Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10033693m.g Citrus clementina HOM05D005782 ORTHO05D007436 3.0e-105 385.2 197 100.0
Haze_21249 Corylus avellana HOM05D005782 ORTHO05D007436 1.6e-90 336.3 197 84.3
Manes.05G205900 Manihot esculenta HOM05D005782 ORTHO05D007436 2.8e-90 335.5 197 83.8
CDE04G3649 Ceratophyllum demersum HOM05D005782 ORTHO05D007436 2.3e-89 332.4 197 80.2
CSS0047952 Camellia sinensis var. sinensis HOM05D005782 ORTHO05D007436 6.8e-89 330.9 197 82.7
Atru.chr7.1036 Acer truncatum HOM05D005782 ORTHO05D007436 1.2e-88 330.1 197 82.2
Sc09g0007530 Simmondsia chinensis HOM05D005782 ORTHO05D007436 1.2e-88 330.1 197 81.2
GSVIVG01032240001 Vitis vinifera HOM05D005782 ORTHO05D007436 1.2e-88 330.1 197 82.7
CDE02G4601 Ceratophyllum demersum HOM05D005782 ORTHO05D007436 1.5e-88 329.7 197 78.7
CsaV3_2G009240 Cucumis sativus L. HOM05D005782 ORTHO05D007436 4.4e-88 328.2 197 81.7
Potri.006G080100 Populus trichocarpa HOM05D005782 ORTHO05D007436 4.4e-88 328.2 197 80.2
Thecc.09G201300 Theobroma cacao HOM05D005782 ORTHO05D007436 4.4e-88 328.2 197 81.7
AL7G21030 Arabidopsis lyrata HOM05D005782 ORTHO05D007436 5.8e-88 327.8 197 81.2
arahy.Tifrunner.gnm1.ann1.05JXYY Arachis hypogaea HOM05D005782 ORTHO05D007436 5.8e-88 327.8 197 81.2
arahy.Tifrunner.gnm1.ann1.PZIB41 Arachis hypogaea HOM05D005782 ORTHO05D007436 5.8e-88 327.8 197 81.2
Carub.0007s0948 Capsella rubella HOM05D005782 ORTHO05D007436 5.8e-88 327.8 197 81.2
MD10G1290500 Malus domestica HOM05D005782 ORTHO05D007436 5.8e-88 327.8 197 80.7
PGR142G1608 Punica granatum HOM05D005782 ORTHO05D007436 7.5e-88 327.4 197 82.2
CARHR238950 Cardamine hirsuta HOM05D005782 ORTHO05D007436 9.8e-88 327.0 197 81.2
AT4G31040 Arabidopsis thaliana HOM05D005782 ORTHO05D007436 1.3e-87 326.6 197 80.7
TWI32G0667 Tripterygium wilfordii HOM05D005782 ORTHO05D007436 1.3e-87 326.6 197 79.7
Prupe.1G002100 Prunus persica HOM05D005782 ORTHO05D007436 1.7e-87 326.2 197 80.2
Sp7g28920 Schrenkiella parvula HOM05D005782 ORTHO05D007436 1.7e-87 326.2 197 81.2
Gohir.A05G000300 Gossypium hirsutum HOM05D005782 ORTHO05D007436 2.9e-87 325.5 197 80.7
MD04G1001800 Malus domestica HOM05D005782 ORTHO05D007436 2.9e-87 325.5 197 79.2
Sed0017765 Sechium edule HOM05D005782 ORTHO05D007436 2.9e-87 325.5 197 81.2
CiPaw.08G000500 Carya illinoinensis HOM05D005782 ORTHO05D007436 3.7e-87 325.1 197 81.7
Gorai.009G000300 Gossypium raimondii HOM05D005782 ORTHO05D007436 3.7e-87 325.1 197 80.2
Thhalv10025215m.g Eutrema salsugineum HOM05D005782 ORTHO05D007436 4.9e-87 324.7 197 80.2
Gohir.D05G000500 Gossypium hirsutum HOM05D005782 ORTHO05D007436 4.9e-87 324.7 197 80.2
BcaNung03419 Brassica carinata HOM05D005782 ORTHO05D007436 8.3e-87 323.9 197 80.2
A01p07130 Brassica napus HOM05D005782 ORTHO05D007436 8.3e-87 323.9 197 80.2
BraA01t00665Z Brassica rapa HOM05D005782 ORTHO05D007436 8.3e-87 323.9 197 80.2
THA.LOC104803572 Tarenaya hassleriana HOM05D005782 ORTHO05D007436 8.3e-87 323.9 197 80.2
Eucgr.C02158 Eucalyptus grandis HOM05D005782 ORTHO05D007436 1.1e-86 323.6 197 80.2
FvH4_4g00180 Fragaria vesca HOM05D005782 ORTHO05D007436 1.1e-86 323.6 197 79.7
Potri.018G150000 Populus trichocarpa HOM05D005782 ORTHO05D007436 1.1e-86 323.6 197 78.7
Cc06_g23670 Coffea canephora HOM05D005782 ORTHO05D007436 1.4e-86 323.2 197 80.2
Glyma.08G359700 Glycine max HOM05D005782 ORTHO05D007436 1.9e-86 322.8 197 79.7
BcaC09g51891 Brassica carinata HOM05D005782 ORTHO05D007436 2.4e-86 322.4 197 80.2
C01p07890 Brassica napus HOM05D005782 ORTHO05D007436 2.4e-86 322.4 197 80.2
BolC1t00776H Brassica oleracea HOM05D005782 ORTHO05D007436 2.4e-86 322.4 197 80.2
TPR.G21340 Trifolium pratense HOM05D005782 ORTHO05D007436 2.4e-86 322.4 197 79.7
Ca_25640_v3 Cicer arietinum L. HOM05D005782 ORTHO05D007436 3.2e-86 322.0 197 79.7
AUR62002224 Chenopodium quinoa HOM05D005782 ORTHO05D007436 4.1e-86 321.6 197 79.2
CANSAT80G1379 Cannabis sativa HOM05D005782 ORTHO05D007436 7.0e-86 320.9 197 78.2
SGA_v2.0_scaffold318G48485 Striga asiatica HOM05D005782 ORTHO05D007436 7.0e-86 320.9 197 79.7
Ah.13g066690 Amaranthus hybridus HOM05D005782 ORTHO05D007436 9.2e-86 320.5 197 80.2
ATR0626G413 Amborella trichopoda HOM05D005782 ORTHO05D007436 1.2e-85 320.1 197 79.2
Lalb_Chr24g0401711 Lupinus albus HOM05D005782 ORTHO05D007436 1.2e-85 320.1 197 79.2
TAR383G0506 Trochodendron aralioides HOM05D005782 ORTHO05D007436 1.2e-85 320.1 197 80.7
Aqoxy7G02605 Aquilegia oxysepala HOM05D005782 ORTHO05D007436 1.6e-85 319.7 197 80.2
RcHm_v2.0_Chr4g0384781 Rosa chinensis HOM05D005782 ORTHO05D007436 1.6e-85 319.7 197 78.2
Nitab4.5_0000807g0130 Nicotiana tabacum HOM05D005782 ORTHO05D007436 2.1e-85 319.3 197 79.7
THA.LOC104804495 Tarenaya hassleriana HOM05D005782 ORTHO05D007436 2.1e-85 319.3 197 79.7
Lj2g0003070 Lotus japonicus HOM05D005782 ORTHO05D007436 6.0e-85 317.8 197 78.2
EL10Ac3g05861 Beta vulgaris HOM05D005782 ORTHO05D007436 7.8e-85 317.4 197 78.2
MSTRG.19410 Avicennia marina HOM05D005782 ORTHO05D007436 6.6e-84 314.3 197 78.7
HanXRQChr03g0067061 Helianthus annuus HOM05D005782 ORTHO05D007436 8.6e-84 313.9 197 78.2
Actinidia07556 Actinidia chinensis HOM05D005782 ORTHO05D007436 4.3e-83 311.6 197 78.7
ECA240G2713 Erigeron canadensis HOM05D000006 ORTHO05D000001 1.6e-82 309.7 197 76.1
Sabra06G0060600 Salix brachista HOM05D005782 ORTHO05D007436 1.6e-82 309.7 233 67.8
MSTRG.5969 Avicennia marina HOM05D005782 ORTHO05D007436 4.7e-82 308.1 197 76.6
FAN12G2371 Fragaria x ananassa HOM05D005782 ORTHO05D007436 8.1e-82 307.4 228 68.9
CAN.G63.1 Capsicum annuum HOM05D005782 ORTHO05D007436 5.2e-81 304.7 200 77.0
Migut.J00857 Erythranthe guttata HOM05D005782 ORTHO05D007436 1.2e-80 303.5 197 76.1
Os08g0224300 Oryza sativa ssp. japonica HOM05D005782 ORTHO05D007436 4.9e-79 298.1 197 73.1
Zm00001eb000720 Zea mays HOM05D005782 ORTHO05D007436 8.3e-79 297.4 197 72.6
VMungo0464G0621 Vigna mungo HOM05D005782 ORTHO05D007436 2.4e-78 295.8 174 83.9
Nn8g41244 Nelumbo nucifera HOM05D005782 ORTHO05D007436 3.2e-78 295.4 174 83.9
Zm00001eb000750 Zea mays HOM05D005782 ORTHO05D007436 4.1e-78 295.0 197 71.6
MBI16_g00821_MAGBIO Magnolia biondii HOM05D005782 ORTHO05D007436 7.1e-78 294.3 174 83.3
Zm00001eb404240 Zea mays HOM05D005782 ORTHO05D007436 9.2e-78 293.9 197 72.6
COL.COLO4_07529 Corchorus olitorius HOM05D006202 ORTHO05D008227 4.6e-77 291.6 174 81.6
AUR62015437 Chenopodium quinoa HOM05D005782 ORTHO05D007436 1.0e-76 290.4 174 80.5
Oeu021242.1 Olea europaea HOM05D005782 ORTHO05D007436 2.5e-75 285.8 175 78.3
Aa31LG2G19280 Aethionema arabicum HOM05D005782 ORTHO05D007436 3.3e-75 285.4 175 78.3
Nitab4.5_0000170g0200 Nicotiana tabacum HOM05D005782 ORTHO05D007436 3.3e-75 285.4 175 80.6
BcaNung02727 Brassica carinata HOM05D005782 ORTHO05D007436 7.3e-75 284.3 206 71.8
HPP92_020428 Vanilla planifolia HOM05D005782 ORTHO05D007436 3.6e-74 282.0 197 70.6
PSO063G1085 Papaver somniferum HOM05D005782 ORTHO05D007436 2.4e-73 279.3 197 70.6
PSO170G1242 Papaver somniferum HOM05D005782 ORTHO05D007436 5.2e-73 278.1 197 70.1
Rhsim01G0103700 Rhododendron simsii HOM05D005782 ORTHO05D007436 1.2e-72 276.9 194 70.1
RhsimUnG0238700 Rhododendron simsii HOM05D005782 ORTHO05D007436 1.2e-72 276.9 194 70.1
Sopen07g022440 Solanum pennellii HOM05D005782 ORTHO05D007436 1.5e-72 276.6 197 72.1
MBI13_g33574_MAGBIO Magnolia biondii HOM05D005782 ORTHO05D007436 1.3e-71 273.5 173 78.0
Psat1g051920 Pisum sativum HOM05D005782 ORTHO05D007436 1.3e-68 263.5 197 66.5
SEGI_19916 Sequoiadendron giganteum HOM05D005782 ORTHO05D007436 1.4e-65 253.4 197 62.9
vmacro20737 Vaccinium macrocarpon HOM05D005782 ORTHO05D007436 2.9e-63 245.7 167 72.5
Pp3c4_7870 Physcomitrium patens HOM05D005782 ORTHO05D007436 1.3e-60 236.9 197 57.4
A03p60520 Brassica napus HOM05D005782 ORTHO05D007436 1.1e-59 233.8 140 83.6
BraA03t15091Z Brassica rapa HOM05D005782 ORTHO05D007436 1.1e-59 233.8 140 83.6
Hund04583 Selenicereus undatus HOM05D005782 ORTHO05D007436 9.6e-59 230.7 139 77.7
AagrBONN_evm.TU.Sc2ySwM_117.1743 Anthoceros agrestis HOM05D005782 ORTHO05D007436 8.1e-58 227.6 197 57.4
Mapoly0066s0016 Marchantia polymorpha HOM05D005782 ORTHO05D007436 4.0e-57 225.3 197 54.3
Peaxi162Scf00474g00221 Petunia axillaris HOM05D005782 ORTHO05D007436 3.4e-56 222.2 159 69.2
ClCG11G011190 Citrullus lanatus HOM05D005782 ORTHO05D007436 4.9e-55 218.4 245 52.7
Duzib150G0032 Durio zibethinus HOM05D005782 ORTHO05D007436 1.4e-54 216.9 132 84.1
CBR_g84827 Chara braunii HOM05D005782 ORTHO05D007436 2.1e-53 213.0 197 54.8
Pp3c10_12270 Physcomitrium patens HOM05D005782 ORTHO05D007436 2.1e-53 213.0 175 58.9
DCAR_014583 Daucus carota HOM05D005782 ORTHO05D010280 6.0e-53 211.5 129 84.5
BolC7t46295H Brassica oleracea HOM05D005782 ORTHO05D007436 1.0e-52 210.7 197 57.9
C07p58400 Brassica napus HOM05D005782 ORTHO05D007436 3.1e-49 199.1 197 55.8
Solyc07g042820.3 Solanum lycopersicum HOM05D005782 ORTHO05D007436 1.2e-48 197.2 145 67.6
Lsat_1_v5_gn_7_57180 Lactuca sativa HOM05D005782 ORTHO05D007436 7.9e-45 184.5 174 57.5
MELO3C003909.2 Cucumis melo HOM05D005782 ORTHO05D007436 4.0e-41 172.2 103 84.5
FAN17G0526 Fragaria x ananassa HOM05D005782 ORTHO05D007436 4.0e-41 172.2 197 48.2
Cfa012886 Carpinus fangiana HOM05D005782 ORTHO05D007436 2.0e-40 169.9 96 88.5
QL11p007002 Quercus lobata HOM05D005782 ORTHO05D007436 2.2e-39 166.4 100 75.0
QL11p006989 Quercus lobata HOM05D005782 ORTHO05D007436 1.4e-38 163.7 99 82.8
FAN22G1527 Fragaria x ananassa HOM05D005782 ORTHO05D007436 9.3e-38 161.0 98 81.6
Medtr6g093210 Medicago truncatula HOM05D005782 ORTHO05D007436 2.7e-37 159.5 96 83.3
A08p18910 Brassica napus HOM05D005782 ORTHO05D007436 1.4e-28 130.6 121 64.5
unitig_578.g15870 Utricularia gibba HOM05D000412 ORTHO05D000429 3.0e-28 129.4 176 43.2
Glyma.01G001100 Glycine max HOM05D005782 ORTHO05D007436 1.5e-27 127.1 77 79.2
Cre06.g260250 Chlamydomonas reinhardtii HOM05D005782 ORTHO05D007436 1.2e-24 117.5 186 37.6
PRCOL_00003075 Prasinoderma coloniale HOM05D005782 ORTHO05D007436 2.6e-19 99.8 180 36.1
Gohir.A05G000250 Gossypium hirsutum HOM05D005782 ORTHO05D007436 4.4e-19 99.0 58 84.5
Phvul.L001608 Phaseolus vulgaris HOM05D005782 ORTHO05D007436 4.4e-19 99.0 58 84.5
Cpa.g.sc91.69 Carica papaya HOM05D005782 ORTHO05D007436 9.7e-19 97.8 58 84.5
BcaC01g01117 Brassica carinata HOM05D005782 ORTHO05D027183 4.8e-18 95.5 93 62.4
Lj5A796G22 Lonicera japonica HOM05D005782 ORTHO05D007436 1.8e-17 93.6 58 82.8
HPP92_020430 Vanilla planifolia HOM05D005782 ORTHO05D007436 2.4e-17 93.2 59 79.7
Actinidia02544 Actinidia chinensis HOM05D005782 ORTHO05D007436 5.0e-15 85.5 56 76.8
Lj5A796T24 Lonicera japonica HOM05D005782 ORTHO05D007436 3.6e-13 79.3 49 67.3
Dinv26495 Davidia involucrata HOM05D000001 ORTHO05D010280 2.3e-12 76.6 116 39.7
SEGI_11203 Sequoiadendron giganteum HOM05D006976 ORTHO05D008761 1.1e-11 74.3 115 28.7
DCAR_032496 Daucus carota HOM05D006976 ORTHO05D008761 1.5e-11 73.9 98 31.6
Solyc07g042810.3 Solanum lycopersicum HOM05D005782 ORTHO05D007436 3.3e-11 72.8 49 77.6
CAN.G129.10 Capsicum annuum HOM05D006976 ORTHO05D008761 8.2e-10 68.2 135 27.4
Eucgr.I02539 Eucalyptus grandis HOM05D006976 ORTHO05D008761 8.2e-10 68.2 110 31.8
Sed0001172 Sechium edule HOM05D006976 ORTHO05D008761 1.1e-09 67.8 101 31.7
Oeu012774.1 Olea europaea HOM05D006976 ORTHO05D008761 2.4e-09 66.6 115 27.0
Prupe.7G029500 Prunus persica HOM05D006976 ORTHO05D008761 2.4e-09 66.6 122 27.9
EL10Ac4g09265 Beta vulgaris HOM05D006976 ORTHO05D008761 3.1e-09 66.2 124 29.0
Phvul.002G278108 Phaseolus vulgaris HOM05D006976 ORTHO05D008761 3.1e-09 66.2 121 28.1
Eucgr.E01114 Eucalyptus grandis HOM05D006976 ORTHO05D008761 4.1e-09 65.9 114 29.8
HanXRQChr01g0020351 Helianthus annuus HOM05D006976 ORTHO05D008761 4.1e-09 65.9 121 26.4
HanXRQChr10g0283561 Helianthus annuus HOM05D006976 ORTHO05D008761 4.1e-09 65.9 121 26.4
HanXRQChr10g0284251 Helianthus annuus HOM05D006976 ORTHO05D008761 4.1e-09 65.9 121 26.4
HanXRQChr10g0289271 Helianthus annuus HOM05D006976 ORTHO05D008761 4.1e-09 65.9 121 26.4
HanXRQChr10g0318191 Helianthus annuus HOM05D006976 ORTHO05D008761 4.1e-09 65.9 121 26.4
HanXRQChr11g0326831 Helianthus annuus HOM05D006976 ORTHO05D008761 4.1e-09 65.9 121 26.4
HanXRQChr15g0497531 Helianthus annuus HOM05D006976 ORTHO05D008761 4.1e-09 65.9 121 26.4
HanXRQChr16g0528991 Helianthus annuus HOM05D006976 ORTHO05D008761 4.1e-09 65.9 121 26.4
HanXRQCPg0580041 Helianthus annuus HOM05D006976 ORTHO05D008761 4.1e-09 65.9 121 26.4
Nn2g14969 Nelumbo nucifera HOM05D006976 ORTHO05D008761 4.1e-09 65.9 121 28.9
PGR111G0047 Punica granatum HOM05D006976 ORTHO05D008761 4.1e-09 65.9 121 27.3
FvH4_3g27991 Fragaria vesca HOM05D006976 ORTHO05D008761 7.0e-09 65.1 121 27.3
RcHm_v2.0_CPg0502081 Rosa chinensis HOM05D006976 ORTHO05D008761 7.0e-09 65.1 121 27.3
SalBow1G3572 Salvia bowleyana HOM05D006976 ORTHO05D008761 7.0e-09 65.1 121 27.3
Migut.D01165 Erythranthe guttata HOM05D006976 ORTHO05D008761 9.1e-09 64.7 95 29.5
PSO548G0011 Papaver somniferum HOM05D006976 ORTHO05D008761 9.1e-09 64.7 121 28.1
AL2G20664 Arabidopsis lyrata HOM05D006976 ORTHO05D008761 1.6e-08 63.9 132 26.5
BcaC03g16543 Brassica carinata HOM05D006976 ORTHO05D008761 1.6e-08 63.9 132 26.5
A06p23180 Brassica napus HOM05D006976 ORTHO05D008761 1.6e-08 63.9 132 26.5
C09p40240 Brassica napus HOM05D006976 ORTHO05D008761 1.6e-08 63.9 132 26.5
BolC9t56930H Brassica oleracea HOM05D006976 ORTHO05D008761 1.6e-08 63.9 132 26.5
BolSC29t60590H Brassica oleracea HOM05D006976 ORTHO05D008761 1.6e-08 63.9 132 26.5
BolSC35t60749H Brassica oleracea HOM05D006976 ORTHO05D008761 1.6e-08 63.9 132 26.5
BolSC46t61034H Brassica oleracea HOM05D006976 ORTHO05D008761 1.6e-08 63.9 132 26.5
BolSC47t61096H Brassica oleracea HOM05D006976 ORTHO05D008761 1.6e-08 63.9 132 26.5
BraA06t25422Z Brassica rapa HOM05D006976 ORTHO05D008761 1.6e-08 63.9 132 26.5
BraSC25t45865Z Brassica rapa HOM05D006976 ORTHO05D008761 1.6e-08 63.9 132 26.5
arahy.Tifrunner.gnm1.ann1.Z0BJS7 Arachis hypogaea HOM05D000806 ORTHO05D002324 2.0e-08 63.5 167 22.8
Eucgr.E02607 Eucalyptus grandis HOM05D006976 ORTHO05D008761 3.5e-08 62.8 105 30.5
HanXRQChr17g0548241 Helianthus annuus HOM05D006976 ORTHO05D008761 3.5e-08 62.8 112 26.8
QL93p0999_0001 Quercus lobata HOM05D006976 ORTHO05D008761 3.5e-08 62.8 98 29.6
ATCG00530 Arabidopsis thaliana HOM05D006976 ORTHO05D008761 4.5e-08 62.4 178 23.6
C02p43530 Brassica napus HOM05D006976 ORTHO05D008761 4.5e-08 62.4 179 24.0
CARHR282110 Cardamine hirsuta HOM05D006976 ORTHO05D008761 4.5e-08 62.4 178 23.6
Thhalv10010976m.g Eutrema salsugineum HOM05D006976 ORTHO05D008761 5.9e-08 62.0 183 24.0
Potri.016G094100 Populus trichocarpa HOM05D006976 ORTHO05D008761 5.9e-08 62.0 88 31.8
Hund28750 Selenicereus undatus HOM05D006976 ORTHO05D008761 7.7e-08 61.6 122 27.9
EL10As15g24128 Beta vulgaris HOM05D000806 ORTHO05D002324 1.0e-07 61.2 115 28.7
Glyma.07G028150 Glycine max HOM05D006976 ORTHO05D008761 1.0e-07 61.2 113 29.2
Lj2P1239T139 Lonicera japonica HOM05D006976 ORTHO05D008761 1.0e-07 61.2 122 26.2
Potri.013G162300 Populus trichocarpa HOM05D006976 ORTHO05D008761 1.0e-07 61.2 88 31.8
Gohir.A09G041060 Gossypium hirsutum HOM05D006976 ORTHO05D008761 2.2e-07 60.1 107 29.0
Lalb_Chr23g0274511 Lupinus albus HOM05D006976 ORTHO05D008761 3.8e-07 59.3 119 26.9
Hund29806 Selenicereus undatus HOM05D000806 ORTHO05D002324 6.5e-07 58.5 113 28.3
Zm00001eb404230 Zea mays HOM05D005782 ORTHO05D007436 8.5e-07 58.2 37 70.3
GSVIVG01029875001 Vitis vinifera HOM05D006976 ORTHO05D008761 1.5e-06 57.4 121 24.8
CAN.G232.11 Capsicum annuum HOM05D006976 ORTHO05D008761 3.2e-06 56.2 135 23.0
Hund07993 Selenicereus undatus HOM05D000806 ORTHO05D002324 7.2e-06 55.1 172 22.7


User provided reference genes

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