Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10033682m.g Citrus clementina HOM05D008199 ORTHO05D010334 6.3e-31 136.7 66 100.0
Thecc.10G048500 Theobroma cacao HOM05D008199 ORTHO05D010334 1.3e-15 85.9 43 88.4
Dinv31422 Davidia involucrata HOM05D000953 ORTHO05D000231 4.9e-15 84.0 41 90.2
Atru.chr12.520 Acer truncatum HOM05D008199 ORTHO05D010334 8.3e-15 83.2 46 82.6
Manes.07G111800 Manihot esculenta HOM05D008199 ORTHO05D010334 4.1e-14 80.9 39 92.3
Actinidia07733 Actinidia chinensis HOM05D008199 ORTHO05D010334 5.4e-14 80.5 40 87.5
Actinidia34336 Actinidia chinensis HOM05D008199 ORTHO05D010334 5.4e-14 80.5 40 87.5
Cpa.g.sc1.358 Carica papaya HOM05D008199 ORTHO05D010334 7.0e-14 80.1 43 83.7
CSS0014372 Camellia sinensis var. sinensis HOM05D008199 ORTHO05D010334 1.2e-13 79.3 40 87.5
Nn2g10469 Nelumbo nucifera HOM05D008199 ORTHO05D010334 1.2e-13 79.3 39 89.7
Gohir.D04G061900 Gossypium hirsutum HOM05D008199 ORTHO05D010334 2.0e-13 78.6 43 76.7
Gohir.A05G350700 Gossypium hirsutum HOM05D008199 ORTHO05D010334 2.7e-13 78.2 43 76.7
Gorai.012G069200 Gossypium raimondii HOM05D008199 ORTHO05D010334 2.7e-13 78.2 43 76.7
THA.LOC104824262 Tarenaya hassleriana HOM05D008199 ORTHO05D010334 2.7e-13 78.2 43 76.7
Manes.10G036000 Manihot esculenta HOM05D008199 ORTHO05D010334 5.9e-13 77.0 41 80.5
Actinidia02971 Actinidia chinensis HOM05D008199 ORTHO05D010334 7.8e-13 76.6 40 85.0
PGR142G1326 Punica granatum HOM05D008199 ORTHO05D010334 7.8e-13 76.6 39 84.6
Potri.008G051100 Populus trichocarpa HOM05D008199 ORTHO05D010334 1.0e-12 76.3 39 87.2
ECA238G2613 Erigeron canadensis HOM05D008199 ORTHO05D010334 1.3e-12 75.9 41 78.0
Sc20g0002530 Simmondsia chinensis HOM05D008199 ORTHO05D010334 1.3e-12 75.9 39 84.6
Cfa001517 Carpinus fangiana HOM05D008199 ORTHO05D010334 1.7e-12 75.5 39 84.6
Oeu021440.1 Olea europaea HOM05D008199 ORTHO05D010334 1.7e-12 75.5 40 80.0
BcaC02g12078 Brassica carinata HOM05D008199 ORTHO05D010334 2.9e-12 74.7 43 74.4
A05p06880 Brassica napus HOM05D008199 ORTHO05D010334 2.9e-12 74.7 43 74.4
C04p08150 Brassica napus HOM05D008199 ORTHO05D010334 2.9e-12 74.7 43 74.4
BolC4t22425H Brassica oleracea HOM05D008199 ORTHO05D010334 2.9e-12 74.7 43 74.4
BraA05t19653Z Brassica rapa HOM05D008199 ORTHO05D010334 2.9e-12 74.7 43 74.4
COL.COLO4_14948 Corchorus olitorius HOM05D008199 ORTHO05D010334 2.9e-12 74.7 63 54.0
Medtr1g115355 Medicago truncatula HOM05D008199 ORTHO05D010334 2.9e-12 74.7 39 82.1
Psat6g236360 Pisum sativum HOM05D008199 ORTHO05D010334 2.9e-12 74.7 39 82.1
Sed0003138 Sechium edule HOM05D008199 ORTHO05D010334 2.9e-12 74.7 46 71.7
CiPaw.01G282700 Carya illinoinensis HOM05D008199 ORTHO05D010334 3.9e-12 74.3 39 84.6
CAN.G74.25 Capsicum annuum HOM05D008199 ORTHO05D010334 5.0e-12 73.9 40 82.5
Lsat_1_v5_gn_2_117560 Lactuca sativa HOM05D008199 ORTHO05D010334 5.0e-12 73.9 41 78.0
RcHm_v2.0_Chr1g0366131 Rosa chinensis HOM05D008199 ORTHO05D010334 5.0e-12 73.9 39 82.1
Aa31LG5G20100 Aethionema arabicum HOM05D008199 ORTHO05D010334 6.6e-12 73.6 43 69.8
CANSAT11G0099 Cannabis sativa HOM05D008199 ORTHO05D010334 1.1e-11 72.8 39 82.1
TWI38G1458 Tripterygium wilfordii HOM05D008199 ORTHO05D010334 1.1e-11 72.8 39 82.1
GSVIVG01016602001 Vitis vinifera HOM05D000953 ORTHO05D000231 1.1e-11 72.8 39 76.9
CARHR134390 Cardamine hirsuta HOM05D008199 ORTHO05D010334 1.5e-11 72.4 43 69.8
Sp4g21800 Schrenkiella parvula HOM05D008199 ORTHO05D010334 1.5e-11 72.4 43 69.8
PGSC0003DMG400029465 Solanum tuberosum HOM05D008199 ORTHO05D010334 1.5e-11 72.4 39 82.1
ClCG09G020150 Citrullus lanatus HOM05D008199 ORTHO05D010334 1.9e-11 72.0 41 78.0
Hma1.2p1_0727F.1_g209100 Hydrangea macrophylla HOM05D008199 ORTHO05D010334 2.5e-11 71.6 40 75.0
MD01G1123400 Malus domestica HOM05D008199 ORTHO05D010334 2.5e-11 71.6 39 79.5
Prupe.2G230900 Prunus persica HOM05D008199 ORTHO05D010334 2.5e-11 71.6 39 79.5
Lj5g0016979 Lotus japonicus HOM05D008199 ORTHO05D010334 4.3e-11 70.9 38 81.6
TAR633G0052 Trochodendron aralioides HOM05D008199 ORTHO05D010334 5.6e-11 70.5 39 74.4
Carub.0004s2158 Capsella rubella HOM05D008199 ORTHO05D010334 7.3e-11 70.1 43 67.4
DCAR_027672 Daucus carota HOM05D008199 ORTHO05D010334 7.3e-11 70.1 41 73.2
Glyma.20G099000 Glycine max HOM05D008199 ORTHO05D010334 7.3e-11 70.1 38 78.9
Aqoxy5G00469 Aquilegia oxysepala HOM05D008199 ORTHO05D010334 2.8e-10 68.2 39 76.9
Migut.F01496 Erythranthe guttata HOM05D008199 ORTHO05D010334 3.6e-10 67.8 43 69.8
Phvul.007G011200 Phaseolus vulgaris HOM05D008199 ORTHO05D010334 3.6e-10 67.8 39 71.8
AL4G36900 Arabidopsis lyrata HOM05D008199 ORTHO05D010334 6.1e-10 67.0 40 67.5
AL4G36920 Arabidopsis lyrata HOM05D008199 ORTHO05D010334 6.1e-10 67.0 40 67.5
AT2G39500 Arabidopsis thaliana HOM05D008199 ORTHO05D010334 8.0e-10 66.6 40 65.0
Lalb_Chr02g0144051 Lupinus albus HOM05D008199 ORTHO05D010334 8.0e-10 66.6 36 77.8
PSO339G4122 Papaver somniferum HOM05D008199 ORTHO05D010334 2.3e-09 65.1 39 69.2
Zm00001eb362160 Zea mays HOM05D008199 ORTHO05D010334 2.3e-09 65.1 42 61.9
Duzib128G0439 Durio zibethinus HOM05D008199 ORTHO05D010334 3.1e-09 64.7 43 67.4
SEGI_29944 Sequoiadendron giganteum HOM05D008199 ORTHO05D010334 3.1e-09 64.7 53 50.9
MBI05_g35603_MAGBIO Magnolia biondii HOM05D008199 ORTHO05D010334 7.5e-08 60.1 36 63.9
SHI12594 Sapria himalayana HOM05D008199 ORTHO05D010334 2.2e-07 58.5 70 44.3


User provided reference genes

Program Settings