Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10033483m.g Citrus clementina HOM05D003242 ORTHO05D003593 1.0e-60 236.5 115 100.0
Ciclev10033375m.g Citrus clementina HOM05D003242 ORTHO05D003593 2.4e-38 162.2 112 75.0
Atru.chr12.524 Acer truncatum HOM05D003242 ORTHO05D003593 9.3e-22 107.1 111 57.7
Atru.chr12.549 Acer truncatum HOM05D003242 ORTHO05D003593 2.1e-21 105.9 110 56.4
Duzib114G0229 Durio zibethinus HOM05D003242 ORTHO05D003593 1.9e-19 99.4 110 49.1
Thecc.10G050300 Theobroma cacao HOM05D003242 ORTHO05D003593 1.3e-18 96.7 111 47.7
Thecc.10G048800 Theobroma cacao HOM05D003242 ORTHO05D003593 2.8e-18 95.5 110 43.6
Thecc.10G048900 Theobroma cacao HOM05D003242 ORTHO05D003593 3.1e-17 92.0 108 45.4
Thecc.10G050400 Theobroma cacao HOM05D003242 ORTHO05D003593 4.1e-17 91.7 107 49.5
Duzib114G0726 Durio zibethinus HOM05D003242 ORTHO05D003593 5.9e-16 87.8 111 44.1
Thecc.10G050500 Theobroma cacao HOM05D003242 ORTHO05D003593 7.7e-16 87.4 107 50.5
Duzib114G0412 Durio zibethinus HOM05D003242 ORTHO05D003593 1.0e-15 87.0 102 45.1
Haze_17017 Corylus avellana HOM05D003242 ORTHO05D003593 1.7e-15 86.3 109 43.1
Cfa001524 Carpinus fangiana HOM05D003242 ORTHO05D003593 1.4e-14 83.2 110 41.8
COL.COLO4_14932 Corchorus olitorius HOM05D003242 ORTHO05D003593 1.9e-14 82.8 98 45.9
Thecc.10G045400 Theobroma cacao HOM05D003242 ORTHO05D003593 1.9e-14 82.8 101 42.6
Duzib128G0244 Durio zibethinus HOM05D003242 ORTHO05D003593 3.2e-14 82.0 107 44.9
Duzib114G0233 Durio zibethinus HOM05D003242 ORTHO05D003593 2.1e-13 79.3 105 42.9
QL08p058711 Quercus lobata HOM05D003242 ORTHO05D003593 2.1e-13 79.3 111 44.1
Dinv31419 Davidia involucrata HOM05D003242 ORTHO05D003593 4.6e-13 78.2 110 46.4
ClCG09G020160 Citrullus lanatus HOM05D003242 ORTHO05D003593 7.9e-13 77.4 105 41.9
Cpa.g.sc1.352 Carica papaya HOM05D003242 ORTHO05D003593 3.9e-12 75.1 115 40.9
COL.COLO4_14938 Corchorus olitorius HOM05D003242 ORTHO05D003593 6.7e-12 74.3 108 41.7
COL.COLO4_14928 Corchorus olitorius HOM05D003242 ORTHO05D003593 8.8e-12 73.9 93 46.2
Potri.008G050800 Populus trichocarpa HOM05D003242 ORTHO05D003593 1.5e-11 73.2 104 42.3
Lj1g0019421 Lotus japonicus HOM05D003242 ORTHO05D003593 2.5e-11 72.4 111 40.5
COL.COLO4_14924 Corchorus olitorius HOM05D003242 ORTHO05D003593 4.3e-11 71.6 99 41.4
Gohir.D05G300700 Gossypium hirsutum HOM05D003242 ORTHO05D003593 4.3e-11 71.6 114 37.7
Gorai.009G318700 Gossypium raimondii HOM05D003242 ORTHO05D003593 4.3e-11 71.6 114 37.7
Lj1g0018411 Lotus japonicus HOM05D003242 ORTHO05D003593 4.3e-11 71.6 111 39.6
CiPaw.01G282600 Carya illinoinensis HOM05D003242 ORTHO05D003593 5.7e-11 71.2 107 41.1
Thecc.10G051900 Theobroma cacao HOM05D003242 ORTHO05D003593 5.7e-11 71.2 109 39.4
MELO3C025465.2 Cucumis melo HOM05D003242 ORTHO05D003593 7.4e-11 70.9 105 39.0
Gorai.009G318100 Gossypium raimondii HOM05D003242 ORTHO05D003593 7.4e-11 70.9 111 40.5
Sabra08G0035600 Salix brachista HOM05D003242 ORTHO05D003593 9.7e-11 70.5 101 42.6
Ciclev10033934m.g Citrus clementina HOM05D003242 ORTHO05D003593 1.7e-10 69.7 105 41.0
COL.COLO4_14929 Corchorus olitorius HOM05D003242 ORTHO05D003593 1.7e-10 69.7 115 40.9
Duzib114G0414 Durio zibethinus HOM05D003242 ORTHO05D003593 1.7e-10 69.7 104 40.4
Thecc.10G045500 Theobroma cacao HOM05D003242 ORTHO05D003593 2.2e-10 69.3 106 40.6
Gohir.A05G300600 Gossypium hirsutum HOM05D003242 ORTHO05D003593 2.8e-10 68.9 111 39.6
Gohir.A05G301000 Gossypium hirsutum HOM05D003242 ORTHO05D003593 2.8e-10 68.9 114 36.8
Gohir.A10G213700 Gossypium hirsutum HOM05D003242 ORTHO05D003593 2.8e-10 68.9 99 40.4
Manes.10G035100 Manihot esculenta HOM05D003242 ORTHO05D003593 2.8e-10 68.9 104 41.3
Lj1g0028035 Lotus japonicus HOM05D003242 ORTHO05D003593 3.7e-10 68.6 106 40.6
VMungo1383G3113 Vigna mungo HOM05D003242 ORTHO05D003593 3.7e-10 68.6 105 40.0
Gohir.D05G300366 Gossypium hirsutum HOM05D003242 ORTHO05D003593 4.8e-10 68.2 111 38.7
MD07G1191500 Malus domestica HOM05D003242 ORTHO05D003593 4.8e-10 68.2 102 42.2
Gohir.D05G300300 Gossypium hirsutum HOM05D003242 ORTHO05D003593 6.3e-10 67.8 114 35.1
Gohir.D10G222800 Gossypium hirsutum HOM05D003242 ORTHO05D003593 6.3e-10 67.8 99 40.4
Gorai.011G253200 Gossypium raimondii HOM05D003242 ORTHO05D003593 6.3e-10 67.8 99 40.4
Gorai.009G317800 Gossypium raimondii HOM05D003242 ORTHO05D003593 8.2e-10 67.4 114 35.1
Gohir.D05G300650 Gossypium hirsutum HOM05D003242 ORTHO05D003593 1.8e-09 66.2 118 36.4
Gorai.009G318500 Gossypium raimondii HOM05D003242 ORTHO05D003593 1.8e-09 66.2 118 36.4
FvH4_7g21530 Fragaria vesca HOM05D003242 ORTHO05D003593 3.1e-09 65.5 111 38.7
FAN06G1309 Fragaria x ananassa HOM05D003242 ORTHO05D003593 3.1e-09 65.5 111 38.7
FAN06G2116 Fragaria x ananassa HOM05D003242 ORTHO05D003593 3.1e-09 65.5 111 38.7
Thecc.10G045700 Theobroma cacao HOM05D003242 ORTHO05D003593 3.1e-09 65.5 101 39.6
FAN01G0554 Fragaria x ananassa HOM05D003242 ORTHO05D003593 5.3e-09 64.7 111 38.7
FAN10G1923 Fragaria x ananassa HOM05D003242 ORTHO05D003593 5.3e-09 64.7 111 38.7
Gohir.A10G213733 Gossypium hirsutum HOM05D003242 ORTHO05D003593 5.3e-09 64.7 79 43.0
Gorai.009G318800 Gossypium raimondii HOM05D003242 ORTHO05D003593 6.9e-09 64.3 115 34.8
MD01G1122000 Malus domestica HOM05D003242 ORTHO05D003593 6.9e-09 64.3 103 37.9
COL.COLO4_14934 Corchorus olitorius HOM05D003242 ORTHO05D003593 9.1e-09 63.9 109 38.5
ClCG07G003130 Citrullus lanatus HOM05D003242 ORTHO05D003593 1.2e-08 63.5 106 37.7
Duzib128G0419 Durio zibethinus HOM05D003242 ORTHO05D003593 1.2e-08 63.5 92 41.3
CsaV3_5G006860 Cucumis sativus L. HOM05D003242 ORTHO05D003593 1.5e-08 63.2 106 36.8
Gohir.D05G300800 Gossypium hirsutum HOM05D003242 ORTHO05D003593 1.5e-08 63.2 108 36.1
GSVIVG01016613001 Vitis vinifera HOM05D003242 ORTHO05D003593 2.0e-08 62.8 126 34.1
MELO3C034250.2 Cucumis melo HOM05D003242 ORTHO05D003593 2.6e-08 62.4 106 36.8
FAN03G2136 Fragaria x ananassa HOM05D003242 ORTHO05D003593 2.6e-08 62.4 110 37.3
Eucgr.A01228 Eucalyptus grandis HOM05D003242 ORTHO05D003593 4.5e-08 61.6 114 36.0
Gorai.009G318400 Gossypium raimondii HOM05D003242 ORTHO05D003593 4.5e-08 61.6 106 38.7
TWI63G1712 Tripterygium wilfordii HOM05D003242 ORTHO05D003593 4.5e-08 61.6 111 36.9
CsaV3_5G026300 Cucumis sativus L. HOM05D003242 ORTHO05D003593 5.9e-08 61.2 105 36.2
Glyma.18G286800 Glycine max HOM05D003242 ORTHO05D003593 5.9e-08 61.2 99 38.4
COL.COLO4_26963 Corchorus olitorius HOM05D003242 ORTHO05D003593 7.7e-08 60.8 107 38.3
Eucgr.A01227 Eucalyptus grandis HOM05D003242 ORTHO05D003593 7.7e-08 60.8 109 36.7
Gohir.A05G300900 Gossypium hirsutum HOM05D003242 ORTHO05D003593 7.7e-08 60.8 106 39.6
RcHm_v2.0_Chr1g0365841 Rosa chinensis HOM05D003242 ORTHO05D003593 7.7e-08 60.8 109 35.8
GSVIVG01016605001 Vitis vinifera HOM05D003242 ORTHO05D003593 7.7e-08 60.8 99 38.4
Dinv25974 Davidia involucrata HOM05D001198 ORTHO05D001599 1.0e-07 60.5 110 39.1
Atru.chr12.523 Acer truncatum HOM05D003242 ORTHO05D003593 1.3e-07 60.1 114 39.5
Glyma.02G094600 Glycine max HOM05D003242 ORTHO05D003593 1.3e-07 60.1 99 38.4
Gorai.009G318600 Gossypium raimondii HOM05D003242 ORTHO05D003593 1.7e-07 59.7 90 38.9
Phvul.008G014800 Phaseolus vulgaris HOM05D003242 ORTHO05D003593 2.2e-07 59.3 100 39.0
Lj5g0007270 Lotus japonicus HOM05D003242 ORTHO05D003593 2.9e-07 58.9 105 36.2
Sed0020522 Sechium edule HOM05D003242 ORTHO05D003593 2.9e-07 58.9 88 39.8
COL.COLO4_26932 Corchorus olitorius HOM05D003242 ORTHO05D003593 3.8e-07 58.5 94 35.1
CANSAT56G4138 Cannabis sativa HOM05D003242 ORTHO05D003593 5.0e-07 58.2 110 35.5
COL.COLO4_14935 Corchorus olitorius HOM05D003242 ORTHO05D003593 5.0e-07 58.2 84 39.3
Eucgr.A01226 Eucalyptus grandis HOM05D003242 ORTHO05D003593 5.0e-07 58.2 92 44.6
Gohir.A05G300566 Gossypium hirsutum HOM05D003242 ORTHO05D003593 5.0e-07 58.2 109 33.0
TAR369G0738 Trochodendron aralioides HOM05D003242 ORTHO05D003593 5.0e-07 58.2 76 42.1
GSVIVG01016608001 Vitis vinifera HOM05D003242 ORTHO05D003593 6.5e-07 57.8 52 57.7
Glyma.20G098700 Glycine max HOM05D003242 ORTHO05D003593 8.5e-07 57.4 102 36.3
Duzib114G0435 Durio zibethinus HOM05D003242 ORTHO05D003593 1.1e-06 57.0 85 37.6
Phvul.007G010900 Phaseolus vulgaris HOM05D003242 ORTHO05D003593 1.1e-06 57.0 102 35.3
GSVIVG01016609001 Vitis vinifera HOM05D003242 ORTHO05D003593 1.1e-06 57.0 115 36.5
GSVIVG01016606001 Vitis vinifera HOM05D003242 ORTHO05D003593 1.9e-06 56.2 61 49.2
CSS0004742 Camellia sinensis var. sinensis HOM05D003242 ORTHO05D003593 2.5e-06 55.8 95 35.8
Thecc.10G049000 Theobroma cacao HOM05D003242 ORTHO05D003593 2.5e-06 55.8 54 50.0
Dinv37215 Davidia involucrata HOM05D003242 ORTHO05D003593 3.2e-06 55.5 96 36.5
Medtr1g115400 Medicago truncatula HOM05D003242 ORTHO05D003593 7.2e-06 54.3 110 33.6
Medtr6g018660 Medicago truncatula HOM05D001243 ORTHO05D000843 7.2e-06 54.3 85 40.0
vmacro08675 Vaccinium macrocarpon HOM05D003242 ORTHO05D003593 7.2e-06 54.3 125 32.8
Duzib205G0139 Durio zibethinus HOM05D000576 ORTHO05D016849 9.4e-06 53.9 54 48.1
TAR623G0165 Trochodendron aralioides HOM05D003242 ORTHO05D003593 9.4e-06 53.9 112 32.1


User provided reference genes

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