109 36.7
Manes.07G029100 Manihot esculenta HOM05D000540 ORTHO05D008105 4.9e-10 69.3 73 49.3
Ca_09077_v3 Cicer arietinum L. HOM05D000540 ORTHO05D008105 6.4e-10 68.9 70 50.0
Ca_22805_v3 Cicer arietinum L. HOM05D000540 ORTHO05D008105 6.4e-10 68.9 70 50.0
FvH4_5g23230 Fragaria vesca HOM05D000540 ORTHO05D008105 6.4e-10 68.9 109 36.7
FAN18G0695 Fragaria x ananassa HOM05D000540 ORTHO05D008105 6.4e-10 68.9 109 36.7
FAN18G3733 Fragaria x ananassa HOM05D000540 ORTHO05D008105 6.4e-10 68.9 109 36.7
Lalb_Chr10g0097221 Lupinus albus HOM05D000540 ORTHO05D008105 8.4e-10 68.6 73 49.3
MD02G1217700 Malus domestica HOM05D000540 ORTHO05D008105 8.4e-10 68.6 71 46.5
MD07G1100000 Malus domestica HOM05D000540 ORTHO05D008105 8.4e-10 68.6 71 46.5
MBI05_g05349_MAGBIO Magnolia biondii HOM05D016544 ORTHO05D017245 1.1e-09 68.2 35 88.6
Sabra13G0107600 Salix brachista HOM05D000540 ORTHO05D008105 1.1e-09 68.2 78 41.0
TPR.G25660 Trifolium pratense HOM05D000540 ORTHO05D008105 1.1e-09 68.2 70 50.0
TPR.G34443 Trifolium pratense HOM05D000540 ORTHO05D008105 1.1e-09 68.2 70 50.0
arahy.Tifrunner.gnm1.ann1.WZXK6X Arachis hypogaea HOM05D000540 ORTHO05D008105 1.4e-09 67.8 77 45.5
Potri.013G129600 Populus trichocarpa HOM05D000540 ORTHO05D008105 1.4e-09 67.8 78 38.5
Phvul.001G167500 Phaseolus vulgaris HOM05D000540 ORTHO05D008105 1.9e-09 67.4 70 48.6
VMungo1383G2423 Vigna mungo HOM05D001610 ORTHO05D001585 1.9e-09 67.4 70 48.6
arahy.Tifrunner.gnm1.ann1.3CPC1Y Arachis hypogaea HOM05D000540 ORTHO05D008105 2.4e-09 67.0 70 48.6
Glyma.05G150000 Glycine max HOM05D000540 ORTHO05D008105 3.2e-09 66.6 70 47.1
Gohir.A03G217200 Gossypium hirsutum HOM05D000540 ORTHO05D008105 3.2e-09 66.6 76 47.4
Gohir.D02G238800 Gossypium hirsutum HOM05D000540 ORTHO05D008105 3.2e-09 66.6 76 47.4
Gorai.005G267300 Gossypium raimondii HOM05D000540 ORTHO05D008105 3.2e-09 66.6 76 47.4
SHI41065 Sapria himalayana HOM05D000540 ORTHO05D000681 5.4e-09 65.9 47 70.2
Zm00001eb293400 Zea mays HOM05D042568 ORTHO05D008105 7.1e-09 65.5 54 57.4
Nitab4.5_0000351g0280 Nicotiana tabacum HOM05D000540 ORTHO05D008105 9.2e-09 65.1 33 87.9
Solyc05g045820.1 Solanum lycopersicum HOM05D000540 ORTHO05D008105 9.2e-09 65.1 61 59.0
SHI35194 Sapria himalayana HOM05D000540 ORTHO05D000681 1.2e-08 64.7 52 67.3
SHI40214 Sapria himalayana HOM05D000540 ORTHO05D000681 1.7e-07 60.8 68 52.9
ATR0661G283 Amborella trichopoda HOM05D000540 ORTHO05D000681 1.1e-06 58.2 94 47.9
Solyc05g045760.1 Solanum lycopersicum HOM05D000540 ORTHO05D008105 3.3e-06 56.6 75 48.0


User provided reference genes

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