Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10033572m.g Citrus clementina HOM05D004766 ORTHO05D006159 0.0e+00 1228.8 622 100.0
Atru.chr12.159 Acer truncatum HOM05D004766 ORTHO05D006159 3.0e-255 885.2 597 74.5
Manes.07G137600 Manihot esculenta HOM05D004766 ORTHO05D006159 3.4e-251 871.7 593 73.7
Dinv26060 Davidia involucrata HOM05D004766 ORTHO05D006159 1.3e-250 869.8 594 73.6
Potri.019G056200 Populus trichocarpa HOM05D004766 ORTHO05D006159 1.5e-246 856.3 596 73.5
QL08p064773 Quercus lobata HOM05D004766 ORTHO05D006159 5.6e-246 854.4 601 72.0
Cpa.g.sc19.83 Carica papaya HOM05D004766 ORTHO05D006159 9.5e-246 853.6 595 72.1
Dinv21831 Davidia involucrata HOM05D004766 ORTHO05D006159 1.2e-245 853.2 595 71.9
Gohir.A13G007600 Gossypium hirsutum HOM05D004766 ORTHO05D006159 1.2e-245 853.2 594 70.7
Gohir.D13G007700 Gossypium hirsutum HOM05D004766 ORTHO05D006159 4.0e-244 848.2 594 70.2
Thecc.10G183900 Theobroma cacao HOM05D004766 ORTHO05D006159 8.9e-244 847.0 597 71.9
Gorai.013G008100 Gossypium raimondii HOM05D004766 ORTHO05D006159 1.5e-243 846.3 594 69.9
Sabra19G0071700 Salix brachista HOM05D004766 ORTHO05D006159 4.9e-242 841.3 596 71.6
MD07G1233000 Malus domestica HOM05D004766 ORTHO05D006159 7.1e-241 837.4 594 70.7
TWI09G0270 Tripterygium wilfordii HOM05D004766 ORTHO05D006159 7.1e-241 837.4 596 71.8
Duzib128G1614 Durio zibethinus HOM05D004766 ORTHO05D006159 1.6e-240 836.3 598 69.9
Haze_17351 Corylus avellana HOM05D004766 ORTHO05D006159 8.6e-239 830.5 622 69.3
RcHm_v2.0_Chr1g0372121 Rosa chinensis HOM05D004766 ORTHO05D006159 4.3e-238 828.2 593 70.0
FvH4_7g25850 Fragaria vesca HOM05D004766 ORTHO05D006159 9.6e-238 827.0 593 70.5
CiPaw.01G306100 Carya illinoinensis HOM05D004766 ORTHO05D006159 4.7e-237 824.7 597 70.0
FAN06G4224 Fragaria x ananassa HOM05D004766 ORTHO05D006159 1.1e-236 823.5 593 70.3
FAN10G2197 Fragaria x ananassa HOM05D004766 ORTHO05D006159 1.5e-235 819.7 593 69.8
TAR633G2654 Trochodendron aralioides HOM05D004766 ORTHO05D006159 3.8e-234 815.1 639 66.2
FAN03G3241 Fragaria x ananassa HOM05D004766 ORTHO05D006159 6.4e-234 814.3 592 69.1
Lj8C56T7 Lonicera japonica HOM05D004766 ORTHO05D006159 1.1e-233 813.5 596 68.6
Cc02_g05520 Coffea canephora HOM05D004766 ORTHO05D006159 2.1e-232 809.3 593 68.0
GSVIVG01032703001 Vitis vinifera HOM05D004766 ORTHO05D006159 2.1e-232 809.3 599 69.9
Ca_16870_v3 Cicer arietinum L. HOM05D004766 ORTHO05D006159 6.0e-232 807.7 596 68.0
Prupe.2G263500 Prunus persica HOM05D004766 ORTHO05D006159 1.7e-231 806.2 594 69.0
PGR142G0390 Punica granatum HOM05D004766 ORTHO05D006159 6.6e-231 804.3 595 67.6
EL10Ac2g04254 Beta vulgaris HOM05D004766 ORTHO05D006159 1.6e-229 799.7 593 66.3
vmacro09973 Vaccinium macrocarpon HOM05D004766 ORTHO05D006159 4.8e-229 798.1 635 64.7
CSS0019433 Camellia sinensis var. sinensis HOM05D004766 ORTHO05D006159 2.4e-228 795.8 671 62.7
MELO3C020001.2 Cucumis melo HOM05D004766 ORTHO05D006159 1.5e-227 793.1 609 66.0
CsaV3_6G002240 Cucumis sativus L. HOM05D004766 ORTHO05D006159 2.6e-227 792.3 594 67.3
CANSAT56G1075 Cannabis sativa HOM05D004766 ORTHO05D006159 3.4e-227 792.0 594 67.7
Nn2g10346 Nelumbo nucifera HOM05D004766 ORTHO05D006159 3.8e-226 788.5 597 65.2
Oeu054426.2 Olea europaea HOM05D004766 ORTHO05D006159 6.4e-226 787.7 666 61.1
Actinidia29749 Actinidia chinensis HOM05D004766 ORTHO05D006159 1.1e-225 786.9 594 66.8
MSTRG.178 Avicennia marina HOM05D004766 ORTHO05D006159 7.1e-225 784.3 606 65.5
Migut.F01258 Erythranthe guttata HOM05D004766 ORTHO05D006159 1.2e-224 783.5 592 66.9
THA.LOC104812375 Tarenaya hassleriana HOM05D004766 ORTHO05D006159 1.2e-224 783.5 614 65.1
arahy.Tifrunner.gnm1.ann1.4BS23W Arachis hypogaea HOM05D004766 ORTHO05D006159 2.7e-224 782.3 594 66.5
arahy.Tifrunner.gnm1.ann1.GHXG56 Arachis hypogaea HOM05D004766 ORTHO05D006159 3.5e-224 781.9 594 66.5
Eucgr.J00130 Eucalyptus grandis HOM05D004766 ORTHO05D006159 7.9e-224 780.8 593 68.0
Rhsim09G0184400 Rhododendron simsii HOM05D004766 ORTHO05D006159 1.0e-223 780.4 597 66.3
Glyma.04G222000 Glycine max HOM05D004766 ORTHO05D006159 2.3e-223 779.2 594 66.5
Glyma.06G143400 Glycine max HOM05D004766 ORTHO05D006159 6.7e-223 777.7 592 66.4
CAN.G169.5 Capsicum annuum HOM05D004766 ORTHO05D006159 2.5e-222 775.8 596 65.1
SGA_v2.0_scaffold275G46605 Striga asiatica HOM05D004766 ORTHO05D006159 4.3e-222 775.0 607 64.9
Hund13464 Selenicereus undatus HOM05D004766 ORTHO05D006159 5.6e-222 774.6 593 65.6
Ah.16g104280 Amaranthus hybridus HOM05D004766 ORTHO05D006159 9.6e-222 773.9 593 64.4
Nitab4.5_0000109g0520 Nicotiana tabacum HOM05D004766 ORTHO05D006159 1.3e-221 773.5 598 65.1
ECA233G3027 Erigeron canadensis HOM05D004766 ORTHO05D006159 1.4e-220 770.0 594 65.3
Nn5g26881 Nelumbo nucifera HOM05D004766 ORTHO05D006159 3.1e-220 768.8 603 63.8
Nitab4.5_0003695g0010 Nicotiana tabacum HOM05D004766 ORTHO05D006159 3.1e-220 768.8 596 64.8
Sed0017451 Sechium edule HOM05D004766 ORTHO05D006159 6.9e-220 767.7 592 66.6
TPR.G16138 Trifolium pratense HOM05D004766 ORTHO05D006159 6.9e-220 767.7 616 64.4
Actinidia31615 Actinidia chinensis HOM05D004766 ORTHO05D006159 9.0e-220 767.3 594 65.8
HanXRQChr08g0222571 Helianthus annuus HOM05D004766 ORTHO05D006159 3.4e-219 765.4 592 64.9
HanXRQChr17g0560771 Helianthus annuus HOM05D004766 ORTHO05D006159 5.8e-219 764.6 592 65.2
VMungo1309G2839 Vigna mungo HOM05D004766 ORTHO05D006159 5.8e-219 764.6 623 63.2
Medtr3g094070 Medicago truncatula HOM05D004766 ORTHO05D006159 7.6e-219 764.2 596 65.1
Phvul.009G142700 Phaseolus vulgaris HOM05D004766 ORTHO05D006159 6.4e-218 761.1 594 65.2
PGSC0003DMG400024309 Solanum tuberosum HOM05D004766 ORTHO05D006159 4.2e-217 758.4 596 64.6
Lalb_Chr11g0067831 Lupinus albus HOM05D004766 ORTHO05D006159 5.5e-217 758.1 599 65.8
Psat5g069120 Pisum sativum HOM05D004766 ORTHO05D006159 3.9e-215 751.9 598 64.2
AUR62031489 Chenopodium quinoa HOM05D004766 ORTHO05D006159 1.5e-214 750.0 594 64.1
ClCG11G005730 Citrullus lanatus HOM05D004766 ORTHO05D006159 1.3e-213 746.9 556 67.1
MBI15_g35105_MAGBIO Magnolia biondii HOM05D004766 ORTHO05D006159 1.4e-212 743.4 612 62.7
THA.LOC104803295 Tarenaya hassleriana HOM05D004766 ORTHO05D006159 1.5e-211 740.0 597 64.3
BcaC02g07319 Brassica carinata HOM05D004766 ORTHO05D006159 3.4e-211 738.8 596 62.4
AL4G38400 Arabidopsis lyrata HOM05D004766 ORTHO05D006159 7.6e-211 737.6 595 63.4
Aa31LG10G11180 Aethionema arabicum HOM05D004766 ORTHO05D006159 1.3e-210 736.9 595 63.9
CARHR135660 Cardamine hirsuta HOM05D004766 ORTHO05D006159 2.2e-210 736.1 598 62.9
AT2G40550 Arabidopsis thaliana HOM05D004766 ORTHO05D006159 3.8e-210 735.3 595 63.4
Thhalv10016414m.g Eutrema salsugineum HOM05D004766 ORTHO05D006159 6.5e-210 734.6 596 63.1
Lsat_1_v5_gn_8_13521 Lactuca sativa HOM05D004766 ORTHO05D006159 5.5e-209 731.5 594 63.6
Hma1.2p1_2838F.1_g329290 Hydrangea macrophylla HOM05D004766 ORTHO05D006159 9.3e-209 730.7 534 67.6
AUR62012360 Chenopodium quinoa HOM05D004766 ORTHO05D006159 2.1e-208 729.6 592 62.2
Lalb_Chr08g0239111 Lupinus albus HOM05D004766 ORTHO05D006159 1.3e-207 726.9 602 63.8
Sp4g22880 Schrenkiella parvula HOM05D004766 ORTHO05D006159 1.3e-207 726.9 596 62.1
SpUn0061_0030 Schrenkiella parvula HOM05D004766 ORTHO05D006159 1.3e-207 726.9 596 62.1
Carub.0004s2277 Capsella rubella HOM05D004766 ORTHO05D006159 3.9e-207 725.3 595 62.2
SalBow5G3937 Salvia bowleyana HOM05D004766 ORTHO05D006159 1.1e-206 723.8 632 59.5
BcaB06g29150 Brassica carinata HOM05D004766 ORTHO05D006159 2.5e-206 722.6 596 60.7
DCAR_010519 Daucus carota HOM05D004766 ORTHO05D006159 2.5e-206 722.6 595 63.0
PSO384G4442 Papaver somniferum HOM05D004766 ORTHO05D006159 2.5e-206 722.6 604 61.3
PSO339G1431 Papaver somniferum HOM05D004766 ORTHO05D006159 5.7e-206 721.5 604 60.9
Sc10g0002920 Simmondsia chinensis HOM05D004766 ORTHO05D006159 5.3e-204 714.9 557 63.7
FAN01G2723 Fragaria x ananassa HOM05D004766 ORTHO05D006159 2.2e-202 709.5 554 65.0
Aqoxy4G02363 Aquilegia oxysepala HOM05D004766 ORTHO05D006159 1.1e-201 707.2 593 60.0
Cfa001212 Carpinus fangiana HOM05D004766 ORTHO05D006159 2.7e-200 702.6 504 71.4
Lj1g0018162 Lotus japonicus HOM05D004766 ORTHO05D006159 7.9e-200 701.0 593 61.6
A04p31000 Brassica napus HOM05D004766 ORTHO05D006159 4.8e-197 691.8 594 59.8
Actinidia33880 Actinidia chinensis HOM05D004766 ORTHO05D006159 2.4e-196 689.5 576 62.2
C04p68390 Brassica napus HOM05D004766 ORTHO05D006159 2.4e-196 689.5 594 59.3
ATR0681G084 Amborella trichopoda HOM05D004766 ORTHO05D006159 4.5e-179 632.1 594 54.4
Os01g0166800 Oryza sativa ssp. japonica HOM05D004766 ORTHO05D006159 2.5e-177 626.3 604 53.8
Zm00001eb123270 Zea mays HOM05D004766 ORTHO05D006159 2.7e-171 606.3 602 53.0
HPP92_018094 Vanilla planifolia HOM05D004766 ORTHO05D006159 3.2e-169 599.4 600 54.0
MD01G1166300 Malus domestica HOM05D004766 ORTHO05D006159 4.2e-169 599.0 446 69.1
BolC4t28340H Brassica oleracea HOM05D000154 ORTHO05D000092 5.5e-169 598.6 525 59.4
BraA04t18557Z Brassica rapa HOM05D000154 ORTHO05D000092 2.7e-168 596.3 525 59.4
COL.COLO4_19454 Corchorus olitorius HOM05D004766 ORTHO05D006159 2.3e-167 593.2 463 65.4
CDE12G0671 Ceratophyllum demersum HOM05D004766 ORTHO05D006159 3.4e-166 589.3 592 53.0
Hma1.2p1_2838F.1_g329300 Hydrangea macrophylla HOM05D004766 ORTHO05D006159 1.6e-163 580.5 416 70.9
unitig_90.g27573 Utricularia gibba HOM05D004766 ORTHO05D006159 3.2e-161 572.8 624 50.5
Sopen06g015640 Solanum pennellii HOM05D000002 ORTHO05D000001 4.0e-159 565.8 522 57.3
C04p02090 Brassica napus HOM05D004766 ORTHO05D006159 2.8e-157 559.7 549 56.3
SEGI_19414 Sequoiadendron giganteum HOM05D004766 ORTHO05D006159 3.1e-156 556.2 599 47.4
SHI28878 Sapria himalayana HOM05D004766 ORTHO05D006159 1.4e-132 477.6 397 61.0
Pp3c21_8640 Physcomitrium patens HOM05D004766 ORTHO05D006159 2.4e-127 460.3 609 42.0
TAR636G0335 Trochodendron aralioides HOM05D004766 ORTHO05D006159 4.4e-118 429.5 279 77.8
AagrBONN_evm.TU.Sc2ySwM_228.256 Anthoceros agrestis HOM05D004766 ORTHO05D006159 8.4e-117 425.2 579 43.7
SMO347G0133 Selaginella moellendorffii HOM05D004766 ORTHO05D006159 4.6e-115 419.5 597 41.0
Mapoly0030s0020 Marchantia polymorpha HOM05D004766 ORTHO05D006159 3.5e-107 393.3 611 37.5
TAR636G1150 Trochodendron aralioides HOM05D004766 ORTHO05D006159 1.9e-105 387.5 304 63.5
SMO347G0333 Selaginella moellendorffii HOM05D004766 ORTHO05D006159 3.3e-105 386.7 595 39.8
MD01G1183300 Malus domestica HOM05D004766 ORTHO05D006159 1.8e-103 380.9 409 54.0
Dinv21784 Davidia involucrata HOM05D004766 ORTHO05D006159 2.4e-100 370.5 284 66.5
Peaxi162Scf00739g00014 Petunia axillaris HOM05D004766 ORTHO05D006159 1.8e-98 364.4 249 71.1
CBR_g29836 Chara braunii HOM05D004766 ORTHO05D006159 3.1e-95 353.6 627 36.7
BcaC02g12723 Brassica carinata HOM05D000154 ORTHO05D000092 2.6e-86 323.9 465 45.2
MCO09G187 Micromonas commoda HOM05D004766 ORTHO05D006159 1.8e-74 284.6 615 31.7
Solyc06g050200.2 Solanum lycopersicum HOM05D004766 ORTHO05D006159 1.1e-73 282.0 250 58.8
SalBow5G1700 Salvia bowleyana HOM05D004766 ORTHO05D006159 9.1e-71 272.3 426 40.8
Peaxi162Scf00739g00019 Petunia axillaris HOM05D004766 ORTHO05D006159 3.1e-63 247.3 283 48.4
MD01G1166000 Malus domestica HOM05D004766 ORTHO05D006159 1.6e-59 235.0 131 79.4
BcaC02g12598 Brassica carinata HOM05D004766 ORTHO05D006159 3.7e-56 223.8 167 68.9
CSS0047727 Camellia sinensis var. sinensis HOM05D004766 ORTHO05D006159 8.2e-56 222.6 287 46.0
HanXRQChr02g0033011 Helianthus annuus HOM05D004766 ORTHO05D006159 3.7e-48 197.2 143 61.5
Solyc06g050180.3 Solanum lycopersicum HOM05D004766 ORTHO05D006159 5.0e-45 186.8 288 41.3
PRCOL_00003324 Prasinoderma coloniale HOM05D004766 ORTHO05D006159 3.0e-42 177.6 599 27.4
BolC4t21721H Brassica oleracea HOM05D004766 ORTHO05D006159 3.7e-40 170.6 134 63.4
A05p01790 Brassica napus HOM05D004766 ORTHO05D006159 4.9e-40 170.2 128 68.8
BolC4t21857H Brassica oleracea HOM05D000154 ORTHO05D000092 1.4e-39 168.7 388 33.8
BraA05t19176Z Brassica rapa HOM05D004766 ORTHO05D006159 3.1e-34 151.0 116 67.2
HanXRQChr03g0064211 Helianthus annuus HOM05D004766 ORTHO05D006159 1.4e-31 142.1 94 68.1
AagrBONN_evm.TU.Sc2ySwM_228.73 Anthoceros agrestis HOM05D004766 ORTHO05D006159 4.3e-28 130.6 141 43.3
SHI28879 Sapria himalayana HOM05D004766 ORTHO05D006159 4.0e-26 124.0 190 38.9
Nn1g07504 Nelumbo nucifera HOM05D004766 ORTHO05D006159 4.1e-23 114.0 84 67.9
Cre01.g030150 Chlamydomonas reinhardtii HOM05D004766 ORTHO05D006159 3.5e-22 110.9 900 22.1
MBI11_g31297_MAGBIO Magnolia biondii HOM05D004766 ORTHO05D000022 1.1e-18 99.4 75 64.0
HanXRQChr15g0483741 Helianthus annuus HOM05D004766 ORTHO05D006159 1.3e-16 92.4 56 69.6
AagrBONN_evm.TU.Sc2ySwM_336.9 Anthoceros agrestis HOM05D004766 ORTHO05D006159 9.2e-15 86.3 88 45.5
BcaC04g23924 Brassica carinata HOM05D004766 ORTHO05D039973 6.6e-13 80.1 42 85.7
A06p41130 Brassica napus HOM05D000061 ORTHO05D000050 6.6e-13 80.1 42 85.7
C07p45160 Brassica napus HOM05D004766 ORTHO05D033383 8.6e-13 79.7 109 45.0
C09p32190 Brassica napus HOM05D004766 ORTHO05D008768 8.6e-13 79.7 109 45.0
BraA06t27036Z Brassica rapa HOM05D000061 ORTHO05D000050 3.3e-12 77.8 41 85.4
BolC1t04291H Brassica oleracea HOM05D004766 ORTHO05D008768 5.6e-12 77.0 41 85.4
Peaxi162Scf00041g01211 Petunia axillaris HOM05D004766 ORTHO05D006159 8.1e-11 73.2 108 39.8
SHI28880 Sapria himalayana HOM05D004766 ORTHO05D006159 6.8e-10 70.1 57 57.9
COL.COLO4_19455 Corchorus olitorius HOM05D004766 ORTHO05D006159 2.1e-06 58.5 35 82.9


User provided reference genes

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