Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10033215m.g Citrus clementina HOM05D003533 ORTHO05D004009 7.1e-43 176.8 85 100.0
Atru.chr11.1939 Acer truncatum HOM05D003533 ORTHO05D004009 1.4e-14 82.8 76 59.2
COL.COLO4_37881 Corchorus olitorius HOM05D003533 ORTHO05D004009 1.1e-11 73.2 78 52.6
Gohir.A05G319400 Gossypium hirsutum HOM05D003533 ORTHO05D004009 4.2e-11 71.2 80 51.2
Gohir.D05G321600 Gossypium hirsutum HOM05D003533 ORTHO05D004009 5.5e-11 70.9 80 53.8
Gorai.009G345100 Gossypium raimondii HOM05D003533 ORTHO05D004009 5.5e-11 70.9 80 53.8
TAR629G1875 Trochodendron aralioides HOM05D003533 ORTHO05D004009 1.6e-10 69.3 78 48.7
Hma1.2p1_0160F.1_g070540 Hydrangea macrophylla HOM05D003533 ORTHO05D004009 2.7e-10 68.6 83 48.2
Migut.I00058 Erythranthe guttata HOM05D003533 ORTHO05D004009 6.1e-10 67.4 81 49.4
MD06G1181300 Malus domestica HOM05D003533 ORTHO05D004009 1.0e-09 66.6 79 50.6
QL03p067197 Quercus lobata HOM05D003533 ORTHO05D004009 1.0e-09 66.6 74 47.3
unitig_62.g23572 Utricularia gibba HOM05D006519 ORTHO05D008306 1.0e-09 66.6 76 51.3
Thecc.03G004000 Theobroma cacao HOM05D003533 ORTHO05D004009 1.4e-09 66.2 77 49.4
Thecc.03G004200 Theobroma cacao HOM05D003533 ORTHO05D004009 1.8e-09 65.9 77 49.4
FAN18G0586 Fragaria x ananassa HOM05D003533 ORTHO05D004009 3.0e-09 65.1 81 48.1
FvH4_4g35190 Fragaria vesca HOM05D003533 ORTHO05D004009 3.9e-09 64.7 71 50.7
QL10p012332 Quercus lobata HOM05D003533 ORTHO05D004009 5.1e-09 64.3 78 47.4
Thecc.02G240400 Theobroma cacao HOM05D003533 ORTHO05D004009 5.1e-09 64.3 78 46.2
MD14G1187200 Malus domestica HOM05D003533 ORTHO05D004009 6.7e-09 63.9 78 50.0
PSO013G0065 Papaver somniferum HOM05D003533 ORTHO05D004009 6.7e-09 63.9 82 43.9
MELO3C017124.2 Cucumis melo HOM05D003533 ORTHO05D004009 8.8e-09 63.5 92 45.7
Lalb_Chr12g0201361 Lupinus albus HOM05D003533 ORTHO05D004009 8.8e-09 63.5 79 48.1
Solyc05g006390.1 Solanum lycopersicum HOM05D003533 ORTHO05D004009 8.8e-09 63.5 82 46.3
Sopen05g002310 Solanum pennellii HOM05D003533 ORTHO05D004009 8.8e-09 63.5 82 46.3
FAN12G1992 Fragaria x ananassa HOM05D003533 ORTHO05D004009 1.1e-08 63.2 71 49.3
Oeu005054.1 Olea europaea HOM05D003533 ORTHO05D004009 1.1e-08 63.2 83 48.2
Cc11_g14110 Coffea canephora HOM05D003533 ORTHO05D004009 1.5e-08 62.8 78 46.2
Eucgr.B00337 Eucalyptus grandis HOM05D003533 ORTHO05D004009 1.5e-08 62.8 86 45.3
Nitab4.5_0002059g0100 Nicotiana tabacum HOM05D003533 ORTHO05D004009 1.5e-08 62.8 81 45.7
Prupe.5G179600 Prunus persica HOM05D003533 ORTHO05D004009 1.5e-08 62.8 69 52.2
A08p30040 Brassica napus HOM05D003533 ORTHO05D004009 1.9e-08 62.4 75 45.3
BraA08t34939Z Brassica rapa HOM05D003533 ORTHO05D004009 1.9e-08 62.4 75 45.3
COL.COLO4_21432 Corchorus olitorius HOM05D003533 ORTHO05D004009 1.9e-08 62.4 81 46.9
FAN17G1844 Fragaria x ananassa HOM05D003533 ORTHO05D004009 1.9e-08 62.4 68 51.5
Nitab4.5_0002312g0110 Nicotiana tabacum HOM05D003533 ORTHO05D004009 1.9e-08 62.4 88 43.2
Sp5g13860 Schrenkiella parvula HOM05D003533 ORTHO05D004009 2.5e-08 62.0 73 43.8
CAN.G159.12 Capsicum annuum HOM05D003533 ORTHO05D004009 3.3e-08 61.6 80 45.0
Duzib084G0973 Durio zibethinus HOM05D003533 ORTHO05D004009 3.3e-08 61.6 76 47.4
ECA247G1125 Erigeron canadensis HOM05D003533 ORTHO05D004009 3.3e-08 61.6 81 43.2
Glyma.05G033600 Glycine max HOM05D003533 ORTHO05D004009 3.3e-08 61.6 72 50.0
PSO013G0048 Papaver somniferum HOM05D003533 ORTHO05D004009 3.3e-08 61.6 81 48.1
TAR622G1413 Trochodendron aralioides HOM05D003533 ORTHO05D004009 3.3e-08 61.6 82 46.3
AL5G27512 Arabidopsis lyrata HOM05D003533 ORTHO05D004009 4.3e-08 61.2 73 45.2
BcaB07g31922 Brassica carinata HOM05D003533 ORTHO05D004009 4.3e-08 61.2 84 41.7
Phvul.003G196800 Phaseolus vulgaris HOM05D003533 ORTHO05D004009 4.3e-08 61.2 72 50.0
vmacro16587 Vaccinium macrocarpon HOM05D003533 ORTHO05D004009 4.3e-08 61.2 78 44.9
FAN22G0766 Fragaria x ananassa HOM05D003533 ORTHO05D004009 5.7e-08 60.8 71 49.3
TWI15G0955 Tripterygium wilfordii HOM05D003533 ORTHO05D004009 5.7e-08 60.8 83 43.4
Lsat_1_v5_gn_1_11220 Lactuca sativa HOM05D003533 ORTHO05D004009 7.4e-08 60.5 76 44.7
Manes.06G100300 Manihot esculenta HOM05D003533 ORTHO05D004009 7.4e-08 60.5 87 46.0
Peaxi162Scf01141g00003 Petunia axillaris HOM05D003533 ORTHO05D004009 7.4e-08 60.5 85 43.5
Hma1.2p1_0002F.1_g002860 Hydrangea macrophylla HOM05D003533 ORTHO05D004009 9.7e-08 60.1 69 49.3
BcaB03g14468 Brassica carinata HOM05D003533 ORTHO05D004009 1.3e-07 59.7 85 43.5
ECA247G3580 Erigeron canadensis HOM05D003533 ORTHO05D004009 1.3e-07 59.7 75 45.3
Lsat_1_v5_gn_1_12101 Lactuca sativa HOM05D003533 ORTHO05D004009 1.3e-07 59.7 91 41.8
MBI14_g31148_MAGBIO Magnolia biondii HOM05D003533 ORTHO05D011084 1.3e-07 59.7 68 47.1
Manes.14G070400 Manihot esculenta HOM05D003533 ORTHO05D004009 1.3e-07 59.7 82 48.8
RcHm_v2.0_Chr4g0444801 Rosa chinensis HOM05D003533 ORTHO05D004009 1.3e-07 59.7 71 50.7
TWI81G0654 Tripterygium wilfordii HOM05D003533 ORTHO05D004009 1.3e-07 59.7 82 43.9
BcaB03g12939 Brassica carinata HOM05D003533 ORTHO05D004009 1.7e-07 59.3 79 43.0
CSS0013527 Camellia sinensis var. sinensis HOM05D003533 ORTHO05D004009 1.7e-07 59.3 91 42.9
CSS0016862 Camellia sinensis var. sinensis HOM05D003533 ORTHO05D004009 1.7e-07 59.3 91 42.9
CARHR019640 Cardamine hirsuta HOM05D003533 ORTHO05D004009 1.7e-07 59.3 78 42.3
CiPaw.06G076000 Carya illinoinensis HOM05D003533 ORTHO05D004009 1.7e-07 59.3 79 43.0
CiPaw.06G076200 Carya illinoinensis HOM05D003533 ORTHO05D004009 1.7e-07 59.3 79 43.0
PGSC0003DMG400022647 Solanum tuberosum HOM05D003533 ORTHO05D004009 1.7e-07 59.3 83 42.2
CiPaw.06G076300 Carya illinoinensis HOM05D003533 ORTHO05D004009 2.2e-07 58.9 71 47.9
CiPaw.06G076100 Carya illinoinensis HOM05D003533 ORTHO05D004009 2.8e-07 58.5 79 43.0
Glyma.17G093500 Glycine max HOM05D003533 ORTHO05D004009 2.8e-07 58.5 75 48.0
Oeu005690.1 Olea europaea HOM05D003533 ORTHO05D004009 2.8e-07 58.5 83 44.6
ATR0712G042 Amborella trichopoda HOM05D003533 ORTHO05D004009 3.7e-07 58.2 80 43.8
A06p15230 Brassica napus HOM05D003533 ORTHO05D004009 3.7e-07 58.2 84 39.3
BraA06t24637Z Brassica rapa HOM05D003533 ORTHO05D004009 3.7e-07 58.2 84 39.3
CDE07G1253 Ceratophyllum demersum HOM05D000502 ORTHO05D000356 4.8e-07 57.8 68 44.1
FAN07G1024 Fragaria x ananassa HOM05D003533 ORTHO05D004009 4.8e-07 57.8 71 47.9
A09p59550 Brassica napus HOM05D003533 ORTHO05D004009 6.3e-07 57.4 83 39.8
Lsat_1_v5_gn_1_11280 Lactuca sativa HOM05D003533 ORTHO05D004009 6.3e-07 57.4 76 44.7
Nitab4.5_0002059g0090 Nicotiana tabacum HOM05D003533 ORTHO05D004009 6.3e-07 57.4 82 41.5
Lalb_Chr12g0201351 Lupinus albus HOM05D003533 ORTHO05D004009 8.2e-07 57.0 73 45.2
AL1G31580 Arabidopsis lyrata HOM05D003533 ORTHO05D004009 1.1e-06 56.6 87 40.2
BcaC07g41276 Brassica carinata HOM05D003533 ORTHO05D004009 1.1e-06 56.6 85 38.8
FAN13G2147 Fragaria x ananassa HOM05D003533 ORTHO05D004009 1.1e-06 56.6 78 47.4
Lj4g0015145 Lotus japonicus HOM05D003533 ORTHO05D004009 1.1e-06 56.6 77 42.9
Oeu017591.1 Olea europaea HOM05D003533 ORTHO05D004009 1.1e-06 56.6 75 44.0
Aa31LG4G16780 Aethionema arabicum HOM05D003533 ORTHO05D004009 1.4e-06 56.2 77 39.0
CSS0048422 Camellia sinensis var. sinensis HOM05D003533 ORTHO05D004009 1.4e-06 56.2 75 41.3
Carub.0005s1428 Capsella rubella HOM05D003533 ORTHO05D004009 1.4e-06 56.2 73 41.1
CiPaw.12G022900 Carya illinoinensis HOM05D003533 ORTHO05D004009 1.4e-06 56.2 76 46.1
Medtr4g106500 Medicago truncatula HOM05D003533 ORTHO05D004009 1.4e-06 56.2 82 45.1
MBI14_g31147_MAGBIO Magnolia biondii HOM05D003533 ORTHO05D004009 1.8e-06 55.8 76 44.7
Rhsim12G0161400 Rhododendron simsii HOM05D003533 ORTHO05D004009 1.8e-06 55.8 78 43.6
TPR.G37447 Trifolium pratense HOM05D003533 ORTHO05D004009 1.8e-06 55.8 77 44.2
ATR0712G093 Amborella trichopoda HOM05D003533 ORTHO05D004009 2.4e-06 55.5 77 40.3
AT1G19020 Arabidopsis thaliana HOM05D003533 ORTHO05D004009 2.4e-06 55.5 87 39.1
CANSAT54G2961 Cannabis sativa HOM05D003533 ORTHO05D004009 2.4e-06 55.5 66 47.0
Nitab4.5_0003386g0040 Nicotiana tabacum HOM05D003533 ORTHO05D004009 3.1e-06 55.1 79 43.0
Sp1g16980 Schrenkiella parvula HOM05D003533 ORTHO05D004009 3.1e-06 55.1 89 37.1
Thhalv10010873m.g Eutrema salsugineum HOM05D003533 ORTHO05D004009 4.1e-06 54.7 75 40.0
Nitab4.5_0002312g0100 Nicotiana tabacum HOM05D003533 ORTHO05D004009 4.1e-06 54.7 83 39.8
Thhalv10009213m.g Eutrema salsugineum HOM05D003533 ORTHO05D004009 5.3e-06 54.3 87 37.9
HanXRQChr09g0237871 Helianthus annuus HOM05D003533 ORTHO05D004009 6.9e-06 53.9 78 42.3
Sed0002579 Sechium edule HOM05D003533 ORTHO05D004009 6.9e-06 53.9 79 44.3
Sc04g0002090 Simmondsia chinensis HOM05D003533 ORTHO05D004009 6.9e-06 53.9 83 39.8
Aa31LG7G3800 Aethionema arabicum HOM05D006783 ORTHO05D008330 9.1e-06 53.5 72 41.7
MD16G1084900 Malus domestica HOM05D003533 ORTHO05D004009 9.1e-06 53.5 83 43.4


User provided reference genes

Program Settings