Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10033395m.g Citrus clementina HOM05D000246 ORTHO05D005907 3.5e-194 681.4 340 100.0
Aqoxy2G04069 Aquilegia oxysepala HOM05D000246 ORTHO05D005907 4.9e-127 458.4 341 69.5
Dinv22710 Davidia involucrata HOM05D000246 ORTHO05D005907 1.9e-126 456.4 344 68.6
Ciclev10005378m.g Citrus clementina HOM05D000246 ORTHO05D005907 2.4e-126 456.1 344 66.9
Peaxi162Scf00378g00062 Petunia axillaris HOM05D000246 ORTHO05D005907 5.4e-126 454.9 341 68.9
Nitab4.5_0012487g0010 Nicotiana tabacum HOM05D000246 ORTHO05D005907 1.2e-125 453.8 341 68.0
Lalb_Chr25g0284231 Lupinus albus HOM05D000246 ORTHO05D005907 2.7e-125 452.6 344 67.7
Lsat_1_v5_gn_6_71461 Lactuca sativa HOM05D000246 ORTHO05D005907 3.5e-125 452.2 339 67.6
PGSC0003DMG400004583 Solanum tuberosum HOM05D000246 ORTHO05D005907 3.5e-125 452.2 341 68.0
GSVIVG01031659001 Vitis vinifera HOM05D000246 ORTHO05D005907 3.5e-125 452.2 344 67.7
Gohir.D05G327500 Gossypium hirsutum HOM05D000246 ORTHO05D005907 4.6e-125 451.8 344 67.7
Glyma.18G284200 Glycine max HOM05D000246 ORTHO05D005907 6.0e-125 451.4 343 67.3
Glyma.02G097300 Glycine max HOM05D000246 ORTHO05D005907 7.8e-125 451.1 343 67.3
Gorai.009G351400 Gossypium raimondii HOM05D000246 ORTHO05D005907 7.8e-125 451.1 344 67.4
MBI07_g06132_MAGBIO Magnolia biondii HOM05D000246 ORTHO05D005907 1.3e-124 450.3 344 67.2
Phvul.008G017300 Phaseolus vulgaris HOM05D000246 ORTHO05D005907 1.3e-124 450.3 341 67.4
Sopen12g033430 Solanum pennellii HOM05D000246 ORTHO05D005907 1.3e-124 450.3 341 67.7
Hma1.2p1_3184F.1_g333720 Hydrangea macrophylla HOM05D000246 ORTHO05D005907 1.7e-124 449.9 343 67.6
Cc03_g10680 Coffea canephora HOM05D000246 ORTHO05D005907 2.3e-124 449.5 343 68.2
VMungo1383G1353 Vigna mungo HOM05D000246 ORTHO05D005907 2.3e-124 449.5 341 67.7
arahy.Tifrunner.gnm1.ann1.13067A Arachis hypogaea HOM05D000246 ORTHO05D005907 3.0e-124 449.1 344 66.6
arahy.Tifrunner.gnm1.ann1.N8MPD0 Arachis hypogaea HOM05D000246 ORTHO05D005907 3.0e-124 449.1 344 66.6
arahy.Tifrunner.gnm1.ann1.P7X33L Arachis hypogaea HOM05D000246 ORTHO05D005907 3.0e-124 449.1 344 66.6
Potri.014G147100 Populus trichocarpa HOM05D000246 ORTHO05D005907 3.9e-124 448.7 344 67.7
Nitab4.5_0006519g0040 Nicotiana tabacum HOM05D000246 ORTHO05D005907 5.1e-124 448.4 341 66.3
CsaV3_4G003350 Cucumis sativus L. HOM05D000246 ORTHO05D005907 6.6e-124 448.0 344 66.9
Lsat_1_v5_gn_6_32061 Lactuca sativa HOM05D000246 ORTHO05D005907 6.6e-124 448.0 339 67.3
ClCG07G015740 Citrullus lanatus HOM05D000246 ORTHO05D005907 8.6e-124 447.6 344 66.9
Lj3C235G1 Lonicera japonica HOM05D000246 ORTHO05D005907 1.1e-123 447.2 341 66.9
TWI53G1869 Tripterygium wilfordii HOM05D000246 ORTHO05D005907 1.1e-123 447.2 343 67.1
Nitab4.5_0000978g0210 Nicotiana tabacum HOM05D000246 ORTHO05D005907 1.5e-123 446.8 341 66.9
Eucgr.H00462 Eucalyptus grandis HOM05D000246 ORTHO05D005907 2.5e-123 446.0 343 66.8
Gohir.D09G203200 Gossypium hirsutum HOM05D000246 ORTHO05D005907 2.5e-123 446.0 344 67.2
Lj1g0023209 Lotus japonicus HOM05D000246 ORTHO05D005907 2.5e-123 446.0 343 67.3
CANSAT78G0915 Cannabis sativa HOM05D000246 ORTHO05D005907 3.3e-123 445.7 344 66.6
Lalb_Chr10g0092081 Lupinus albus HOM05D000246 ORTHO05D005907 3.3e-123 445.7 343 66.2
Solyc09g098280.3 Solanum lycopersicum HOM05D000246 ORTHO05D005907 4.3e-123 445.3 341 67.2
PGSC0003DMG400021629 Solanum tuberosum HOM05D000246 ORTHO05D005907 4.3e-123 445.3 341 67.2
Thecc.04G186400 Theobroma cacao HOM05D000246 ORTHO05D005907 4.3e-123 445.3 342 67.0
Potri.002G233500 Populus trichocarpa HOM05D000246 ORTHO05D005907 5.6e-123 444.9 344 66.6
CiPaw.01G109200 Carya illinoinensis HOM05D000246 ORTHO05D005907 7.3e-123 444.5 341 66.9
PGR142G3194 Punica granatum HOM05D000246 ORTHO05D005907 7.3e-123 444.5 341 66.0
Sed0019335 Sechium edule HOM05D000246 ORTHO05D005907 7.3e-123 444.5 344 66.6
DCAR_004354 Daucus carota HOM05D000246 ORTHO05D005907 9.5e-123 444.1 341 66.6
Sopen09g036210 Solanum pennellii HOM05D000246 ORTHO05D005907 9.5e-123 444.1 341 66.9
Cfa008706 Carpinus fangiana HOM05D000246 ORTHO05D005907 1.2e-122 443.7 343 66.5
Gohir.A09G209800 Gossypium hirsutum HOM05D000246 ORTHO05D005907 1.2e-122 443.7 344 66.9
Migut.N00444 Erythranthe guttata HOM05D000246 ORTHO05D005907 1.6e-122 443.4 339 67.0
Gorai.006G227100 Gossypium raimondii HOM05D000246 ORTHO05D005907 1.6e-122 443.4 344 66.6
Manes.01G119800 Manihot esculenta HOM05D000246 ORTHO05D005907 1.6e-122 443.4 343 67.1
Prupe.1G177100 Prunus persica HOM05D000246 ORTHO05D005907 2.1e-122 443.0 344 66.6
TWI09G0257 Tripterygium wilfordii HOM05D000246 ORTHO05D005907 2.1e-122 443.0 342 67.3
Ca_07120_v3 Cicer arietinum L. HOM05D000246 ORTHO05D005907 2.8e-122 442.6 341 66.3
HanXRQChr10g0290061 Helianthus annuus HOM05D000246 ORTHO05D005907 2.8e-122 442.6 341 66.6
Sed0019749 Sechium edule HOM05D000246 ORTHO05D005907 2.8e-122 442.6 344 66.6
Manes.02G078000 Manihot esculenta HOM05D000246 ORTHO05D005907 3.6e-122 442.2 343 67.1
unitig_578.g16351 Utricularia gibba HOM05D000246 ORTHO05D005907 3.6e-122 442.2 341 66.9
MSTRG.21977 Avicennia marina HOM05D000246 ORTHO05D005907 4.7e-122 441.8 341 66.3
Haze_11715 Corylus avellana HOM05D000246 ORTHO05D005907 4.7e-122 441.8 343 66.2
PSO675G5278 Papaver somniferum HOM05D000246 ORTHO05D005907 4.7e-122 441.8 344 66.0
Atru.chr3.1829 Acer truncatum HOM05D000246 ORTHO05D005907 6.2e-122 441.4 324 69.4
PSO017G6996 Papaver somniferum HOM05D000246 ORTHO05D005907 1.1e-121 440.7 344 65.7
Psat3g188360 Pisum sativum HOM05D000246 ORTHO05D005907 2.3e-121 439.5 341 65.7
THA.LOC104819306 Tarenaya hassleriana HOM05D000246 ORTHO05D005907 2.3e-121 439.5 344 66.3
Cpa.g.sc53.167 Carica papaya HOM05D000246 ORTHO05D005907 3.1e-121 439.1 344 66.3
MD04G1027700 Malus domestica HOM05D000246 ORTHO05D005907 3.1e-121 439.1 343 65.9
RcHm_v2.0_Chr4g0410381 Rosa chinensis HOM05D000246 ORTHO05D005907 3.1e-121 439.1 344 66.6
AUR62020934 Chenopodium quinoa HOM05D000246 ORTHO05D005907 5.2e-121 438.3 341 65.1
Sp1g09540 Schrenkiella parvula HOM05D000246 ORTHO05D005907 5.2e-121 438.3 344 65.1
BcaC05g24965 Brassica carinata HOM05D000246 ORTHO05D005907 8.9e-121 437.6 344 64.8
A08p33760 Brassica napus HOM05D000246 ORTHO05D005907 8.9e-121 437.6 344 64.5
Actinidia35924 Actinidia chinensis HOM05D000246 ORTHO05D005907 1.2e-120 437.2 344 67.7
BcaC07g38630 Brassica carinata HOM05D000246 ORTHO05D005396 1.2e-120 437.2 344 64.5
BraA08t35292Z Brassica rapa HOM05D000246 ORTHO05D005907 1.2e-120 437.2 344 64.8
Thhalv10008134m.g Eutrema salsugineum HOM05D000246 ORTHO05D005907 1.2e-120 437.2 344 64.8
Nn1g09763 Nelumbo nucifera HOM05D000246 ORTHO05D005907 1.2e-120 437.2 344 65.1
Sc19g0007630 Simmondsia chinensis HOM05D000246 ORTHO05D005907 1.2e-120 437.2 341 64.8
AT1G10840 Arabidopsis thaliana HOM05D000246 ORTHO05D005907 1.5e-120 436.8 344 65.1
C05p09210 Brassica napus HOM05D000246 ORTHO05D005907 1.5e-120 436.8 344 64.5
Aa31LG1G4010 Aethionema arabicum HOM05D000246 ORTHO05D005907 2.0e-120 436.4 344 64.8
HPP92_006214 Vanilla planifolia HOM05D000246 ORTHO05D005907 2.0e-120 436.4 344 64.0
FvH4_4g12310 Fragaria vesca HOM05D000246 ORTHO05D005907 2.6e-120 436.0 344 65.4
FAN12G0598 Fragaria x ananassa HOM05D000246 ORTHO05D005907 2.6e-120 436.0 344 65.4
BraA09t41822Z Brassica rapa HOM05D000246 ORTHO05D005907 3.4e-120 435.6 344 64.5
Medtr7g021870 Medicago truncatula HOM05D000246 ORTHO05D005907 4.4e-120 435.3 340 65.3
BcaC07g38591 Brassica carinata HOM05D000246 ORTHO05D005907 5.8e-120 434.9 344 64.8
FAN17G0846 Fragaria x ananassa HOM05D000246 ORTHO05D005907 5.8e-120 434.9 344 66.3
A06p07620 Brassica napus HOM05D000246 ORTHO05D005907 7.6e-120 434.5 344 64.2
BolC8t52387H Brassica oleracea HOM05D000246 ORTHO05D005907 7.6e-120 434.5 344 64.2
BraA06t23964Z Brassica rapa HOM05D000246 ORTHO05D005907 7.6e-120 434.5 344 64.2
C08p48480 Brassica napus HOM05D000246 ORTHO05D005907 9.9e-120 434.1 344 64.2
Hund24461 Selenicereus undatus HOM05D000246 ORTHO05D005907 9.9e-120 434.1 341 65.1
EL10Ac3g07395 Beta vulgaris HOM05D000246 ORTHO05D005907 1.3e-119 433.7 341 65.1
FAN22G2422 Fragaria x ananassa HOM05D000246 ORTHO05D005907 1.3e-119 433.7 344 65.4
BolC8t49032H Brassica oleracea HOM05D000246 ORTHO05D005907 1.7e-119 433.3 344 64.5
Carub.0001s1038 Capsella rubella HOM05D000246 ORTHO05D005907 1.7e-119 433.3 343 64.4
AL1G21780 Arabidopsis lyrata HOM05D000246 ORTHO05D005907 2.2e-119 433.0 344 64.2
FAN07G2572 Fragaria x ananassa HOM05D000246 ORTHO05D005907 3.7e-119 432.2 344 65.7
THA.LOC104809592 Tarenaya hassleriana HOM05D000246 ORTHO05D005907 1.1e-118 430.6 344 64.5
BcaNung06200 Brassica carinata HOM05D000246 ORTHO05D005907 1.9e-118 429.9 336 64.0
CARHR011060 Cardamine hirsuta HOM05D000246 ORTHO05D005907 1.9e-118 429.9 344 63.7
CAN.G710.44 Capsicum annuum HOM05D000246 ORTHO05D005907 2.4e-118 429.5 316 67.7
CDE05G2302 Ceratophyllum demersum HOM05D000246 ORTHO05D005907 2.4e-118 429.5 339 64.3
Lj3C238T3 Lonicera japonica HOM05D000246 ORTHO05D005907 5.4e-118 428.3 327 66.7
Rhsim09G0037600 Rhododendron simsii HOM05D000246 ORTHO05D005907 9.2e-118 427.6 364 63.5
SalBow6G1195 Salvia bowleyana HOM05D000246 ORTHO05D005907 1.2e-117 427.2 381 60.6
SGA_v2.0_scaffold178G39529 Striga asiatica HOM05D000246 ORTHO05D005907 1.6e-117 426.8 316 68.0
QL06p027657 Quercus lobata HOM05D000246 ORTHO05D005907 2.7e-117 426.0 324 67.9
A09p64720 Brassica napus HOM05D000246 ORTHO05D005907 3.5e-117 425.6 359 61.6
Os04g0376500 Oryza sativa ssp. japonica HOM05D000246 ORTHO05D005907 6.0e-117 424.9 343 63.6
Sabra14G0110400 Salix brachista HOM05D000246 ORTHO05D005907 6.0e-117 424.9 341 65.4
DCAR_001263 Daucus carota HOM05D000246 ORTHO05D005907 3.0e-116 422.5 321 67.3
CDE05G0298 Ceratophyllum demersum HOM05D000246 ORTHO05D005907 7.3e-115 417.9 339 62.5
Nitab4.5_0001526g0070 Nicotiana tabacum HOM05D000246 ORTHO05D005907 2.8e-114 416.0 341 63.6
SMO201G0006 Selaginella moellendorffii HOM05D000246 ORTHO05D005907 3.6e-114 415.6 344 62.5
Zm00001eb420800 Zea mays HOM05D000246 ORTHO05D005907 3.6e-114 415.6 342 62.3
Dinv44209 Davidia involucrata HOM05D000246 ORTHO05D005907 6.2e-114 414.8 344 62.5
BolC5t29661H Brassica oleracea HOM05D000246 ORTHO05D005907 1.8e-113 413.3 324 64.5
FAN12G1501 Fragaria x ananassa HOM05D000246 ORTHO05D005907 1.8e-113 413.3 324 65.4
ATR1147G030 Amborella trichopoda HOM05D000246 ORTHO05D005907 5.2e-113 411.8 324 64.5
Duzib268G0303 Durio zibethinus HOM05D000246 ORTHO05D005907 3.4e-112 409.1 342 62.6
Mapoly0149s0014 Marchantia polymorpha HOM05D000246 ORTHO05D005907 9.9e-112 407.5 339 59.9
Pp3c25_2440 Physcomitrium patens HOM05D000246 ORTHO05D005907 1.4e-110 403.7 341 60.7
SEGI_02915 Sequoiadendron giganteum HOM05D000246 ORTHO05D005907 4.2e-110 402.1 341 60.7
Pp3c6_17230 Physcomitrium patens HOM05D000246 ORTHO05D005907 5.4e-110 401.7 341 60.1
Oeu034474.1 Olea europaea HOM05D000246 ORTHO05D005907 6.6e-108 394.8 383 56.4
C08p13990 Brassica napus HOM05D000246 ORTHO05D005907 2.1e-106 389.8 370 57.3
CBR_g23450 Chara braunii HOM05D000246 ORTHO05D005907 1.5e-104 383.6 320 60.0
vmacro00560 Vaccinium macrocarpon HOM05D000246 ORTHO05D005907 9.3e-102 374.4 429 51.5
TPR.G2903 Trifolium pratense HOM05D000246 ORTHO05D005907 4.3e-99 365.5 297 63.3
CSS0028322 Camellia sinensis var. sinensis HOM05D000246 ORTHO05D005907 3.4e-96 355.9 273 66.3
Nn7g38282 Nelumbo nucifera HOM05D000246 ORTHO05D005907 9.9e-96 354.4 344 57.8
TAR365G1195 Trochodendron aralioides HOM05D000246 ORTHO05D005907 2.2e-95 353.2 274 66.8
Hma1.2p1_1025F.1_g249250 Hydrangea macrophylla HOM05D000246 ORTHO05D005907 1.1e-94 350.9 274 66.4
Hma1.2p1_3184F.1_g333715 Hydrangea macrophylla HOM05D000246 ORTHO05D005907 1.1e-94 350.9 274 66.4
PRCOL_00002009 Prasinoderma coloniale HOM05D000246 ORTHO05D005907 9.3e-94 347.8 333 51.4
Duzib151G0358 Durio zibethinus HOM05D000246 ORTHO05D005907 1.2e-88 330.9 342 54.4
COL.COLO4_08082 Corchorus olitorius HOM05D000246 ORTHO05D005907 2.6e-88 329.7 337 56.1
ECA238G0367 Erigeron canadensis HOM05D000246 ORTHO05D005907 4.2e-86 322.4 241 66.0
Zm00001eb420740 Zea mays HOM05D000246 ORTHO05D005907 1.3e-84 317.4 254 62.6
MCO05G711 Micromonas commoda HOM05D000246 ORTHO05D005907 1.1e-83 314.3 328 50.6
Cre16.g676314 Chlamydomonas reinhardtii HOM05D000246 ORTHO05D005907 7.4e-83 311.6 317 50.5
AagrBONN_evm.TU.Sc2ySwM_344.209 Anthoceros agrestis HOM05D000246 ORTHO05D005907 6.9e-81 305.1 250 64.0
AUR62018486 Chenopodium quinoa HOM05D000246 ORTHO05D005907 1.2e-77 294.3 254 59.4
MELO3C017707.2 Cucumis melo HOM05D000246 ORTHO05D005907 1.3e-76 290.8 218 66.5
SHI25257 Sapria himalayana HOM05D000246 ORTHO05D005907 5.5e-38 162.5 134 64.2
Pp3c25_2670 Physcomitrium patens HOM05D000246 ORTHO05D005907 1.5e-30 137.9 172 52.3
PSO675G6425 Papaver somniferum HOM05D000246 ORTHO05D005907 2.1e-21 107.5 79 60.8
Dinv10886 Davidia involucrata HOM05D000246 ORTHO05D005907 5.8e-19 99.4 78 61.5
Actinidia32962 Actinidia chinensis HOM05D000246 ORTHO05D052905 3.7e-18 96.7 122 49.2
Dinv10847 Davidia involucrata HOM05D000246 ORTHO05D005907 2.4e-17 94.0 77 57.1
AagrBONN_evm.TU.Sc2ySwM_362.466 Anthoceros agrestis HOM05D000246 ORTHO05D075151 3.0e-15 87.0 74 55.4
COL.COLO4_30406 Corchorus olitorius HOM05D000246 ORTHO05D005907 6.6e-15 85.9 81 51.9
VMungo0331G1529 Vigna mungo HOM05D000246 ORTHO05D436255 2.2e-10 70.9 39 84.6
FAN20G1849 Fragaria x ananassa HOM05D000246 ORTHO05D209582 3.7e-10 70.1 59 57.6
AagrBONN_evm.TU.Sc2ySwM_362.465 Anthoceros agrestis HOM05D000246 ORTHO05D076687 9.5e-06 55.5 102 36.3


User provided reference genes

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