Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10033778m.g Citrus clementina HOM05D006911 ORTHO05D006663 1.2e-36 156.0 76 100.0
COL.COLO4_07174 Corchorus olitorius HOM05D006911 ORTHO05D006663 1.4e-18 95.9 76 61.8
Potri.005G203800 Populus trichocarpa HOM05D006911 ORTHO05D006663 1.9e-18 95.5 76 63.2
Thecc.01G170800 Theobroma cacao HOM05D006911 ORTHO05D006663 3.2e-18 94.7 76 64.5
Duzib133G0070 Durio zibethinus HOM05D006911 ORTHO05D006663 5.4e-18 94.0 76 65.8
Manes.07G101802 Manihot esculenta HOM05D006911 ORTHO05D006663 1.2e-17 92.8 77 66.2
Potri.002G058400 Populus trichocarpa HOM05D006911 ORTHO05D006663 7.3e-15 83.6 76 56.6
Prupe.3G175200 Prunus persica HOM05D006911 ORTHO05D006663 1.2e-14 82.8 74 60.8
FvH4_6g38520 Fragaria vesca HOM05D006911 ORTHO05D006663 1.6e-14 82.4 71 63.4
FAN02G1638 Fragaria x ananassa HOM05D006911 ORTHO05D006663 1.6e-14 82.4 71 63.4
FAN14G5866 Fragaria x ananassa HOM05D006911 ORTHO05D006663 1.6e-14 82.4 71 63.4
Gohir.D11G163600 Gossypium hirsutum HOM05D006911 ORTHO05D006663 1.6e-14 82.4 70 61.4
Gorai.007G174300 Gossypium raimondii HOM05D006911 ORTHO05D006663 1.6e-14 82.4 70 61.4
Gohir.A11G156500 Gossypium hirsutum HOM05D006911 ORTHO05D006663 2.8e-14 81.6 67 62.7
RcHm_v2.0_Chr2g0151771 Rosa chinensis HOM05D006911 ORTHO05D006663 2.8e-14 81.6 71 62.0
MD09G1150000 Malus domestica HOM05D006911 ORTHO05D006663 1.4e-13 79.3 74 58.1
MD17G1137200 Malus domestica HOM05D006911 ORTHO05D006663 2.4e-13 78.6 74 59.5
TWI14G1424 Tripterygium wilfordii HOM05D006911 ORTHO05D006663 3.1e-13 78.2 78 56.4
Potri.004G131200 Populus trichocarpa HOM05D006911 ORTHO05D006663 4.0e-13 77.8 74 52.7
QL08p044828 Quercus lobata HOM05D006911 ORTHO05D006663 2.0e-12 75.5 74 63.5
THA.LOC104800829 Tarenaya hassleriana HOM05D006911 ORTHO05D006663 4.4e-12 74.3 61 60.7
Potri.011G079900 Populus trichocarpa HOM05D006911 ORTHO05D006663 9.9e-12 73.2 70 50.0
Sp1g05240 Schrenkiella parvula HOM05D006911 ORTHO05D006663 9.9e-12 73.2 67 55.2
Gohir.A10G039300 Gossypium hirsutum HOM05D006911 ORTHO05D006663 1.3e-11 72.8 72 54.2
Cpa.g.sc50.102 Carica papaya HOM05D006911 ORTHO05D006663 2.2e-11 72.0 70 51.4
Cfa023065 Carpinus fangiana HOM05D006911 ORTHO05D006663 2.2e-11 72.0 73 57.5
Haze_13522 Corylus avellana HOM05D006911 ORTHO05D006663 2.2e-11 72.0 73 57.5
COL.COLO4_24713 Corchorus olitorius HOM05D006911 ORTHO05D006663 2.9e-11 71.6 69 53.6
Gohir.D10G040100 Gossypium hirsutum HOM05D006911 ORTHO05D006663 2.9e-11 71.6 72 52.8
Gorai.011G042200 Gossypium raimondii HOM05D006911 ORTHO05D006663 2.9e-11 71.6 72 52.8
Medtr5g091310 Medicago truncatula HOM05D006911 ORTHO05D006663 2.9e-11 71.6 76 51.3
C05p04730 Brassica napus HOM05D006911 ORTHO05D006663 3.8e-11 71.2 84 47.6
BolC5t29245H Brassica oleracea HOM05D006911 ORTHO05D006663 3.8e-11 71.2 84 47.6
arahy.Tifrunner.gnm1.ann1.A53T08 Arachis hypogaea HOM05D006911 ORTHO05D006663 4.9e-11 70.9 76 53.9
arahy.Tifrunner.gnm1.ann1.M9VZ51 Arachis hypogaea HOM05D006911 ORTHO05D006663 6.4e-11 70.5 76 53.9
QL05p059038 Quercus lobata HOM05D006911 ORTHO05D006663 6.4e-11 70.5 73 47.9
Thecc.06G153400 Theobroma cacao HOM05D006911 ORTHO05D006663 6.4e-11 70.5 69 50.7
Glyma.14G029400 Glycine max HOM05D006911 ORTHO05D006663 8.4e-11 70.1 74 56.8
Nn3g20669 Nelumbo nucifera HOM05D006911 ORTHO05D006663 8.4e-11 70.1 60 51.7
CSS0014266 Camellia sinensis var. sinensis HOM05D006911 ORTHO05D006663 1.1e-10 69.7 73 53.4
CSS0033096 Camellia sinensis var. sinensis HOM05D006911 ORTHO05D006663 1.1e-10 69.7 73 53.4
Nn4g26517 Nelumbo nucifera HOM05D006911 ORTHO05D006663 1.4e-10 69.3 70 48.6
TWI09G0032 Tripterygium wilfordii HOM05D006911 ORTHO05D006663 1.4e-10 69.3 66 54.5
BraA10t42779Z Brassica rapa HOM05D006911 ORTHO05D006663 1.9e-10 68.9 84 46.4
CiPaw.04G139200 Carya illinoinensis HOM05D006911 ORTHO05D006663 2.4e-10 68.6 70 52.9
COL.COLO4_38300 Corchorus olitorius HOM05D006911 ORTHO05D006663 2.4e-10 68.6 70 51.4
Lalb_Chr04g0248851 Lupinus albus HOM05D006911 ORTHO05D006663 2.4e-10 68.6 75 49.3
Thhalv10009210m.g Eutrema salsugineum HOM05D006911 ORTHO05D006663 4.1e-10 67.8 69 49.3
LjContig00049g0014504 Lotus japonicus HOM05D006911 ORTHO05D006663 4.1e-10 67.8 76 51.3
Gorai.010G239100 Gossypium raimondii HOM05D006911 ORTHO05D006663 5.4e-10 67.4 77 48.1
BcaB02g06798 Brassica carinata HOM05D006911 ORTHO05D006663 9.2e-10 66.6 85 45.9
Gohir.D06G205000 Gossypium hirsutum HOM05D006911 ORTHO05D006663 9.2e-10 66.6 77 48.1
Gohir.D05G152400 Gossypium hirsutum HOM05D006911 ORTHO05D006663 1.2e-09 66.2 69 49.3
Migut.M00927 Erythranthe guttata HOM05D006911 ORTHO05D006663 1.6e-09 65.9 57 54.4
Gohir.A06G197500 Gossypium hirsutum HOM05D006911 ORTHO05D006663 1.6e-09 65.9 77 46.8
MBI10_g27413_MAGBIO Magnolia biondii HOM05D006911 ORTHO05D006663 2.1e-09 65.5 71 45.1
Carub.0001s0584 Capsella rubella HOM05D006911 ORTHO05D006663 3.5e-09 64.7 68 51.5
Eucgr.A02012 Eucalyptus grandis HOM05D006911 ORTHO05D006663 4.6e-09 64.3 88 42.0
Manes.15G119700 Manihot esculenta HOM05D006911 ORTHO05D006663 4.6e-09 64.3 47 68.1
Sed0027001 Sechium edule HOM05D006911 ORTHO05D006663 4.6e-09 64.3 76 52.6
Gohir.A05G149800 Gossypium hirsutum HOM05D006911 ORTHO05D006663 6.0e-09 63.9 69 47.8
AL1G16490 Arabidopsis lyrata HOM05D006911 ORTHO05D006663 1.3e-08 62.8 67 50.7
Ciclev10017350m.g Citrus clementina HOM05D006911 ORTHO05D006663 1.7e-08 62.4 69 47.8
ClCG03G007000 Citrullus lanatus HOM05D006911 ORTHO05D006663 2.3e-08 62.0 53 58.5
Manes.10G042300 Manihot esculenta HOM05D006911 ORTHO05D006663 3.0e-08 61.6 76 46.1
Oeu052383.1 Olea europaea HOM05D006911 ORTHO05D006663 3.9e-08 61.2 57 49.1
CiPaw.09G126200 Carya illinoinensis HOM05D006911 ORTHO05D006663 5.1e-08 60.8 73 45.2
CARHR006090 Cardamine hirsuta HOM05D006911 ORTHO05D006663 6.6e-08 60.5 76 43.4
BcaC03g16844 Brassica carinata HOM05D010376 ORTHO05D006663 8.7e-08 60.1 76 47.4
A02p29830 Brassica napus HOM05D010376 ORTHO05D006663 1.1e-07 59.7 76 46.1
Lj6g0027673 Lotus japonicus HOM05D006911 ORTHO05D006663 1.1e-07 59.7 76 47.4
MD05G1287000 Malus domestica HOM05D006911 ORTHO05D006663 1.1e-07 59.7 73 47.9
SalBow6G3836 Salvia bowleyana HOM05D006911 ORTHO05D006663 1.1e-07 59.7 60 48.3
Migut.H01374 Erythranthe guttata HOM05D006911 ORTHO05D006663 1.5e-07 59.3 46 58.7
RcHm_v2.0_Chr5g0013541 Rosa chinensis HOM05D006911 ORTHO05D006663 1.5e-07 59.3 76 44.7
C07p29520 Brassica napus HOM05D010376 ORTHO05D006663 1.9e-07 58.9 76 47.4
BolC7t43501H Brassica oleracea HOM05D010376 ORTHO05D006663 1.9e-07 58.9 76 47.4
FAN21G0769 Fragaria x ananassa HOM05D006911 ORTHO05D006663 1.9e-07 58.9 76 44.7
SalBow7G2931 Salvia bowleyana HOM05D006911 ORTHO05D006663 1.9e-07 58.9 60 48.3
AT1G06475 Arabidopsis thaliana HOM05D006911 ORTHO05D006663 2.5e-07 58.5 46 63.0
BcaC03g16845 Brassica carinata HOM05D010376 ORTHO05D006663 3.3e-07 58.2 76 46.1
C02p47270 Brassica napus HOM05D010376 ORTHO05D006663 3.3e-07 58.2 76 46.1
Lsat_1_v5_gn_7_7541 Lactuca sativa HOM05D006911 ORTHO05D006663 3.3e-07 58.2 56 51.8
A06p46010 Brassica napus HOM05D010376 ORTHO05D006663 4.3e-07 57.8 76 46.1
BraA06t27465Z Brassica rapa HOM05D010376 ORTHO05D006663 4.3e-07 57.8 76 46.1
Manes.17G067900 Manihot esculenta HOM05D006911 ORTHO05D006663 4.3e-07 57.8 47 57.4
Thhalv10001093m.g Eutrema salsugineum HOM05D010376 ORTHO05D006663 5.6e-07 57.4 76 47.4
Aa31LG1G7540 Aethionema arabicum HOM05D006911 ORTHO05D006663 7.3e-07 57.0 42 64.3
BcaC06g31483 Brassica carinata HOM05D010376 ORTHO05D006663 7.3e-07 57.0 76 46.1
PGR083G1670 Punica granatum HOM05D006911 ORTHO05D006663 7.3e-07 57.0 77 44.2
Lsat_1_v5_gn_1_96620 Lactuca sativa HOM05D006911 ORTHO05D006663 9.6e-07 56.6 55 47.3
Prupe.4G077900 Prunus persica HOM05D006911 ORTHO05D006663 9.6e-07 56.6 76 43.4
RcHm_v2.0_Chr7g0229651 Rosa chinensis HOM05D006911 ORTHO05D006663 9.6e-07 56.6 76 42.1
TPR.G4919 Trifolium pratense HOM05D006911 ORTHO05D006663 9.6e-07 56.6 66 45.5
BcaB07g30843 Brassica carinata HOM05D010376 ORTHO05D006663 1.2e-06 56.2 76 43.4
Carub.0008s0161 Capsella rubella HOM05D010376 ORTHO05D006663 1.2e-06 56.2 50 54.0
Gorai.009G156500 Gossypium raimondii HOM05D006911 ORTHO05D006663 1.2e-06 56.2 65 44.6
Medtr4g094630 Medicago truncatula HOM05D006911 ORTHO05D006663 1.2e-06 56.2 77 44.2
Nitab4.5_0001040g0170 Nicotiana tabacum HOM05D024954 ORTHO05D006663 1.6e-06 55.8 59 47.5
Phvul.006G031600 Phaseolus vulgaris HOM05D006911 ORTHO05D006663 1.6e-06 55.8 77 48.1
THA.LOC104806122 Tarenaya hassleriana HOM05D010376 ORTHO05D006663 1.6e-06 55.8 53 50.9
Phvul.008G193200 Phaseolus vulgaris HOM05D006911 ORTHO05D006663 2.1e-06 55.5 61 49.2
AT5G46295 Arabidopsis thaliana HOM05D010376 ORTHO05D006663 2.8e-06 55.1 76 47.4
Cc09_g08880 Coffea canephora HOM05D006911 ORTHO05D006663 2.8e-06 55.1 55 45.5
Medtr4g094635 Medicago truncatula HOM05D006911 ORTHO05D006663 3.6e-06 54.7 76 42.1
Lalb_Chr07g0188701 Lupinus albus HOM05D006911 ORTHO05D006663 4.7e-06 54.3 83 39.8
Lalb_Chr10g0106611 Lupinus albus HOM05D006911 ORTHO05D006663 4.7e-06 54.3 74 44.6
Sed0000672 Sechium edule HOM05D006911 ORTHO05D006663 4.7e-06 54.3 46 56.5
Lj4g0007682 Lotus japonicus HOM05D006911 ORTHO05D006663 6.2e-06 53.9 46 54.3
ATR0585G110 Amborella trichopoda HOM05D006911 ORTHO05D006663 8.1e-06 53.5 68 45.6
CSS0032663 Camellia sinensis var. sinensis HOM05D006911 ORTHO05D006663 8.1e-06 53.5 75 38.7
Glyma.08G083800 Glycine max HOM05D006911 ORTHO05D006663 8.1e-06 53.5 74 41.9


User provided reference genes

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