Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10033223m.g Citrus clementina HOM05D006892 ORTHO05D008592 5.7e-42 173.7 81 100.0
Haze_18710 Corylus avellana HOM05D006892 ORTHO05D008592 1.3e-17 92.8 79 50.6
Dinv34454 Davidia involucrata HOM05D006892 ORTHO05D008592 3.7e-17 91.3 78 53.8
Haze_17148 Corylus avellana HOM05D000015 ORTHO05D000270 4.9e-17 90.9 75 52.0
GSVIVG01016437001 Vitis vinifera HOM05D006892 ORTHO05D008592 4.9e-17 90.9 77 51.9
Hma1.2p1_0039F.1_g024865 Hydrangea macrophylla HOM05D006892 ORTHO05D008592 8.3e-17 90.1 75 52.0
Hma1.2p1_0039F.1_g024870 Hydrangea macrophylla HOM05D006892 ORTHO05D008592 8.3e-17 90.1 75 52.0
Thecc.05G029200 Theobroma cacao HOM05D006892 ORTHO05D008592 8.3e-17 90.1 79 54.4
TAR623G0452 Trochodendron aralioides HOM05D006892 ORTHO05D008592 1.1e-16 89.7 78 52.6
Haze_17150 Corylus avellana HOM05D006892 ORTHO05D008592 1.4e-16 89.4 81 50.6
TAR636G2473 Trochodendron aralioides HOM05D006892 ORTHO05D008592 3.2e-16 88.2 81 51.9
Atru.chr8.2090 Acer truncatum HOM05D006892 ORTHO05D008592 4.1e-16 87.8 77 54.5
CSS0011916 Camellia sinensis var. sinensis HOM05D006892 ORTHO05D008592 4.1e-16 87.8 82 51.2
Cfa001402 Carpinus fangiana HOM05D006892 ORTHO05D008592 9.2e-16 86.7 80 50.0
Gohir.A09G152400 Gossypium hirsutum HOM05D006892 ORTHO05D008592 1.6e-15 85.9 79 51.9
Gohir.D09G148100 Gossypium hirsutum HOM05D006892 ORTHO05D008592 1.6e-15 85.9 79 51.9
Gorai.006G169100 Gossypium raimondii HOM05D006892 ORTHO05D008592 1.6e-15 85.9 79 51.9
TAR633G0729 Trochodendron aralioides HOM05D006892 ORTHO05D008592 1.6e-15 85.9 77 53.2
Atru.chr12.266 Acer truncatum HOM05D006892 ORTHO05D008592 3.5e-15 84.7 84 54.8
Dinv37115 Davidia involucrata HOM05D006892 ORTHO05D008592 1.3e-14 82.8 78 51.3
MD12G1154700 Malus domestica HOM05D006892 ORTHO05D008592 1.3e-14 82.8 72 52.8
Gohir.D04G125400 Gossypium hirsutum HOM05D006892 ORTHO05D008592 1.7e-14 82.4 78 51.3
Gorai.012G108500 Gossypium raimondii HOM05D006892 ORTHO05D008592 1.7e-14 82.4 78 51.3
CiPaw.01G293100 Carya illinoinensis HOM05D006892 ORTHO05D008592 2.3e-14 82.0 83 44.6
FAN14G5964 Fragaria x ananassa HOM05D006892 ORTHO05D008592 3.9e-14 81.3 73 52.1
COL.COLO4_14695 Corchorus olitorius HOM05D006892 ORTHO05D008592 5.0e-14 80.9 81 50.6
FAN09G3730 Fragaria x ananassa HOM05D006892 ORTHO05D008592 5.0e-14 80.9 73 52.1
Ciclev10013234m.g Citrus clementina HOM05D006892 ORTHO05D008592 6.6e-14 80.5 77 48.1
Eucgr.G02997 Eucalyptus grandis HOM05D006892 ORTHO05D008592 6.6e-14 80.5 71 53.5
Eucgr.G02995 Eucalyptus grandis HOM05D006892 ORTHO05D008592 8.6e-14 80.1 72 55.6
FAN05G3252 Fragaria x ananassa HOM05D006892 ORTHO05D008592 1.1e-13 79.7 73 50.7
RcHm_v2.0_Chr3g0464651 Rosa chinensis HOM05D006892 ORTHO05D008592 1.1e-13 79.7 73 52.1
FvH4_6g12730 Fragaria vesca HOM05D006892 ORTHO05D008592 1.9e-13 79.0 73 50.7
FAN02G3144 Fragaria x ananassa HOM05D006892 ORTHO05D008592 1.9e-13 79.0 73 50.7
Lj1g0020029 Lotus japonicus HOM05D006892 ORTHO05D008592 1.9e-13 79.0 73 47.9
MD04G1138900 Malus domestica HOM05D006892 ORTHO05D008592 1.9e-13 79.0 69 55.1
Prupe.6G264500 Prunus persica HOM05D006892 ORTHO05D008592 1.9e-13 79.0 81 44.4
Psat3g133520 Pisum sativum HOM05D006892 ORTHO05D008592 2.5e-13 78.6 73 50.7
Glyma.07G139200 Glycine max HOM05D006892 ORTHO05D008592 3.3e-13 78.2 73 50.7
Lalb_Chr19g0125031 Lupinus albus HOM05D006892 ORTHO05D008592 3.3e-13 78.2 77 46.8
MBI14_g02865_MAGBIO Magnolia biondii HOM05D006892 ORTHO05D008592 3.3e-13 78.2 72 52.8
Glyma.01G105400 Glycine max HOM05D006892 ORTHO05D008592 4.3e-13 77.8 75 48.0
Cpa.g.sc56.60 Carica papaya HOM05D006892 ORTHO05D008592 5.6e-13 77.4 70 45.7
Haze_20883 Corylus avellana HOM05D006892 ORTHO05D008592 5.6e-13 77.4 79 45.6
Haze_20892 Corylus avellana HOM05D006892 ORTHO05D008592 5.6e-13 77.4 79 45.6
Glyma.03G073200 Glycine max HOM05D006892 ORTHO05D008592 7.3e-13 77.0 73 52.1
Gohir.A04G085600 Gossypium hirsutum HOM05D006892 ORTHO05D008592 7.3e-13 77.0 78 48.7
Lj3g0005144 Lotus japonicus HOM05D006892 ORTHO05D008592 7.3e-13 77.0 71 49.3
Lalb_Chr03g0042701 Lupinus albus HOM05D006892 ORTHO05D008592 9.5e-13 76.6 81 43.2
Medtr7g065130 Medicago truncatula HOM05D006892 ORTHO05D008592 1.2e-12 76.3 79 45.6
Sabra08G0045200 Salix brachista HOM05D006892 ORTHO05D008592 1.2e-12 76.3 72 51.4
TPR.G34921 Trifolium pratense HOM05D006892 ORTHO05D008592 1.2e-12 76.3 75 45.3
CSS0020330 Camellia sinensis var. sinensis HOM05D006892 ORTHO05D008592 1.6e-12 75.9 80 50.0
Potri.010G196500 Populus trichocarpa HOM05D006892 ORTHO05D008592 1.6e-12 75.9 72 50.0
CSS0005500 Camellia sinensis var. sinensis HOM05D006892 ORTHO05D008592 2.1e-12 75.5 81 49.4
Gohir.D10G238364 Gossypium hirsutum HOM05D006892 ORTHO05D008592 2.8e-12 75.1 83 44.6
Medtr4g019640 Medicago truncatula HOM05D006892 ORTHO05D008592 2.8e-12 75.1 74 48.6
Phvul.010G009200 Phaseolus vulgaris HOM05D006892 ORTHO05D008592 2.8e-12 75.1 74 52.7
Glyma.18G189800 Glycine max HOM05D006892 ORTHO05D008592 3.6e-12 74.7 73 47.9
MBI05_g02667_MAGBIO Magnolia biondii HOM05D006892 ORTHO05D008592 3.6e-12 74.7 40 70.0
MBI14_g02866_MAGBIO Magnolia biondii HOM05D006892 ORTHO05D008592 3.6e-12 74.7 72 50.0
CSS0009632 Camellia sinensis var. sinensis HOM05D006892 ORTHO05D008592 4.7e-12 74.3 80 50.0
Glyma.04G105400 Glycine max HOM05D006892 ORTHO05D008592 4.7e-12 74.3 72 47.2
arahy.Tifrunner.gnm1.ann1.KB6CC9 Arachis hypogaea HOM05D006892 ORTHO05D008592 6.2e-12 73.9 53 58.5
arahy.Tifrunner.gnm1.ann1.KX701I Arachis hypogaea HOM05D006892 ORTHO05D008592 6.2e-12 73.9 53 58.5
Manes.07G122400 Manihot esculenta HOM05D006892 ORTHO05D008592 8.1e-12 73.6 87 40.2
Manes.09G098400 Manihot esculenta HOM05D006892 ORTHO05D008592 8.1e-12 73.6 72 54.2
CiPaw.09G201300 Carya illinoinensis HOM05D006892 ORTHO05D008592 1.4e-11 72.8 76 51.3
Gorai.011G273300 Gossypium raimondii HOM05D006892 ORTHO05D008592 1.4e-11 72.8 78 44.9
Manes.08G082100 Manihot esculenta HOM05D006892 ORTHO05D008592 1.4e-11 72.8 74 51.4
Psat7g241320 Pisum sativum HOM05D006892 ORTHO05D008592 1.4e-11 72.8 79 46.8
CSS0014654 Camellia sinensis var. sinensis HOM05D006892 ORTHO05D008592 1.8e-11 72.4 77 48.1
Phvul.008G114100 Phaseolus vulgaris HOM05D006892 ORTHO05D008592 2.3e-11 72.0 70 51.4
Sabra10G0151100 Salix brachista HOM05D006892 ORTHO05D008592 2.3e-11 72.0 72 47.2
PGSC0003DMG400024270 Solanum tuberosum HOM05D006892 ORTHO05D008592 2.3e-11 72.0 76 47.4
Gohir.A10G225300 Gossypium hirsutum HOM05D006892 ORTHO05D008592 3.1e-11 71.6 83 44.6
Manes.10G021300 Manihot esculenta HOM05D006892 ORTHO05D008592 4.0e-11 71.2 79 39.2
Phvul.001G238200 Phaseolus vulgaris HOM05D006892 ORTHO05D008592 4.0e-11 71.2 81 43.2
Nn2g13528 Nelumbo nucifera HOM05D006892 ORTHO05D008592 5.2e-11 70.9 75 49.3
Actinidia02903 Actinidia chinensis HOM05D006892 ORTHO05D008592 1.5e-10 69.3 85 43.5
Medtr3g069540 Medicago truncatula HOM05D006892 ORTHO05D008592 1.5e-10 69.3 78 44.9
Potri.008G061600 Populus trichocarpa HOM05D006892 ORTHO05D008592 1.5e-10 69.3 44 65.9
arahy.Tifrunner.gnm1.ann1.AC77RP Arachis hypogaea HOM05D006892 ORTHO05D008592 2.0e-10 68.9 78 44.9
HanXRQChr08g0221291 Helianthus annuus HOM05D006892 ORTHO05D008592 2.0e-10 68.9 72 43.1
Sopen09g006180 Solanum pennellii HOM05D006892 ORTHO05D008592 2.0e-10 68.9 79 44.3
arahy.Tifrunner.gnm1.ann1.71B432 Arachis hypogaea HOM05D006892 ORTHO05D008592 2.6e-10 68.6 78 44.9
TPR.G32561 Trifolium pratense HOM05D006892 ORTHO05D008592 2.6e-10 68.6 73 49.3
CiPaw.10G149300 Carya illinoinensis HOM05D006892 ORTHO05D008592 3.4e-10 68.2 79 48.1
COL.COLO4_36543 Corchorus olitorius HOM05D006892 ORTHO05D008592 4.4e-10 67.8 48 62.5
Cpa.g.sc19.256 Carica papaya HOM05D006892 ORTHO05D008592 7.5e-10 67.0 76 48.7
MBI14_g02869_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 7.5e-10 67.0 42 54.8
Thecc.10G031400 Theobroma cacao HOM05D006892 ORTHO05D008592 7.5e-10 67.0 75 45.3
Lsat_1_v5_gn_9_32981 Lactuca sativa HOM05D006892 ORTHO05D008592 1.7e-09 65.9 74 44.6
Lj6g0007525 Lotus japonicus HOM05D006892 ORTHO05D008592 2.2e-09 65.5 79 36.7
Glyma.18G033400 Glycine max HOM05D006892 ORTHO05D008592 2.9e-09 65.1 83 39.8
Potri.006G092300 Populus trichocarpa HOM05D006892 ORTHO05D008592 2.9e-09 65.1 38 63.2
HanXRQChr05g0156901 Helianthus annuus HOM05D006892 ORTHO05D008592 3.7e-09 64.7 36 63.9
Cc06_g02080 Coffea canephora HOM05D006892 ORTHO05D008592 4.9e-09 64.3 80 42.5
Sopen09g006190 Solanum pennellii HOM05D006892 ORTHO05D008592 4.9e-09 64.3 64 48.4
Potri.016G103900 Populus trichocarpa HOM05D006892 ORTHO05D008592 6.4e-09 63.9 38 63.2
Sabra06G0070000 Salix brachista HOM05D006892 ORTHO05D008592 8.3e-09 63.5 38 60.5
HPP92_019858 Vanilla planifolia HOM05D006892 ORTHO05D008592 8.3e-09 63.5 69 46.4
Rhsim05G0199800 Rhododendron simsii HOM05D006892 ORTHO05D008592 1.9e-08 62.4 68 47.1
CAN.G697.1 Capsicum annuum HOM05D006892 ORTHO05D008592 3.2e-08 61.6 97 41.2
Actinidia13165 Actinidia chinensis HOM05D006892 ORTHO05D008592 4.1e-08 61.2 73 43.8
Sed0015200 Sechium edule HOM05D006892 ORTHO05D008592 7.1e-08 60.5 42 59.5
ClCG04G007580 Citrullus lanatus HOM05D006892 ORTHO05D008592 9.2e-08 60.1 39 61.5
DCAR_028810 Daucus carota HOM05D006892 ORTHO05D008592 9.2e-08 60.1 40 55.0
TPR.G33720 Trifolium pratense HOM05D006892 ORTHO05D008592 2.1e-07 58.9 78 39.7
CDE02G2266 Ceratophyllum demersum HOM05D006892 ORTHO05D008592 6.0e-07 57.4 41 51.2
TAR633G0009 Trochodendron aralioides HOM05D006892 ORTHO05D414936 7.8e-07 57.0 72 45.8
arahy.Tifrunner.gnm1.ann1.J5YN7E Arachis hypogaea HOM05D006892 ORTHO05D008592 1.0e-06 56.6 83 36.1
arahy.Tifrunner.gnm1.ann1.F5D7CA Arachis hypogaea HOM05D006892 ORTHO05D008592 1.3e-06 56.2 36 61.1
Sopen03g027280 Solanum pennellii HOM05D006892 ORTHO05D008592 1.7e-06 55.8 33 57.6
MELO3C033485.2 Cucumis melo HOM05D006892 ORTHO05D008592 2.3e-06 55.5 77 42.9
GSVIVG01034067001 Vitis vinifera HOM05D006892 ORTHO05D008592 8.6e-06 53.5 32 65.6


User provided reference genes

Program Settings