Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10033435m.g Citrus clementina HOM05D005619 ORTHO05D006696 6.8e-93 344.0 171 100.0
Atru.chr12.29 Acer truncatum HOM05D005619 ORTHO05D006696 3.5e-81 305.1 171 86.5
Thecc.10G016900 Theobroma cacao HOM05D005619 ORTHO05D006696 2.7e-73 278.9 170 78.8
Cpa.g.sc19.176 Carica papaya HOM05D005619 ORTHO05D006696 2.5e-71 272.3 170 75.9
Duzib128G1619 Durio zibethinus HOM05D005619 ORTHO05D006696 3.3e-71 271.9 170 76.5
Duzib114G0170 Durio zibethinus HOM05D005619 ORTHO05D006696 1.2e-70 270.0 170 76.5
Gohir.A06G163800 Gossypium hirsutum HOM05D005619 ORTHO05D006696 3.6e-70 268.5 170 75.3
Gohir.D06G169500 Gossypium hirsutum HOM05D005619 ORTHO05D006696 3.6e-70 268.5 170 75.3
Gorai.010G198200 Gossypium raimondii HOM05D005619 ORTHO05D006696 3.6e-70 268.5 170 75.3
COL.COLO4_38547 Corchorus olitorius HOM05D005598 ORTHO05D006587 3.1e-69 265.4 170 76.5
THA.LOC104824313 Tarenaya hassleriana HOM05D005619 ORTHO05D006696 4.0e-69 265.0 166 74.7
TAR369G0168 Trochodendron aralioides HOM05D005619 ORTHO05D006696 1.5e-68 263.1 171 75.4
Nn2g11500 Nelumbo nucifera HOM05D005619 ORTHO05D006696 7.5e-68 260.8 171 71.3
Lj1g0018800 Lotus japonicus HOM05D005619 ORTHO05D006696 9.8e-68 260.4 171 71.3
Dinv16155 Davidia involucrata HOM05D005619 ORTHO05D006696 1.3e-67 260.0 172 73.8
Thhalv10017287m.g Eutrema salsugineum HOM05D005619 ORTHO05D006696 2.2e-67 259.2 166 73.5
CARHR135030 Cardamine hirsuta HOM05D005619 ORTHO05D006696 2.9e-67 258.8 166 74.1
AL5G36640 Arabidopsis lyrata HOM05D005619 ORTHO05D006696 3.7e-67 258.5 170 70.6
Manes.04G157300 Manihot esculenta HOM05D005619 ORTHO05D006696 3.7e-67 258.5 170 71.8
Psat5g128520 Pisum sativum HOM05D005619 ORTHO05D006696 3.7e-67 258.5 171 71.9
QL08p063145 Quercus lobata HOM05D005619 ORTHO05D006696 4.9e-67 258.1 167 73.1
Lj6g0025019 Lotus japonicus HOM05D005619 ORTHO05D006696 8.3e-67 257.3 171 71.3
Potri.010G189200 Populus trichocarpa HOM05D005619 ORTHO05D006696 8.3e-67 257.3 170 73.5
Sabra08G0050000 Salix brachista HOM05D005619 ORTHO05D006696 8.3e-67 257.3 170 72.4
AT1G19080 Arabidopsis thaliana HOM05D005619 ORTHO05D006696 1.1e-66 256.9 166 71.7
AT3G55490 Arabidopsis thaliana HOM05D005619 ORTHO05D006696 1.1e-66 256.9 166 71.7
VMungo1383G0062 Vigna mungo HOM05D005619 ORTHO05D006696 1.4e-66 256.5 170 70.0
GSVIVG01032822001 Vitis vinifera HOM05D005619 ORTHO05D006696 1.4e-66 256.5 172 73.3
Medtr3g070470 Medicago truncatula HOM05D005619 ORTHO05D006696 1.9e-66 256.1 172 72.1
CARHR165540 Cardamine hirsuta HOM05D005619 ORTHO05D006696 3.2e-66 255.4 166 71.7
Potri.008G068100 Populus trichocarpa HOM05D005619 ORTHO05D006696 9.2e-66 253.8 170 71.2
Sp4g22380 Schrenkiella parvula HOM05D005619 ORTHO05D006696 2.7e-65 252.3 165 70.9
MD01G1152600 Malus domestica HOM05D005619 ORTHO05D006696 3.5e-65 251.9 171 70.2
TWI53G0619 Tripterygium wilfordii HOM05D005619 ORTHO05D006696 3.5e-65 251.9 169 71.0
Carub.0005s2221 Capsella rubella HOM05D005619 ORTHO05D006696 4.6e-65 251.5 166 69.3
arahy.Tifrunner.gnm1.ann1.IDH5I9 Arachis hypogaea HOM05D005619 ORTHO05D006696 6.0e-65 251.1 171 69.6
CANSAT56G2799 Cannabis sativa HOM05D005619 ORTHO05D006696 6.0e-65 251.1 171 70.2
CsaV3_6G001830 Cucumis sativus L. HOM05D005619 ORTHO05D006696 7.8e-65 250.8 171 69.6
Phvul.001G242800 Phaseolus vulgaris HOM05D005619 ORTHO05D006696 7.8e-65 250.8 171 68.4
arahy.Tifrunner.gnm1.ann1.2YL4XG Arachis hypogaea HOM05D005619 ORTHO05D006696 1.0e-64 250.4 171 69.6
Aqoxy4G02564 Aquilegia oxysepala HOM05D005619 ORTHO05D006696 1.3e-64 250.0 172 68.6
BcaNung05464 Brassica carinata HOM05D005619 ORTHO05D006696 1.3e-64 250.0 165 73.3
A04p30090 Brassica napus HOM05D005619 ORTHO05D006696 1.7e-64 249.6 165 72.7
TPR.G16245 Trifolium pratense HOM05D005619 ORTHO05D006696 3.0e-64 248.8 177 68.4
Lalb_Chr03g0027081 Lupinus albus HOM05D005619 ORTHO05D006696 3.9e-64 248.4 170 69.4
BraA04t18498Z Brassica rapa HOM05D005619 ORTHO05D006696 8.6e-64 247.3 165 72.1
Sed0003089 Sechium edule HOM05D005619 ORTHO05D006696 1.1e-63 246.9 167 68.9
BcaC02g07392 Brassica carinata HOM05D005619 ORTHO05D006696 1.5e-63 246.5 165 72.7
COL.COLO4_25718 Corchorus olitorius HOM05D005619 ORTHO05D006696 1.5e-63 246.5 162 75.3
Prupe.2G202300 Prunus persica HOM05D005619 ORTHO05D006696 1.9e-63 246.1 166 69.9
RcHm_v2.0_Chr1g0370121 Rosa chinensis HOM05D005619 ORTHO05D006696 2.5e-63 245.7 171 69.6
FvH4_7g24440 Fragaria vesca HOM05D005619 ORTHO05D006696 3.3e-63 245.4 171 69.0
FAN01G2425 Fragaria x ananassa HOM05D005619 ORTHO05D006696 4.3e-63 245.0 171 69.0
Prupe.2G249700 Prunus persica HOM05D005619 ORTHO05D006696 4.3e-63 245.0 166 69.3
Lj3A878T24 Lonicera japonica HOM05D005619 ORTHO05D006696 5.6e-63 244.6 172 69.8
BolC4t28280H Brassica oleracea HOM05D005619 ORTHO05D006696 7.3e-63 244.2 165 71.5
FAN10G0566 Fragaria x ananassa HOM05D005619 ORTHO05D006696 7.3e-63 244.2 171 68.4
PSO339G2325 Papaver somniferum HOM05D005619 ORTHO05D006696 7.3e-63 244.2 168 70.2
Eucgr.G03057 Eucalyptus grandis HOM05D005619 ORTHO05D006696 9.5e-63 243.8 166 72.3
Hund13861 Selenicereus undatus HOM05D005619 ORTHO05D006696 1.2e-62 243.4 172 66.9
Glyma.18G027600 Glycine max HOM05D005619 ORTHO05D006696 1.6e-62 243.0 166 70.5
BcaC02g07350 Brassica carinata HOM05D005619 ORTHO05D006696 2.8e-62 242.3 165 71.5
C04p67770 Brassica napus HOM05D005619 ORTHO05D006696 2.8e-62 242.3 165 71.5
Aqoxy5G02842 Aquilegia oxysepala HOM05D005619 ORTHO05D006696 3.6e-62 241.9 172 66.3
Glyma.11G229600 Glycine max HOM05D005619 ORTHO05D006696 3.6e-62 241.9 166 69.9
MBI05_g05306_MAGBIO Magnolia biondii HOM05D005619 ORTHO05D006696 3.6e-62 241.9 169 68.0
Actinidia31994 Actinidia chinensis HOM05D005619 ORTHO05D006696 6.2e-62 241.1 172 68.6
CSS0006168 Camellia sinensis var. sinensis HOM05D005619 ORTHO05D006696 8.0e-62 240.7 172 69.2
ClCG11G006160 Citrullus lanatus HOM05D005619 ORTHO05D006696 1.1e-61 240.4 167 68.9
Cfa001322 Carpinus fangiana HOM05D005619 ORTHO05D006696 1.4e-61 240.0 167 70.1
Sc11g0001040 Simmondsia chinensis HOM05D005619 ORTHO05D006696 1.4e-61 240.0 169 68.0
Haze_17223 Corylus avellana HOM05D005619 ORTHO05D006696 1.8e-61 239.6 166 70.5
PGR142G0483 Punica granatum HOM05D005619 ORTHO05D006696 2.6e-60 235.7 166 67.5
CDE04G2394 Ceratophyllum demersum HOM05D005619 ORTHO05D006696 2.2e-59 232.6 168 66.1
CiPaw.02G192300 Carya illinoinensis HOM05D000781 ORTHO05D000643 2.9e-59 232.3 163 69.3
DCAR_026757 Daucus carota HOM05D005619 ORTHO05D006696 8.3e-59 230.7 172 65.1
CiPaw.08G091200 Carya illinoinensis HOM05D005619 ORTHO05D006696 1.1e-58 230.3 167 67.1
Hma1.2p1_2256F.1_g318210 Hydrangea macrophylla HOM05D005619 ORTHO05D006696 1.1e-58 230.3 170 65.9
HanXRQChr15g0468911 Helianthus annuus HOM05D005619 ORTHO05D006696 2.4e-58 229.2 169 63.9
Lalb_Chr01g0004131 Lupinus albus HOM05D005619 ORTHO05D006696 3.2e-58 228.8 191 59.7
AUR62034382 Chenopodium quinoa HOM05D005619 ORTHO05D006696 5.4e-58 228.0 171 65.5
HanXRQChr08g0213181 Helianthus annuus HOM05D005619 ORTHO05D006696 7.1e-58 227.6 169 63.3
AUR62022323 Chenopodium quinoa HOM05D005619 ORTHO05D006696 2.1e-57 226.1 171 65.5
ECA233G2873 Erigeron canadensis HOM05D005619 ORTHO05D006696 2.7e-57 225.7 169 62.7
EL10Ac2g04534 Beta vulgaris HOM05D005619 ORTHO05D006696 1.7e-56 223.0 172 62.8
Oeu057772.1 Olea europaea HOM05D005619 ORTHO05D006696 1.7e-56 223.0 171 65.5
Lsat_1_v5_gn_8_41961 Lactuca sativa HOM05D005619 ORTHO05D006696 3.0e-56 222.2 169 63.3
HanXRQChr09g0271791 Helianthus annuus HOM05D005619 ORTHO05D006696 1.1e-55 220.3 169 61.5
PGSC0003DMG400030566 Solanum tuberosum HOM05D005619 ORTHO05D006696 4.3e-55 218.4 174 62.6
Peaxi162Scf00451g00930 Petunia axillaris HOM05D005619 ORTHO05D006696 5.6e-55 218.0 174 61.5
ATR0481G004 Amborella trichopoda HOM05D005619 ORTHO05D006696 7.3e-55 217.6 170 62.9
MSTRG.870 Avicennia marina HOM05D005619 ORTHO05D006696 9.5e-55 217.2 171 64.3
Solyc05g008620.4 Solanum lycopersicum HOM05D005619 ORTHO05D006696 1.2e-54 216.9 174 62.1
Sopen05g004460 Solanum pennellii HOM05D005619 ORTHO05D006696 1.2e-54 216.9 174 62.1
CAN.G1489.22 Capsicum annuum HOM05D005619 ORTHO05D006696 1.6e-54 216.5 174 62.6
ECA247G2146 Erigeron canadensis HOM05D005619 ORTHO05D006696 2.1e-54 216.1 169 60.4
SalBow8G4625 Salvia bowleyana HOM05D005619 ORTHO05D006696 2.8e-54 215.7 171 63.2
Migut.E00386 Erythranthe guttata HOM05D005619 ORTHO05D006696 1.8e-53 213.0 171 62.0
unitig_52.g17125 Utricularia gibba HOM05D005619 ORTHO05D006696 3.1e-53 212.2 169 62.7
SGA_v2.0_scaffold170G38815 Striga asiatica HOM05D005619 ORTHO05D006696 5.2e-53 211.5 171 60.8
Zm00001eb412290 Zea mays HOM05D005619 ORTHO05D006696 8.9e-53 210.7 168 60.1
Os08g0274700 Oryza sativa ssp. japonica HOM05D005619 ORTHO05D006696 2.6e-52 209.1 168 61.9
Cc03_g10740 Coffea canephora HOM05D005619 ORTHO05D006696 9.9e-52 207.2 174 59.8
Peaxi162Scf00205g01136 Petunia axillaris HOM05D005619 ORTHO05D006696 6.4e-51 204.5 150 66.0
Zm00001eb198650 Zea mays HOM05D005619 ORTHO05D006696 6.4e-51 204.5 168 59.5
TAR633G2706 Trochodendron aralioides HOM05D005619 ORTHO05D006696 1.4e-50 203.4 135 71.9
HPP92_000422 Vanilla planifolia HOM05D000755 ORTHO05D006696 1.4e-50 203.4 168 59.5
HPP92_000355 Vanilla planifolia HOM05D000755 ORTHO05D000642 5.4e-50 201.4 168 58.9
Nitab4.5_0000350g0020 Nicotiana tabacum HOM05D005619 ORTHO05D006696 1.3e-48 196.8 173 60.1
TWI73G0774 Tripterygium wilfordii HOM05D005619 ORTHO05D006696 5.1e-48 194.9 167 58.7
SMO356G0622 Selaginella moellendorffii HOM05D005619 ORTHO05D006696 1.5e-47 193.4 168 54.8
C04p07340 Brassica napus HOM05D004515 ORTHO05D006013 8.9e-45 184.1 162 59.9
Sabra10G0145900 Salix brachista HOM05D005619 ORTHO05D006696 2.6e-44 182.6 170 58.8
FAN06G3728 Fragaria x ananassa HOM05D005619 ORTHO05D006696 3.4e-44 182.2 134 63.4
CSS0006460 Camellia sinensis var. sinensis HOM05D005619 ORTHO05D006696 8.4e-43 177.6 160 58.1
Pp3c25_12660 Physcomitrium patens HOM05D005619 ORTHO05D006696 8.4e-43 177.6 166 52.4
MELO3C029903.2 Cucumis melo HOM05D005619 ORTHO05D006696 1.4e-42 176.8 185 52.4
DCAR_023625 Daucus carota HOM05D005619 ORTHO05D006696 2.4e-42 176.0 133 60.9
SalBow8G2997 Salvia bowleyana HOM05D005619 ORTHO05D006696 4.2e-42 175.3 188 52.1
CARHR159370 Cardamine hirsuta HOM05D005619 ORTHO05D006696 1.6e-41 173.3 113 68.1
Mapoly0053s0030 Marchantia polymorpha HOM05D005619 ORTHO05D006696 1.3e-40 170.2 167 51.5
Mapoly0034s0059 Marchantia polymorpha HOM05D005619 ORTHO05D006696 1.1e-39 167.2 169 48.5
Cc03_g13530 Coffea canephora HOM05D005619 ORTHO05D006696 5.6e-39 164.9 150 58.0
AagrBONN_evm.TU.Sc2ySwM_228.5247 Anthoceros agrestis HOM05D005619 ORTHO05D006696 3.1e-37 159.1 171 47.4
AagrBONN_evm.TU.Sc2ySwM_344.729 Anthoceros agrestis HOM05D005619 ORTHO05D006696 4.0e-37 158.7 167 49.7
Nitab4.5_0003886g0110 Nicotiana tabacum HOM05D005619 ORTHO05D006696 9.0e-37 157.5 172 50.6
Aa31LG5G19540 Aethionema arabicum HOM05D005619 ORTHO05D006696 1.2e-33 147.1 87 75.9
CBR_g38120 Chara braunii HOM05D005619 ORTHO05D006696 2.1e-33 146.4 169 40.2
FAN06G2505 Fragaria x ananassa HOM05D005619 ORTHO05D006696 1.0e-32 144.1 134 54.5
BolC4t22357H Brassica oleracea HOM05D004515 ORTHO05D006013 5.6e-31 138.3 159 48.4
ATR0568G146 Amborella trichopoda HOM05D005619 ORTHO05D006696 5.3e-29 131.7 119 55.5
C04p07380 Brassica napus HOM05D005619 ORTHO05D006696 6.7e-24 114.8 127 49.6
Thecc.10G017600 Theobroma cacao HOM05D009631 ORTHO05D011824 1.7e-19 100.1 83 66.3
AagrBONN_evm.TU.Sc2ySwM_344.737 Anthoceros agrestis HOM05D005619 ORTHO05D006696 4.9e-19 98.6 88 55.7
Actinidia33632 Actinidia chinensis HOM05D005619 ORTHO05D006696 2.1e-17 93.2 79 62.0
MCO08G248 Micromonas commoda HOM05D005619 ORTHO05D006696 1.0e-16 90.9 151 31.8
HanXRQChr01g0017101 Helianthus annuus HOM05D005619 ORTHO05D006696 1.8e-16 90.1 62 64.5
Cre06.g251750 Chlamydomonas reinhardtii HOM05D005619 ORTHO05D006696 3.0e-16 89.4 170 31.2
BcaB08g35316 Brassica carinata HOM05D005619 ORTHO05D006696 3.3e-15 85.9 54 70.4
PRCOL_00002083 Prasinoderma coloniale HOM05D005619 ORTHO05D006696 1.4e-10 70.5 142 31.7
HanXRQChr12g0375531 Helianthus annuus HOM05D005619 ORTHO05D006696 5.1e-08 62.0 57 47.4


User provided reference genes

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