Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10033573m.g Citrus clementina HOM05D007408 ORTHO05D009325 5.6e-59 230.7 114 100.0
Atru.chr11.1432 Acer truncatum HOM05D007408 ORTHO05D009325 4.4e-24 114.8 115 60.0
TWI79G0837 Tripterygium wilfordii HOM05D007408 ORTHO05D009325 3.2e-22 108.6 117 54.7
Cpa.g.sc1.248 Carica papaya HOM05D007408 ORTHO05D009325 2.3e-20 102.4 110 53.6
Phvul.003G281600 Phaseolus vulgaris HOM05D007408 ORTHO05D009325 3.0e-20 102.1 111 49.5
Cc11_g10990 Coffea canephora HOM05D007408 ORTHO05D009325 5.1e-20 101.3 118 49.2
Potri.008G111500 Populus trichocarpa HOM05D007408 ORTHO05D009325 5.1e-20 101.3 117 53.0
PGR119G0146 Punica granatum HOM05D007408 ORTHO05D009325 5.1e-20 101.3 112 49.1
CiPaw.06G098200 Carya illinoinensis HOM05D007408 ORTHO05D009325 8.7e-20 100.5 115 52.2
Sabra08G0084200 Salix brachista HOM05D007408 ORTHO05D009325 8.7e-20 100.5 111 55.9
VMungo0251G2162 Vigna mungo HOM05D007408 ORTHO05D009325 8.7e-20 100.5 116 48.3
Manes.06G075900 Manihot esculenta HOM05D007408 ORTHO05D009325 1.1e-19 100.1 116 51.7
CANSAT64G2960 Cannabis sativa HOM05D007408 ORTHO05D009325 2.5e-19 99.0 125 47.2
Haze_11804 Corylus avellana HOM05D007408 ORTHO05D009325 7.3e-19 97.4 110 50.0
Gohir.D12G176300 Gossypium hirsutum HOM05D007408 ORTHO05D009325 1.3e-18 96.7 119 51.3
Gorai.008G188700 Gossypium raimondii HOM05D007408 ORTHO05D009325 1.3e-18 96.7 119 51.3
Manes.14G095101 Manihot esculenta HOM05D007408 ORTHO05D009325 1.3e-18 96.7 77 63.6
MD13G1050800 Malus domestica HOM05D007408 ORTHO05D009325 1.6e-18 96.3 114 48.2
Glyma.16G099500 Glycine max HOM05D007408 ORTHO05D009325 2.8e-18 95.5 124 47.6
Gohir.A12G173800 Gossypium hirsutum HOM05D007408 ORTHO05D009325 3.6e-18 95.1 120 50.8
Eucgr.B03072 Eucalyptus grandis HOM05D007408 ORTHO05D009325 4.8e-18 94.7 113 45.1
RcHm_v2.0_Chr4g0436431 Rosa chinensis HOM05D007408 ORTHO05D009325 4.8e-18 94.7 110 50.0
Cfa008792 Carpinus fangiana HOM05D007408 ORTHO05D009325 6.2e-18 94.4 122 46.7
Lalb_Chr20g0122411 Lupinus albus HOM05D007408 ORTHO05D009325 8.1e-18 94.0 120 42.5
Thecc.02G364900 Theobroma cacao HOM05D007408 ORTHO05D009325 1.4e-17 93.2 115 47.0
Oeu024124.1 Olea europaea HOM05D007408 ORTHO05D009325 1.8e-17 92.8 113 43.4
DCAR_026703 Daucus carota HOM05D002818 ORTHO05D003244 9.0e-17 90.5 110 47.3
HanXRQChr15g0475971 Helianthus annuus HOM05D007408 ORTHO05D009325 1.2e-16 90.1 120 39.2
SGA_v2.0_scaffold36G14509 Striga asiatica HOM05D007408 ORTHO05D009325 1.5e-16 89.7 112 46.4
HanXRQChr17g0551421 Helianthus annuus HOM05D007408 ORTHO05D009325 2.0e-16 89.4 112 42.0
FAN07G2148 Fragaria x ananassa HOM05D000085 ORTHO05D000274 2.6e-16 89.0 110 46.4
FAN12G0389 Fragaria x ananassa HOM05D000085 ORTHO05D000274 2.6e-16 89.0 110 46.4
FAN17G1226 Fragaria x ananassa HOM05D000085 ORTHO05D000274 2.6e-16 89.0 110 46.4
FAN22G2286 Fragaria x ananassa HOM05D000227 ORTHO05D001491 4.5e-16 88.2 110 46.4
Lsat_1_v5_gn_3_60200 Lactuca sativa HOM05D007408 ORTHO05D009325 2.9e-15 85.5 110 40.0
Solyc05g010130.1 Solanum lycopersicum HOM05D007408 ORTHO05D009325 3.8e-15 85.1 110 47.3
Prupe.1G301300 Prunus persica HOM05D007408 ORTHO05D009325 6.4e-15 84.3 119 43.7
TAR629G0610 Trochodendron aralioides HOM05D007408 ORTHO05D009325 6.4e-15 84.3 111 45.0
Lj4g0027659 Lotus japonicus HOM05D007408 ORTHO05D009325 3.2e-14 82.0 116 44.0
Sc11g0002930 Simmondsia chinensis HOM05D007408 ORTHO05D009325 4.2e-14 81.6 111 45.0
A06p42710 Brassica napus HOM05D007408 ORTHO05D009325 7.1e-14 80.9 111 41.4
BraA06t27184Z Brassica rapa HOM05D007408 ORTHO05D009325 7.1e-14 80.9 111 41.4
Carub.0005s0338 Capsella rubella HOM05D007408 ORTHO05D009325 9.3e-14 80.5 111 42.3
BcaC06g33976 Brassica carinata HOM05D007408 ORTHO05D009325 1.2e-13 80.1 111 41.4
Sp2g14870 Schrenkiella parvula HOM05D007408 ORTHO05D009325 1.2e-13 80.1 111 41.4
arahy.Tifrunner.gnm1.ann1.24G1QJ Arachis hypogaea HOM05D007408 ORTHO05D009325 2.1e-13 79.3 59 59.3
BcaC06g31130 Brassica carinata HOM05D007408 ORTHO05D009325 2.7e-13 79.0 111 39.6
C07p34420 Brassica napus HOM05D007408 ORTHO05D009325 3.5e-13 78.6 111 40.5
BraA02t08410Z Brassica rapa HOM05D007408 ORTHO05D009325 4.6e-13 78.2 111 43.2
CsaV3_2G010890 Cucumis sativus L. HOM05D007408 ORTHO05D009325 4.6e-13 78.2 112 41.1
A02p33920 Brassica napus HOM05D007408 ORTHO05D009325 1.0e-12 77.0 111 42.3
AL5G14110 Arabidopsis lyrata HOM05D007408 ORTHO05D009325 1.3e-12 76.6 111 41.4
Ah.02g127260 Amaranthus hybridus HOM05D007408 ORTHO05D009325 1.8e-12 76.3 133 35.3
BolC7t43970H Brassica oleracea HOM05D007408 ORTHO05D009325 1.8e-12 76.3 109 40.4
THA.LOC104822179 Tarenaya hassleriana HOM05D007408 ORTHO05D009325 1.8e-12 76.3 109 39.4
AT3G25597 Arabidopsis thaliana HOM05D007408 ORTHO05D009325 3.0e-12 75.5 111 38.7
Thhalv10005058m.g Eutrema salsugineum HOM05D007408 ORTHO05D009325 3.0e-12 75.5 111 40.5
TPR.G24816 Trifolium pratense HOM05D007408 ORTHO05D009325 3.0e-12 75.5 114 38.6
THA.LOC104805235 Tarenaya hassleriana HOM05D007408 ORTHO05D009325 3.9e-12 75.1 111 44.1
BcaC03g17274 Brassica carinata HOM05D007408 ORTHO05D009325 5.1e-12 74.7 110 40.0
C02p52180 Brassica napus HOM05D007408 ORTHO05D009325 5.1e-12 74.7 110 40.0
BolC2t11303H Brassica oleracea HOM05D007408 ORTHO05D009325 5.1e-12 74.7 110 40.0
CARHR146570 Cardamine hirsuta HOM05D007408 ORTHO05D009325 5.1e-12 74.7 111 39.6
Migut.L01119 Erythranthe guttata HOM05D007408 ORTHO05D009325 6.7e-12 74.3 114 36.8
HanXRQChr12g0365241 Helianthus annuus HOM05D007408 ORTHO05D009325 6.7e-12 74.3 107 39.3
Medtr8g069910 Medicago truncatula HOM05D007408 ORTHO05D009325 1.1e-11 73.6 109 39.4
SalBow8G1270 Salvia bowleyana HOM05D007408 ORTHO05D009325 1.9e-11 72.8 110 41.8
SalBow8G3082 Salvia bowleyana HOM05D007408 ORTHO05D009325 1.9e-11 72.8 110 41.8
BcaB07g30265 Brassica carinata HOM05D007408 ORTHO05D009325 7.4e-11 70.9 111 40.5
Aqoxy3G03838 Aquilegia oxysepala HOM05D007408 ORTHO05D009325 1.3e-10 70.1 114 39.5
CARHR061510 Cardamine hirsuta HOM05D007408 ORTHO05D009325 1.3e-10 70.1 110 35.5
AL1G39610 Arabidopsis lyrata HOM05D007408 ORTHO05D009325 3.6e-10 68.6 113 37.2
Sed0018728 Sechium edule HOM05D007408 ORTHO05D009325 4.8e-10 68.2 112 37.5
A09p39710 Brassica napus HOM05D007408 ORTHO05D009325 4.0e-09 65.1 110 35.5
BraA09t39470Z Brassica rapa HOM05D007408 ORTHO05D009325 4.0e-09 65.1 110 35.5
AT1G68700 Arabidopsis thaliana HOM05D007408 ORTHO05D009325 9.0e-09 63.9 109 32.1
AT1G26140 Arabidopsis thaliana HOM05D007408 ORTHO05D009325 2.0e-08 62.8 110 31.8
BcaB03g15446 Brassica carinata HOM05D007408 ORTHO05D009325 2.6e-08 62.4 111 35.1
BcaB03g15828 Brassica carinata HOM05D007408 ORTHO05D009325 2.6e-08 62.4 109 33.0
BcaC08g46321 Brassica carinata HOM05D000085 ORTHO05D000274 4.5e-08 61.6 109 33.9
BolC6t39308H Brassica oleracea HOM05D000085 ORTHO05D000274 4.5e-08 61.6 109 33.9
C06p41170 Brassica napus HOM05D000085 ORTHO05D000274 5.8e-08 61.2 109 33.0
PSO782G1144 Papaver somniferum HOM05D007408 ORTHO05D009325 5.8e-08 61.2 110 37.3
A07p35100 Brassica napus HOM05D000085 ORTHO05D000274 9.9e-08 60.5 109 33.9
C03p72700 Brassica napus HOM05D007408 ORTHO05D009325 9.9e-08 60.5 106 35.8
BolC3t19568H Brassica oleracea HOM05D007408 ORTHO05D009325 9.9e-08 60.5 106 35.8
BraA07t31103Z Brassica rapa HOM05D000085 ORTHO05D000274 9.9e-08 60.5 109 33.9
A08p27160 Brassica napus HOM05D007408 ORTHO05D009325 2.2e-07 59.3 109 39.4
Carub.0001s2482 Capsella rubella HOM05D007408 ORTHO05D009325 2.2e-07 59.3 111 34.2
Sp5g23800 Schrenkiella parvula HOM05D007408 ORTHO05D009325 2.2e-07 59.3 109 31.2
BraA08t34661Z Brassica rapa HOM05D007408 ORTHO05D009325 2.9e-07 58.9 111 38.7
A07p31850 Brassica napus HOM05D007408 ORTHO05D009325 3.8e-07 58.5 109 33.0
Thhalv10009687m.g Eutrema salsugineum HOM05D007408 ORTHO05D009325 3.8e-07 58.5 106 35.8
BraA07t30814Z Brassica rapa HOM05D007408 ORTHO05D009325 6.4e-07 57.8 109 33.0
Psat4g113200 Pisum sativum HOM05D007408 ORTHO05D009325 6.4e-07 57.8 110 34.5
BcaC05g26429 Brassica carinata HOM05D007408 ORTHO05D009325 1.9e-06 56.2 109 34.9
C05p24760 Brassica napus HOM05D007408 ORTHO05D009325 1.9e-06 56.2 109 34.9
HPP92_003100 Vanilla planifolia HOM05D007408 ORTHO05D009325 1.9e-06 56.2 70 44.3
CARHR025780 Cardamine hirsuta HOM05D007408 ORTHO05D009325 2.4e-06 55.8 47 53.2
MELO3C020393.2 Cucumis melo HOM05D007408 ORTHO05D009325 5.5e-06 54.7 125 34.4
Carub.0002s1524 Capsella rubella HOM05D007408 ORTHO05D009325 7.1e-06 54.3 101 29.7
ECA246G0813 Erigeron canadensis HOM05D000085 ORTHO05D000274 7.1e-06 54.3 97 39.2
C06p37420 Brassica napus HOM05D007408 ORTHO05D009325 9.3e-06 53.9 109 31.2


User provided reference genes

Program Settings