Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10033432m.g Citrus clementina HOM05D007552 ORTHO05D009397 1.2e-193 680.2 513 100.0
Ciclev10033582m.g Citrus clementina HOM05D007552 ORTHO05D009397 2.6e-180 636.0 513 96.9
Duzib128G1161 Durio zibethinus HOM05D007552 ORTHO05D009397 4.8e-102 375.9 469 68.0
Thecc.10G186400 Theobroma cacao HOM05D007552 ORTHO05D009397 2.4e-101 373.6 469 68.2
Manes.13G083600 Manihot esculenta HOM05D007552 ORTHO05D009397 2.9e-83 313.5 508 59.3
Duzib114G0042 Durio zibethinus HOM05D007552 ORTHO05D009397 1.4e-80 304.7 469 65.5
QL07p010391 Quercus lobata HOM05D007552 ORTHO05D009397 9.1e-77 292.0 467 70.7
COL.COLO4_19487 Corchorus olitorius HOM05D007552 ORTHO05D009397 1.7e-70 271.2 469 66.5
Haze_13567 Corylus avellana HOM05D007552 ORTHO05D009397 6.6e-67 259.2 469 62.7
CSS0020938 Camellia sinensis var. sinensis HOM05D007552 ORTHO05D009397 5.7e-63 246.1 469 63.5
Dinv11901 Davidia involucrata HOM05D007552 ORTHO05D009397 1.7e-62 244.6 469 64.8
Sed0018321 Sechium edule HOM05D007552 ORTHO05D009397 6.4e-62 242.7 471 63.1
GSVIVG01029542001 Vitis vinifera HOM05D007552 ORTHO05D009397 4.6e-60 236.5 470 63.4
Nitab4.5_0007324g0040 Nicotiana tabacum HOM05D007552 ORTHO05D009397 3.9e-59 233.4 475 53.7
Prupe.3G022400 Prunus persica HOM05D007552 ORTHO05D009397 1.4e-56 224.9 492 60.8
Gohir.A05G404600 Gossypium hirsutum HOM05D007552 ORTHO05D009397 3.1e-56 223.8 469 50.1
Actinidia38807 Actinidia chinensis HOM05D007552 ORTHO05D009397 4.0e-56 223.4 469 61.8
Sopen01g032250 Solanum pennellii HOM05D007552 ORTHO05D009397 5.2e-56 223.0 474 52.5
TWI75G0828 Tripterygium wilfordii HOM05D007552 ORTHO05D009397 6.8e-56 222.6 448 58.0
CAN.G889.11 Capsicum annuum HOM05D007552 ORTHO05D009397 1.5e-55 221.5 487 60.4
Peaxi162Scf00095g00416 Petunia axillaris HOM05D007552 ORTHO05D009397 4.4e-55 219.9 474 61.0
Solyc01g080450.4 Solanum lycopersicum HOM05D007552 ORTHO05D009397 7.5e-55 219.2 475 53.3
PGSC0003DMG400032099 Solanum tuberosum HOM05D007552 ORTHO05D009397 9.8e-55 218.8 475 60.4
TAR626G0934 Trochodendron aralioides HOM05D007552 ORTHO05D009397 1.3e-54 218.4 304 76.0
Gorai.012G013300 Gossypium raimondii HOM05D007552 ORTHO05D009397 4.9e-54 216.5 303 77.2
Hma1.2p1_0517F.1_g170780 Hydrangea macrophylla HOM05D007552 ORTHO05D009397 1.1e-53 215.3 304 71.4
CAN.G497.96 Capsicum annuum HOM05D007552 ORTHO05D009397 1.4e-53 214.9 490 32.7
Gohir.D04G011100 Gossypium hirsutum HOM05D007552 ORTHO05D009397 2.4e-53 214.2 303 76.2
MD09G1165000 Malus domestica HOM05D007552 ORTHO05D009397 7.0e-53 212.6 492 59.8
Sed0019272 Sechium edule HOM05D007552 ORTHO05D009397 2.7e-52 210.7 471 60.5
Actinidia35910 Actinidia chinensis HOM05D007552 ORTHO05D009397 4.6e-52 209.9 469 61.6
QL08p045079 Quercus lobata HOM05D007552 ORTHO05D009397 7.8e-52 209.1 303 79.5
Nitab4.5_0000059g0200 Nicotiana tabacum HOM05D007552 ORTHO05D009397 1.0e-51 208.8 476 60.7
Nitab4.5_0007324g0010 Nicotiana tabacum HOM05D007552 ORTHO05D009397 3.9e-51 206.8 475 59.6
QL93p2016_0066 Quercus lobata HOM05D007552 ORTHO05D009397 5.0e-51 206.5 304 78.9
Ca_25555_v3 Cicer arietinum L. HOM05D007552 ORTHO05D009397 6.6e-51 206.1 474 54.2
QL08p045116 Quercus lobata HOM05D007552 ORTHO05D009397 5.6e-50 203.0 300 79.3
Lj5P680T20 Lonicera japonica HOM05D007552 ORTHO05D009397 2.1e-49 201.1 312 72.8
CSS0021108 Camellia sinensis var. sinensis HOM05D007552 ORTHO05D009397 5.2e-48 196.4 261 41.0
Cpa.g.sc155.17 Carica papaya HOM05D007552 ORTHO05D009397 5.2e-48 196.4 221 52.5
CANSAT54G1473 Cannabis sativa HOM05D007552 ORTHO05D009397 6.8e-48 196.1 467 59.1
Ca_26412_v3 Cicer arietinum L. HOM05D007552 ORTHO05D009397 8.9e-48 195.7 473 50.5
Oeu058208.1 Olea europaea HOM05D007552 ORTHO05D009397 1.5e-47 194.9 450 53.1
SalBow3G0468 Salvia bowleyana HOM05D007552 ORTHO05D009397 2.6e-47 194.1 470 52.8
THA.LOC104812327 Tarenaya hassleriana HOM05D007552 ORTHO05D009397 6.4e-46 189.5 465 51.8
Eucgr.F04004 Eucalyptus grandis HOM05D007552 ORTHO05D009397 7.8e-44 182.6 300 67.0
SalBow3G2744 Salvia bowleyana HOM05D007552 ORTHO05D009397 7.8e-44 182.6 470 52.1
MSTRG.22501 Avicennia marina HOM05D007552 ORTHO05D009397 4.3e-42 176.8 320 56.2
Lalb_Chr03g0029771 Lupinus albus HOM05D007552 ORTHO05D009397 4.3e-42 176.8 466 59.9
MELO3C002831.2 Cucumis melo HOM05D007552 ORTHO05D009397 1.1e-40 172.2 341 64.8
CsaV3_1G037150 Cucumis sativus L. HOM05D007552 ORTHO05D009397 1.5e-39 168.3 468 58.3
Glyma.17G219900 Glycine max HOM05D007552 ORTHO05D009397 2.6e-39 167.5 478 51.5
Medtr7g025610 Medicago truncatula HOM05D007552 ORTHO05D009397 5.8e-39 166.4 461 38.6
PGR102G1581 Punica granatum HOM05D007552 ORTHO05D009397 2.9e-38 164.1 467 55.5
Rhsim08G0249900 Rhododendron simsii HOM05D007552 ORTHO05D009397 4.9e-38 163.3 304 70.1
TPR.G37558 Trifolium pratense HOM05D007552 ORTHO05D009397 8.4e-38 162.5 444 46.4
Psat3g178720 Pisum sativum HOM05D007552 ORTHO05D009397 3.5e-36 157.1 470 51.7
Cc02_g21230 Coffea canephora HOM05D007552 ORTHO05D009397 6.6e-35 152.9 297 65.7
Glyma.19G019400 Glycine max HOM05D007552 ORTHO05D009397 1.4e-32 145.2 478 47.5
Sc01g0005200 Simmondsia chinensis HOM05D007552 ORTHO05D009397 5.2e-32 143.3 304 65.1
Aa31LG7G1270 Aethionema arabicum HOM05D007552 ORTHO05D009397 4.4e-31 140.2 444 43.7
VMungo1080G1651 Vigna mungo HOM05D007552 ORTHO05D009397 1.7e-30 138.3 491 42.4
Migut.I01195 Erythranthe guttata HOM05D007552 ORTHO05D009397 6.4e-30 136.3 290 60.3
MBI04_g20974_MAGBIO Magnolia biondii HOM05D007552 ORTHO05D009397 1.9e-29 134.8 300 68.0
Thhalv10007086m.g Eutrema salsugineum HOM05D007552 ORTHO05D009397 3.0e-27 127.5 239 31.0
MD17G1163200 Malus domestica HOM05D007552 ORTHO05D009397 3.9e-27 127.1 264 46.2
Phvul.005G185300 Phaseolus vulgaris HOM05D007552 ORTHO05D009397 3.9e-27 127.1 478 49.2
AL1G29000 Arabidopsis lyrata HOM05D007552 ORTHO05D009397 5.1e-27 126.7 459 30.1
Sp1g14970 Schrenkiella parvula HOM05D007552 ORTHO05D009397 7.3e-26 122.9 245 29.4
MD17G1163100 Malus domestica HOM05D007552 ORTHO05D009397 2.8e-25 120.9 84 65.5
CARHR017300 Cardamine hirsuta HOM05D007552 ORTHO05D009397 3.6e-25 120.6 459 44.2
C05p15050 Brassica napus HOM05D007552 ORTHO05D009397 2.4e-24 117.9 259 27.0
A06p12740 Brassica napus HOM05D007552 ORTHO05D009397 5.3e-24 116.7 262 27.5
BraA06t24434Z Brassica rapa HOM05D007552 ORTHO05D009397 5.3e-24 116.7 262 27.5
vmacro06800 Vaccinium macrocarpon HOM05D007552 ORTHO05D009397 1.2e-23 115.5 469 54.4
ATR0776G035 Amborella trichopoda HOM05D007552 ORTHO05D009397 3.4e-23 114.0 300 64.3
BcaB02g06673 Brassica carinata HOM05D007552 ORTHO05D009397 4.5e-23 113.6 245 28.2
BcaC05g25539 Brassica carinata HOM05D007552 ORTHO05D009397 3.8e-22 110.5 238 27.3
BolC5t30220H Brassica oleracea HOM05D007552 ORTHO05D009397 3.8e-22 110.5 238 27.3
Lj5g0015623 Lotus japonicus HOM05D007552 ORTHO05D009397 1.9e-21 108.2 469 40.5
Carub.0001s1657 Capsella rubella HOM05D007552 ORTHO05D009397 1.6e-20 105.1 452 40.3
MD17G1163000 Malus domestica HOM05D007552 ORTHO05D009397 6.7e-19 99.8 208 46.6
TPR.G20566 Trifolium pratense HOM05D007552 ORTHO05D009397 2.5e-18 97.8 347 57.3
Nn1g09670 Nelumbo nucifera HOM05D007552 ORTHO05D009397 4.3e-18 97.1 84 54.8
TAR626G0440 Trochodendron aralioides HOM05D007552 ORTHO05D009397 4.3e-18 97.1 76 56.6
TAR362G0754 Trochodendron aralioides HOM05D007552 ORTHO05D009397 3.1e-16 90.9 64 57.8
Hund18597 Selenicereus undatus HOM05D007552 ORTHO05D009397 4.0e-16 90.5 79 45.6
Nitab4.5_0002731g0040 Nicotiana tabacum HOM05D007552 ORTHO05D009397 9.0e-16 89.4 475 21.3
AT1G16830 Arabidopsis thaliana HOM05D007552 ORTHO05D009397 1.3e-14 85.5 462 36.8
Actinidia21884 Actinidia chinensis HOM05D007552 ORTHO05D009397 2.2e-14 84.7 66 53.0
HPP92_024564 Vanilla planifolia HOM05D007552 ORTHO05D009397 5.5e-13 80.1 84 45.2
Lj6C66G1 Lonicera japonica HOM05D007552 ORTHO05D009397 6.0e-12 76.6 190 45.3
Os02g0321000 Oryza sativa ssp. japonica HOM05D017260 ORTHO05D014237 3.7e-09 67.4 139 27.3
Os10g0578500 Oryza sativa ssp. japonica HOM05D007552 ORTHO05D009397 2.4e-08 64.7 83 36.1
EL10Ac8g19997 Beta vulgaris HOM05D007956 ORTHO05D010152 3.1e-08 64.3 146 26.7
QL05p089319 Quercus lobata HOM05D005973 ORTHO05D007285 6.9e-08 63.2 126 26.2
CAN.G354.45 Capsicum annuum HOM05D007390 ORTHO05D009114 9.0e-08 62.8 104 34.6
Os11g0433101 Oryza sativa ssp. japonica HOM05D000001 ORTHO05D009834 9.0e-08 62.8 147 24.5
GSVIVG01015233001 Vitis vinifera HOM05D000001 ORTHO05D000003 9.0e-08 62.8 137 29.9
CAN.G354.69 Capsicum annuum HOM05D007390 ORTHO05D009114 1.5e-07 62.0 124 32.3
Nn4g25162 Nelumbo nucifera HOM05D000162 ORTHO05D010307 1.5e-07 62.0 103 35.0
Zm00001eb025110 Zea mays HOM05D007552 ORTHO05D009397 3.4e-07 60.8 83 34.9
Actinidia18579 Actinidia chinensis HOM05D000001 ORTHO05D000003 4.5e-07 60.5 90 34.4
Hma1.2p1_1765F.1_g301480 Hydrangea macrophylla HOM05D000424 ORTHO05D000355 5.8e-07 60.1 67 43.3
Zm00001eb111970 Zea mays HOM05D017260 ORTHO05D014237 5.8e-07 60.1 144 23.6
Nitab4.5_0000163g0140 Nicotiana tabacum HOM05D007390 ORTHO05D009114 7.6e-07 59.7 85 36.5
Nitab4.5_0000316g0260 Nicotiana tabacum HOM05D005973 ORTHO05D007285 7.6e-07 59.7 119 26.1
Nitab4.5_0001775g0060 Nicotiana tabacum HOM05D005973 ORTHO05D007285 7.6e-07 59.7 123 24.4
Actinidia22483 Actinidia chinensis HOM05D000001 ORTHO05D009502 1.0e-06 59.3 146 24.7
ATR0820G217 Amborella trichopoda HOM05D005973 ORTHO05D007285 1.0e-06 59.3 146 24.7
AagrBONN_evm.TU.Sc2ySwM_368.2504 Anthoceros agrestis HOM05D000001 ORTHO05D000003 1.0e-06 59.3 146 27.4
CDE01G0171 Ceratophyllum demersum HOM05D007620 ORTHO05D009568 1.0e-06 59.3 126 27.8
Eucgr.F02741 Eucalyptus grandis HOM05D000001 ORTHO05D000003 1.0e-06 59.3 139 25.9
Gohir.A05G279200 Gossypium hirsutum HOM05D000001 ORTHO05D000003 1.0e-06 59.3 145 22.1
Aa31LG2G1310 Aethionema arabicum HOM05D000001 ORTHO05D009144 1.3e-06 58.9 162 27.8
TAR628G0984 Trochodendron aralioides HOM05D000001 ORTHO05D000003 1.3e-06 58.9 144 23.6
EL10Ac2g03431 Beta vulgaris HOM05D000001 ORTHO05D000003 2.2e-06 58.2 86 25.6
QL09p040247 Quercus lobata HOM05D005973 ORTHO05D007285 2.2e-06 58.2 126 25.4
arahy.Tifrunner.gnm1.ann1.0YDK6Q Arachis hypogaea HOM05D006842 ORTHO05D008908 2.9e-06 57.8 127 26.0
arahy.Tifrunner.gnm1.ann1.25Z6GM Arachis hypogaea HOM05D006842 ORTHO05D008908 2.9e-06 57.8 127 26.0
COL.COLO4_24521 Corchorus olitorius HOM05D002453 ORTHO05D002107 2.9e-06 57.8 86 31.4
Migut.O00139 Erythranthe guttata HOM05D000001 ORTHO05D009144 2.9e-06 57.8 164 28.7
HPP92_003815 Vanilla planifolia HOM05D017260 ORTHO05D014237 2.9e-06 57.8 112 25.9
COL.COLO4_27086 Corchorus olitorius HOM05D001673 ORTHO05D002312 3.8e-06 57.4 114 28.9
Migut.F00914 Erythranthe guttata HOM05D000162 ORTHO05D000090 3.8e-06 57.4 146 26.0
Nn3g18307 Nelumbo nucifera HOM05D000162 ORTHO05D000090 3.8e-06 57.4 118 24.6
Potri.005G187800 Populus trichocarpa HOM05D000001 ORTHO05D000003 3.8e-06 57.4 145 24.8
TAR623G0408 Trochodendron aralioides HOM05D000001 ORTHO05D000003 3.8e-06 57.4 133 24.8
HPP92_028166 Vanilla planifolia HOM05D000001 ORTHO05D000003 3.8e-06 57.4 174 26.4
AUR62017017 Chenopodium quinoa HOM05D000001 ORTHO05D010094 4.9e-06 57.0 177 24.3
COL.COLO4_17527 Corchorus olitorius HOM05D000891 ORTHO05D008746 4.9e-06 57.0 116 29.3
Haze_19716 Corylus avellana HOM05D000001 ORTHO05D009834 4.9e-06 57.0 94 27.7
ECA248G1254 Erigeron canadensis HOM05D000001 ORTHO05D000003 4.9e-06 57.0 158 29.1
Actinidia01285 Actinidia chinensis HOM05D006842 ORTHO05D008908 6.5e-06 56.6 97 28.9
EL10Ac6g14755 Beta vulgaris HOM05D000249 ORTHO05D000206 6.5e-06 56.6 123 26.8
MD10G1080500 Malus domestica HOM05D000001 ORTHO05D009502 6.5e-06 56.6 139 24.5
Nn5g29833 Nelumbo nucifera HOM05D000001 ORTHO05D000003 6.5e-06 56.6 144 25.0
Pp3c24_14870 Physcomitrium patens HOM05D000001 ORTHO05D000003 6.5e-06 56.6 209 19.6
Prupe.2G231000 Prunus persica HOM05D000001 ORTHO05D000003 6.5e-06 56.6 145 22.8
Prupe.6G241600 Prunus persica HOM05D000855 ORTHO05D008530 6.5e-06 56.6 114 28.9
AagrBONN_evm.TU.Sc2ySwM_344.162 Anthoceros agrestis HOM05D000001 ORTHO05D000003 8.4e-06 56.2 82 32.9
Aqoxy5G03347 Aquilegia oxysepala HOM05D000162 ORTHO05D000090 8.4e-06 56.2 140 25.7
CSS0035320 Camellia sinensis var. sinensis HOM05D000001 ORTHO05D009502 8.4e-06 56.2 145 22.8
Cfa016689 Carpinus fangiana HOM05D000001 ORTHO05D009834 8.4e-06 56.2 94 27.7
Gohir.D05G280800 Gossypium hirsutum HOM05D000001 ORTHO05D000003 8.4e-06 56.2 145 20.0
HanXRQChr04g0108241 Helianthus annuus HOM05D000001 ORTHO05D000003 8.4e-06 56.2 287 22.6
PSO339G1208 Papaver somniferum HOM05D005973 ORTHO05D007285 8.4e-06 56.2 126 23.8
GSVIVG01007674001 Vitis vinifera HOM05D000001 ORTHO05D009144 8.4e-06 56.2 173 25.4


User provided reference genes

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