Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10033198m.g Citrus clementina HOM05D006885 ORTHO05D008606 1.6e-42 175.6 88 100.0
Atru.chr11.2397 Acer truncatum HOM05D006885 ORTHO05D008606 5.5e-30 134.0 79 87.3
Hma1.2p1_0459F.1_g157320 Hydrangea macrophylla HOM05D006885 ORTHO05D008606 1.2e-29 132.9 74 87.8
Gorai.012G125400 Gossypium raimondii HOM05D006885 ORTHO05D008606 6.7e-28 127.1 73 83.6
Ca_06520_v3 Cicer arietinum L. HOM05D006885 ORTHO05D008606 1.9e-27 125.6 67 91.0
Duzib052G0936 Durio zibethinus HOM05D006885 ORTHO05D008606 1.9e-27 125.6 70 85.7
Gohir.D04G140400 Gossypium hirsutum HOM05D006885 ORTHO05D008606 1.9e-27 125.6 73 82.2
RcHm_v2.0_Chr4g0429451 Rosa chinensis HOM05D006885 ORTHO05D008606 1.9e-27 125.6 63 93.7
TPR.G15605 Trifolium pratense HOM05D006885 ORTHO05D008606 1.9e-27 125.6 68 88.2
CiPaw.05G104600 Carya illinoinensis HOM05D006885 ORTHO05D008606 2.5e-27 125.2 74 85.1
Manes.11G080000 Manihot esculenta HOM05D006885 ORTHO05D008606 2.5e-27 125.2 78 80.8
Cfa008736 Carpinus fangiana HOM05D000120 ORTHO05D000068 3.3e-27 124.8 78 83.3
CiPaw.06G106900 Carya illinoinensis HOM05D006885 ORTHO05D008606 4.3e-27 124.4 78 82.1
Dinv33305 Davidia involucrata HOM05D006885 ORTHO05D008606 4.3e-27 124.4 61 95.1
FvH4_4g23120 Fragaria vesca HOM05D006885 ORTHO05D008606 4.3e-27 124.4 67 88.1
FAN07G1762 Fragaria x ananassa HOM05D006885 ORTHO05D008606 4.3e-27 124.4 67 88.1
FAN12G2334 Fragaria x ananassa HOM05D006885 ORTHO05D008606 4.3e-27 124.4 67 88.1
FAN17G2783 Fragaria x ananassa HOM05D006885 ORTHO05D008606 4.3e-27 124.4 67 88.1
Gohir.A04G101300 Gossypium hirsutum HOM05D006885 ORTHO05D008606 4.3e-27 124.4 73 82.2
LjContig00312_ERROPOS870357g0004846 Lotus japonicus HOM05D006885 ORTHO05D008606 5.6e-27 124.0 68 88.2
TAR629G2182 Trochodendron aralioides HOM05D006885 ORTHO05D008606 5.6e-27 124.0 69 87.0
ClCG06G001860 Citrullus lanatus HOM05D006885 ORTHO05D008606 7.4e-27 123.6 63 92.1
Peaxi162Scf00962g00024 Petunia axillaris HOM05D006885 ORTHO05D008606 7.4e-27 123.6 65 90.8
CAN.G1264.4 Capsicum annuum HOM05D006885 ORTHO05D008606 1.6e-26 122.5 65 92.3
Duzib248G1150 Durio zibethinus HOM05D006885 ORTHO05D008606 2.1e-26 122.1 72 81.9
PGR119G0226 Punica granatum HOM05D006885 ORTHO05D008606 2.1e-26 122.1 75 82.7
CANSAT01G1896 Cannabis sativa HOM05D006885 ORTHO05D008606 2.8e-26 121.7 64 90.6
Eucgr.B03538 Eucalyptus grandis HOM05D006885 ORTHO05D008606 3.7e-26 121.3 76 80.3
Prupe.1G220300 Prunus persica HOM05D006885 ORTHO05D008606 3.7e-26 121.3 79 78.5
Sed0025765 Sechium edule HOM05D006885 ORTHO05D008606 3.7e-26 121.3 63 87.3
CsaV3_6G007910 Cucumis sativus L. HOM05D006885 ORTHO05D008606 4.8e-26 120.9 63 90.5
Actinidia19564 Actinidia chinensis HOM05D006885 ORTHO05D008606 6.2e-26 120.6 77 81.8
Manes.04G090052 Manihot esculenta HOM05D006885 ORTHO05D008606 8.2e-26 120.2 78 78.2
Medtr3g074700 Medicago truncatula HOM05D006885 ORTHO05D008606 8.2e-26 120.2 68 83.8
Sabra16G0207500 Salix brachista HOM05D006885 ORTHO05D008606 8.2e-26 120.2 67 88.1
TWI75G1759 Tripterygium wilfordii HOM05D006885 ORTHO05D008606 8.2e-26 120.2 78 75.6
ECA232G0525 Erigeron canadensis HOM05D006885 ORTHO05D008606 1.1e-25 119.8 77 79.2
Sopen01g005380 Solanum pennellii HOM05D006885 ORTHO05D008606 1.1e-25 119.8 65 87.7
Nitab4.5_0000913g0010 Nicotiana tabacum HOM05D006885 ORTHO05D008606 1.8e-25 119.0 58 96.6
Oeu011334.1 Olea europaea HOM05D006885 ORTHO05D008606 1.8e-25 119.0 59 94.9
Potri.001G325000 Populus trichocarpa HOM05D006885 ORTHO05D008606 1.8e-25 119.0 67 86.6
PGSC0003DMG400011888 Solanum tuberosum HOM05D006885 ORTHO05D008606 2.4e-25 118.6 65 89.2
MSTRG.471 Avicennia marina HOM05D006885 ORTHO05D008606 3.1e-25 118.2 62 90.3
Nn2g15930 Nelumbo nucifera HOM05D006885 ORTHO05D008606 3.1e-25 118.2 73 79.5
Lsat_1_v5_gn_4_1780 Lactuca sativa HOM05D006885 ORTHO05D008606 4.0e-25 117.9 65 86.2
Dinv25633 Davidia involucrata HOM05D006885 ORTHO05D008606 6.9e-25 117.1 78 75.6
Oeu044483.1 Olea europaea HOM05D006885 ORTHO05D008606 6.9e-25 117.1 57 96.5
DCAR_024641 Daucus carota HOM05D006885 ORTHO05D008606 9.0e-25 116.7 67 79.1
Migut.K00992 Erythranthe guttata HOM05D006885 ORTHO05D008606 1.2e-24 116.3 66 84.8
Phvul.008G000900 Phaseolus vulgaris HOM05D006885 ORTHO05D008606 1.2e-24 116.3 57 94.7
Aqoxy5G03235 Aquilegia oxysepala HOM05D006885 ORTHO05D008606 2.6e-24 115.2 80 76.2
MD13G1125100 Malus domestica HOM05D006885 ORTHO05D008606 4.5e-24 114.4 79 75.9
Psat0s1880g0200 Pisum sativum HOM05D006885 ORTHO05D008606 4.5e-24 114.4 68 80.9
Lj6A834T26 Lonicera japonica HOM05D006885 ORTHO05D008606 5.8e-24 114.0 76 76.3
MD16G1125900 Malus domestica HOM05D006885 ORTHO05D008606 5.8e-24 114.0 79 75.9
Cc11_g17420 Coffea canephora HOM05D006885 ORTHO05D008606 1.7e-23 112.5 71 83.1
Thecc.02G198000 Theobroma cacao HOM05D006885 ORTHO05D008606 1.7e-23 112.5 78 76.9
AUR62005687 Chenopodium quinoa HOM05D006885 ORTHO05D008606 2.9e-23 111.7 59 86.4
AUR62028871 Chenopodium quinoa HOM05D006885 ORTHO05D008606 2.9e-23 111.7 59 86.4
Haze_11752 Corylus avellana HOM05D006885 ORTHO05D008606 6.5e-23 110.5 111 59.5
unitig_26.g10421 Utricularia gibba HOM05D006885 ORTHO05D008606 6.5e-23 110.5 65 81.5
Glyma.08G361800 Glycine max HOM05D006885 ORTHO05D008606 1.1e-22 109.8 60 88.3
THA.LOC104825479 Tarenaya hassleriana HOM05D006885 ORTHO05D008606 1.9e-22 109.0 62 87.1
Glyma.18G300000 Glycine max HOM05D006885 ORTHO05D008606 3.2e-22 108.2 54 94.4
GSVIVG01000942001 Vitis vinifera HOM05D006885 ORTHO05D008606 7.1e-22 107.1 53 96.2
CARHR027030 Cardamine hirsuta HOM05D006885 ORTHO05D008606 2.1e-21 105.5 64 79.7
Aa31LG7G9990 Aethionema arabicum HOM05D006885 ORTHO05D008606 2.7e-21 105.1 73 71.2
Lalb_Chr10g0091171 Lupinus albus HOM05D006885 ORTHO05D008606 4.6e-21 104.4 57 87.7
Carub.0001s2598 Capsella rubella HOM05D006885 ORTHO05D008606 7.9e-21 103.6 54 90.7
Sp1g23670 Schrenkiella parvula HOM05D006885 ORTHO05D008606 7.9e-21 103.6 52 94.2
AT1G27435 Arabidopsis thaliana HOM05D006885 ORTHO05D008606 1.0e-20 103.2 71 71.8
BcaB03g13983 Brassica carinata HOM05D006885 ORTHO05D008606 1.0e-20 103.2 52 92.3
AL1G40850 Arabidopsis lyrata HOM05D006885 ORTHO05D008606 1.3e-20 102.8 54 88.9
BcaC01g06952 Brassica carinata HOM05D006885 ORTHO05D008606 2.3e-20 102.1 52 90.4
A07p11750 Brassica napus HOM05D006885 ORTHO05D008606 2.3e-20 102.1 52 90.4
BraA07t28960Z Brassica rapa HOM05D006885 ORTHO05D008606 2.3e-20 102.1 62 79.0
HPP92_021686 Vanilla planifolia HOM05D006885 ORTHO05D008606 2.3e-20 102.1 70 68.6
BcaC06g35293 Brassica carinata HOM05D006885 ORTHO05D008606 3.0e-20 101.7 79 72.2
A08p26290 Brassica napus HOM05D006885 ORTHO05D008606 3.0e-20 101.7 66 74.2
C07p17740 Brassica napus HOM05D006885 ORTHO05D008606 3.0e-20 101.7 79 72.2
BolC3t19669H Brassica oleracea HOM05D006885 ORTHO05D008606 3.0e-20 101.7 66 74.2
BolC7t42280H Brassica oleracea HOM05D006885 ORTHO05D008606 3.0e-20 101.7 79 72.2
BraA08t34580Z Brassica rapa HOM05D006885 ORTHO05D008606 3.0e-20 101.7 66 74.2
SalBow2G1383 Salvia bowleyana HOM05D006885 ORTHO05D008606 3.9e-20 101.3 77 67.5
ATR0582G111 Amborella trichopoda HOM05D006885 ORTHO05D008606 5.1e-20 100.9 67 79.1
PSO017G7113 Papaver somniferum HOM05D006885 ORTHO05D008606 5.1e-20 100.9 80 67.5
CDE05G1244 Ceratophyllum demersum HOM05D006885 ORTHO05D008606 1.5e-19 99.4 61 80.3
SGA_v2.0_scaffold9G04792 Striga asiatica HOM05D006885 ORTHO05D008606 1.5e-19 99.4 93 58.1
Thhalv10009236m.g Eutrema salsugineum HOM05D006885 ORTHO05D008606 1.9e-19 99.0 81 67.9
HPP92_021628 Vanilla planifolia HOM05D006885 ORTHO05D008606 1.9e-19 99.0 70 67.1
EL10Ac6g13573 Beta vulgaris HOM05D006885 ORTHO05D008606 3.3e-19 98.2 65 73.8
BcaC01g01613 Brassica carinata HOM05D006885 ORTHO05D008606 5.7e-19 97.4 84 63.1
C03p73770 Brassica napus HOM05D006885 ORTHO05D008606 9.7e-19 96.7 84 63.1
SHI04153 Sapria himalayana HOM05D006885 ORTHO05D008606 2.8e-18 95.1 70 71.4
Dinv09126 Davidia involucrata HOM05D006885 ORTHO05D008606 3.7e-18 94.7 50 90.0
SalBow1G0427 Salvia bowleyana HOM05D006885 ORTHO05D008606 4.8e-18 94.4 61 75.4
Zm00001eb133070 Zea mays HOM05D006885 ORTHO05D008606 4.8e-18 94.4 67 64.2
QL03p050754 Quercus lobata HOM05D006885 ORTHO05D008606 6.3e-18 94.0 44 100.0
MELO3C035240.2 Cucumis melo HOM05D006885 ORTHO05D008606 1.4e-17 92.8 65 72.3
Zm00001eb408880 Zea mays HOM05D006885 ORTHO05D008606 1.8e-17 92.4 54 75.9
CSS0038255 Camellia sinensis var. sinensis HOM05D006885 ORTHO05D008606 3.1e-17 91.7 44 97.7
Hund25491 Selenicereus undatus HOM05D006885 ORTHO05D008606 2.6e-16 88.6 44 93.2
Sc11g0000250 Simmondsia chinensis HOM05D006885 ORTHO05D008606 2.6e-16 88.6 42 97.6
Ah.03g135790 Amaranthus hybridus HOM05D006885 ORTHO05D008606 4.5e-16 87.8 44 90.9
HanXRQChr03g0067371 Helianthus annuus HOM05D006885 ORTHO05D008606 7.7e-16 87.0 45 88.9
MBI12_g28748_MAGBIO Magnolia biondii HOM05D006885 ORTHO05D008606 1.4e-14 82.8 65 69.2
Gorai.001G210600 Gossypium raimondii HOM05D006885 ORTHO05D008606 3.6e-13 78.2 53 73.6
Gohir.D07G189020 Gossypium hirsutum HOM05D006885 ORTHO05D008606 1.0e-12 76.6 53 71.7
CSS0039361 Camellia sinensis var. sinensis HOM05D006885 ORTHO05D008606 1.4e-12 76.3 37 97.3
Pp3c6_10000 Physcomitrium patens HOM05D006885 ORTHO05D008606 2.2e-10 68.9 70 55.7
Gohir.A06G101502 Gossypium hirsutum HOM05D006885 ORTHO05D008606 8.2e-10 67.0 46 67.4
TPR.G7690 Trifolium pratense HOM05D006885 ORTHO05D008606 8.2e-10 67.0 30 96.7
Gohir.D02G113400 Gossypium hirsutum HOM05D006885 ORTHO05D008606 6.9e-09 63.9 34 85.3
Gorai.005G128300 Gossypium raimondii HOM05D006885 ORTHO05D008606 6.9e-09 63.9 34 85.3
AagrBONN_evm.TU.Sc2ySwM_362.2152 Anthoceros agrestis HOM05D006885 ORTHO05D008606 6.5e-07 57.4 57 56.1
Mapoly0027s0032 Marchantia polymorpha HOM05D006885 ORTHO05D008606 1.1e-06 56.6 58 56.9


User provided reference genes

Program Settings