Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10033188m.g Citrus clementina HOM05D001742 ORTHO05D001689 2.8e-45 184.9 92 100.0
Ciclev10032428m.g Citrus clementina HOM05D001742 ORTHO05D001689 2.1e-16 89.0 49 89.8
Haze_13617 Corylus avellana HOM05D001742 ORTHO05D001689 8.3e-13 77.0 47 76.6
Sabra12G0090800 Salix brachista HOM05D001742 ORTHO05D001689 1.1e-12 76.6 67 53.7
Potri.012G118100 Populus trichocarpa HOM05D001742 ORTHO05D001689 1.8e-12 75.9 65 55.4
Potri.015G113200 Populus trichocarpa HOM05D001742 ORTHO05D001689 1.8e-12 75.9 50 66.0
Cfa023017 Carpinus fangiana HOM05D001742 ORTHO05D001689 4.1e-12 74.7 47 74.5
RcHm_v2.0_Chr5g0019511 Rosa chinensis HOM05D001742 ORTHO05D001689 5.4e-12 74.3 50 66.0
Sabra12G0087500 Salix brachista HOM05D001742 ORTHO05D001689 5.4e-12 74.3 67 52.2
Thecc.01G167300 Theobroma cacao HOM05D001742 ORTHO05D001689 5.4e-12 74.3 50 68.0
Eucgr.A02032 Eucalyptus grandis HOM05D001742 ORTHO05D001689 7.0e-12 73.9 49 73.5
FvH4_3g11930 Fragaria vesca HOM05D001742 ORTHO05D001689 7.0e-12 73.9 50 66.0
FAN16G0700 Fragaria x ananassa HOM05D001742 ORTHO05D001689 7.0e-12 73.9 50 66.0
FAN25G0431 Fragaria x ananassa HOM05D001742 ORTHO05D001689 7.0e-12 73.9 50 66.0
GSVIVG01020826001 Vitis vinifera HOM05D001742 ORTHO05D001689 7.0e-12 73.9 49 69.4
GSVIVG01026279001 Vitis vinifera HOM05D001742 ORTHO05D001689 9.2e-12 73.6 50 64.0
CiPaw.09G152400 Carya illinoinensis HOM05D001742 ORTHO05D001689 1.6e-11 72.8 67 53.7
TWI38G2123 Tripterygium wilfordii HOM05D001742 ORTHO05D001689 1.6e-11 72.8 50 66.0
Aqoxy1G01451 Aquilegia oxysepala HOM05D001742 ORTHO05D001689 2.0e-11 72.4 50 64.0
Sabra15G0134800 Salix brachista HOM05D001742 ORTHO05D001689 2.0e-11 72.4 50 64.0
PGR042G0740 Punica granatum HOM05D001742 ORTHO05D001689 2.7e-11 72.0 48 66.7
Duzib192G0841 Durio zibethinus HOM05D001742 ORTHO05D001689 3.5e-11 71.6 50 64.0
Gohir.D09G007700 Gossypium hirsutum HOM05D001742 ORTHO05D001689 4.5e-11 71.2 50 66.0
Gorai.006G009300 Gossypium raimondii HOM05D001742 ORTHO05D001689 4.5e-11 71.2 50 66.0
Potri.002G056600 Populus trichocarpa HOM05D001742 ORTHO05D001689 4.5e-11 71.2 50 66.0
Dinv01088 Davidia involucrata HOM05D001742 ORTHO05D001689 5.9e-11 70.9 50 62.0
SHI10462 Sapria himalayana HOM05D001742 ORTHO05D001689 5.9e-11 70.9 48 68.8
TAR624G0849 Trochodendron aralioides HOM05D001742 ORTHO05D001689 5.9e-11 70.9 50 62.0
arahy.Tifrunner.gnm1.ann1.SQ9VPX Arachis hypogaea HOM05D001742 ORTHO05D001689 7.8e-11 70.5 50 64.0
arahy.Tifrunner.gnm1.ann1.XF8MQ5 Arachis hypogaea HOM05D001742 ORTHO05D001689 7.8e-11 70.5 50 64.0
Gohir.A10G046000 Gossypium hirsutum HOM05D001742 ORTHO05D001689 7.8e-11 70.5 67 52.2
Gohir.D10G047200 Gossypium hirsutum HOM05D001742 ORTHO05D001689 7.8e-11 70.5 67 52.2
Gorai.011G050300 Gossypium raimondii HOM05D001742 ORTHO05D001689 7.8e-11 70.5 67 52.2
Lalb_Chr04g0248971 Lupinus albus HOM05D001742 ORTHO05D001689 7.8e-11 70.5 50 64.0
Solyc02g069350.4 Solanum lycopersicum HOM05D001742 ORTHO05D001689 7.8e-11 70.5 47 68.1
Sopen02g018500 Solanum pennellii HOM05D001742 ORTHO05D001689 7.8e-11 70.5 47 68.1
PGSC0003DMG400021208 Solanum tuberosum HOM05D001742 ORTHO05D001689 7.8e-11 70.5 47 68.1
Thecc.06G136900 Theobroma cacao HOM05D001742 ORTHO05D001689 7.8e-11 70.5 47 68.1
Aa31LG6G2190 Aethionema arabicum HOM05D001742 ORTHO05D001689 1.0e-10 70.1 47 66.0
COL.COLO4_30944 Corchorus olitorius HOM05D001742 ORTHO05D001689 1.0e-10 70.1 47 68.1
LjContig00049g0023854 Lotus japonicus HOM05D001742 ORTHO05D001689 1.0e-10 70.1 49 65.3
Rhsim13G0128500 Rhododendron simsii HOM05D001742 ORTHO05D001689 1.0e-10 70.1 50 60.0
vmacro03496 Vaccinium macrocarpon HOM05D001742 ORTHO05D001689 1.0e-10 70.1 50 62.0
Ciclev10016228m.g Citrus clementina HOM05D001742 ORTHO05D001689 1.3e-10 69.7 65 52.3
Hma1.2p1_0365F.1_g136720 Hydrangea macrophylla HOM05D001742 ORTHO05D001689 1.3e-10 69.7 50 64.0
Medtr5g090550 Medicago truncatula HOM05D001742 ORTHO05D001689 1.3e-10 69.7 49 65.3
Psat2g019040 Pisum sativum HOM05D001742 ORTHO05D001689 1.3e-10 69.7 49 65.3
TWI38G0399 Tripterygium wilfordii HOM05D001742 ORTHO05D001689 1.3e-10 69.7 47 66.0
TAR626G0148 Trochodendron aralioides HOM05D001742 ORTHO05D001689 1.3e-10 69.7 50 60.0
Ca_06240_v3 Cicer arietinum L. HOM05D001742 ORTHO05D001689 1.7e-10 69.3 49 63.3
MD10G1237000 Malus domestica HOM05D001742 ORTHO05D001689 1.7e-10 69.3 50 64.0
TPR.G8791 Trifolium pratense HOM05D001742 ORTHO05D001689 1.7e-10 69.3 47 68.1
Cpa.g.sc135.44 Carica papaya HOM05D001742 ORTHO05D001689 2.3e-10 68.9 47 66.0
ClCG01G009070 Citrullus lanatus HOM05D001742 ORTHO05D001689 2.3e-10 68.9 47 63.8
COL.COLO4_08653 Corchorus olitorius HOM05D001742 ORTHO05D001689 2.3e-10 68.9 50 66.0
Glyma.02G283000 Glycine max HOM05D001742 ORTHO05D001689 2.3e-10 68.9 49 65.3
MBI18_g29061_MAGBIO Magnolia biondii HOM05D001742 ORTHO05D001689 2.3e-10 68.9 50 62.0
Nn7g38043 Nelumbo nucifera HOM05D001742 ORTHO05D001689 2.3e-10 68.9 50 60.0
Nitab4.5_0022642g0010 Nicotiana tabacum HOM05D001742 ORTHO05D001689 2.3e-10 68.9 47 66.0
Oeu063113.2 Olea europaea HOM05D001742 ORTHO05D001689 2.3e-10 68.9 50 60.0
Phvul.008G196100 Phaseolus vulgaris HOM05D001742 ORTHO05D001689 2.3e-10 68.9 49 63.3
Sabra02G0045900 Salix brachista HOM05D001742 ORTHO05D001689 2.3e-10 68.9 50 64.0
Actinidia04413 Actinidia chinensis HOM05D001742 ORTHO05D001689 2.9e-10 68.6 50 62.0
Manes.02G088800 Manihot esculenta HOM05D001742 ORTHO05D001689 2.9e-10 68.6 50 66.0
Prupe.4G107300 Prunus persica HOM05D001742 ORTHO05D001689 2.9e-10 68.6 50 64.0
Sabra05G0156600 Salix brachista HOM05D001742 ORTHO05D001689 2.9e-10 68.6 50 64.0
TWI14G1415 Tripterygium wilfordii HOM05D001742 ORTHO05D001689 2.9e-10 68.6 50 62.0
Gohir.A05G144000 Gossypium hirsutum HOM05D001742 ORTHO05D001689 3.8e-10 68.2 47 63.8
Gohir.D05G146300 Gossypium hirsutum HOM05D001742 ORTHO05D001689 3.8e-10 68.2 50 62.0
Gorai.009G150200 Gossypium raimondii HOM05D001742 ORTHO05D001689 3.8e-10 68.2 50 62.0
AL7G34410 Arabidopsis lyrata HOM05D001742 ORTHO05D001689 5.0e-10 67.8 47 61.7
CsaV3_1G046450 Cucumis sativus L. HOM05D001742 ORTHO05D001689 5.0e-10 67.8 47 63.8
Glyma.14G031400 Glycine max HOM05D001742 ORTHO05D001689 5.0e-10 67.8 49 63.3
Lj2C355T3 Lonicera japonica HOM05D001742 ORTHO05D001689 5.0e-10 67.8 50 62.0
Nitab4.5_0005797g0060 Nicotiana tabacum HOM05D001742 ORTHO05D001689 5.0e-10 67.8 47 66.0
Peaxi162Scf00195g00009 Petunia axillaris HOM05D001742 ORTHO05D001689 5.0e-10 67.8 50 60.0
Potri.005G206000 Populus trichocarpa HOM05D001742 ORTHO05D001689 5.0e-10 67.8 50 64.0
Sc24g0003560 Simmondsia chinensis HOM05D001742 ORTHO05D001689 5.0e-10 67.8 50 60.0
MELO3C021799.2 Cucumis melo HOM05D001742 ORTHO05D001689 6.6e-10 67.4 47 61.7
VMungo0647G0866 Vigna mungo HOM05D001742 ORTHO05D001689 6.6e-10 67.4 49 61.2
Gohir.A09G008300 Gossypium hirsutum HOM05D001742 ORTHO05D001689 8.6e-10 67.0 50 62.0
Lalb_Chr10g0106521 Lupinus albus HOM05D001742 ORTHO05D001689 8.6e-10 67.0 50 62.0
MD05G1256500 Malus domestica HOM05D001742 ORTHO05D001689 8.6e-10 67.0 50 60.0
Atru.chr6.2022 Acer truncatum HOM05D001742 ORTHO05D001689 1.1e-09 66.6 47 70.2
CARHR226450 Cardamine hirsuta HOM05D001742 ORTHO05D001689 1.1e-09 66.6 51 58.8
Haze_06009 Corylus avellana HOM05D001742 ORTHO05D001689 1.1e-09 66.6 50 58.0
Duzib160G0775 Durio zibethinus HOM05D001742 ORTHO05D001689 1.1e-09 66.6 50 60.0
Sed0017032 Sechium edule HOM05D001742 ORTHO05D001689 1.1e-09 66.6 47 61.7
AUR62038572 Chenopodium quinoa HOM05D001742 ORTHO05D001689 1.5e-09 66.2 67 47.8
Manes.16G051300 Manihot esculenta HOM05D001742 ORTHO05D001689 1.5e-09 66.2 67 50.7
Duzib264G0736 Durio zibethinus HOM05D001742 ORTHO05D001689 1.9e-09 65.9 50 60.0
Sed0026949 Sechium edule HOM05D001742 ORTHO05D001689 1.9e-09 65.9 47 61.7
AUR62034010 Chenopodium quinoa HOM05D001742 ORTHO05D001689 2.5e-09 65.5 50 56.0
Gohir.A11G061600 Gossypium hirsutum HOM05D001742 ORTHO05D001689 2.5e-09 65.5 50 62.0
Gohir.D11G065500 Gossypium hirsutum HOM05D001742 ORTHO05D001689 2.5e-09 65.5 50 62.0
Medtr3g450410 Medicago truncatula HOM05D001742 ORTHO05D001689 2.5e-09 65.5 46 63.0
A08p14480 Brassica napus HOM05D001742 ORTHO05D001689 3.3e-09 65.1 47 59.6
BraA08t33436Z Brassica rapa HOM05D001742 ORTHO05D001689 3.3e-09 65.1 47 59.6
Lj6g0022827 Lotus japonicus HOM05D001742 ORTHO05D001689 4.3e-09 64.7 46 65.2
CANSAT64G0602 Cannabis sativa HOM05D001742 ORTHO05D001689 5.6e-09 64.3 47 63.8
Gohir.D10G129600 Gossypium hirsutum HOM05D001742 ORTHO05D001689 5.6e-09 64.3 47 63.8
Gorai.011G142900 Gossypium raimondii HOM05D001742 ORTHO05D001689 5.6e-09 64.3 47 63.8
SalBow7G1418 Salvia bowleyana HOM05D001742 ORTHO05D001689 5.6e-09 64.3 50 68.0
Hund26561 Selenicereus undatus HOM05D001742 ORTHO05D001689 5.6e-09 64.3 50 56.0
BcaC01g00626 Brassica carinata HOM05D001742 ORTHO05D001689 7.3e-09 63.9 47 57.4
Duzib147G1189 Durio zibethinus HOM05D001742 ORTHO05D001689 7.3e-09 63.9 50 60.0
Migut.M01960 Erythranthe guttata HOM05D001742 ORTHO05D001689 7.3e-09 63.9 47 57.4
Gohir.A05G380900 Gossypium hirsutum HOM05D001742 ORTHO05D001689 7.3e-09 63.9 50 62.0
Gorai.007G070700 Gossypium raimondii HOM05D001742 ORTHO05D001689 7.3e-09 63.9 50 60.0
Gorai.012G039200 Gossypium raimondii HOM05D001742 ORTHO05D001689 7.3e-09 63.9 50 62.0
C03p82500 Brassica napus HOM05D001742 ORTHO05D001689 9.5e-09 63.5 47 57.4
BolC3t20504H Brassica oleracea HOM05D001742 ORTHO05D001689 9.5e-09 63.5 47 57.4
ECA246G5240 Erigeron canadensis HOM05D001742 ORTHO05D001689 9.5e-09 63.5 47 61.7
Oeu000473.1 Olea europaea HOM05D001742 ORTHO05D001689 9.5e-09 63.5 48 58.3
Nitab4.5_0012878g0010 Nicotiana tabacum HOM05D001742 ORTHO05D001689 1.2e-08 63.2 65 49.2
PGSC0003DMG400000930 Solanum tuberosum HOM05D001742 ORTHO05D001689 1.2e-08 63.2 50 52.0
TWI59G0089 Tripterygium wilfordii HOM05D001742 ORTHO05D001689 1.6e-08 62.8 50 60.0
Aa31LG2G14590 Aethionema arabicum HOM05D001742 ORTHO05D001689 2.1e-08 62.4 45 60.0
AL1G49750 Arabidopsis lyrata HOM05D001742 ORTHO05D001689 2.1e-08 62.4 45 60.0
AT1G31300 Arabidopsis thaliana HOM05D001742 ORTHO05D001689 2.1e-08 62.4 45 60.0
AT4G19645 Arabidopsis thaliana HOM05D001742 ORTHO05D001689 2.1e-08 62.4 47 59.6
Carub.0001s2973 Capsella rubella HOM05D001742 ORTHO05D001689 2.1e-08 62.4 45 60.0
CARHR030760 Cardamine hirsuta HOM05D001742 ORTHO05D001689 2.1e-08 62.4 45 60.0
Ca_13916_v3 Cicer arietinum L. HOM05D001742 ORTHO05D001689 2.1e-08 62.4 46 58.7
Thhalv10008439m.g Eutrema salsugineum HOM05D001742 ORTHO05D001689 2.1e-08 62.4 45 60.0
Sp1g27120 Schrenkiella parvula HOM05D001742 ORTHO05D001689 2.1e-08 62.4 45 60.0
Sp7g18200 Schrenkiella parvula HOM05D001742 ORTHO05D001689 2.1e-08 62.4 50 52.0
Atru.chr10.588 Acer truncatum HOM05D001742 ORTHO05D001689 2.8e-08 62.0 50 50.0
Thhalv10025981m.g Eutrema salsugineum HOM05D001742 ORTHO05D001689 2.8e-08 62.0 47 55.3
HanXRQChr02g0033041 Helianthus annuus HOM05D001742 ORTHO05D001689 2.8e-08 62.0 47 59.6
Lsat_1_v5_gn_3_102821 Lactuca sativa HOM05D001742 ORTHO05D001689 2.8e-08 62.0 47 61.7
SalBow8G4513 Salvia bowleyana HOM05D001742 ORTHO05D001689 3.6e-08 61.6 51 52.9
Solyc07g044990.3 Solanum lycopersicum HOM05D001742 ORTHO05D001689 3.6e-08 61.6 50 50.0
Sopen07g023520 Solanum pennellii HOM05D001742 ORTHO05D001689 3.6e-08 61.6 50 50.0
Cc09_g06740 Coffea canephora HOM05D001742 ORTHO05D001689 4.7e-08 61.2 50 54.0
Nitab4.5_0021934g0010 Nicotiana tabacum HOM05D001742 ORTHO05D001689 4.7e-08 61.2 65 44.6
QL08p045441 Quercus lobata HOM05D001742 ORTHO05D001689 4.7e-08 61.2 50 58.0
QL11p018418 Quercus lobata HOM05D001742 ORTHO05D001689 4.7e-08 61.2 50 58.0
THA.LOC104812714 Tarenaya hassleriana HOM05D001742 ORTHO05D001689 4.7e-08 61.2 45 60.0
TPR.G14739 Trifolium pratense HOM05D001742 ORTHO05D001689 4.7e-08 61.2 43 62.8
CANSAT35G1263 Cannabis sativa HOM05D001742 ORTHO05D001689 6.1e-08 60.8 53 52.8
Carub.0007s2152 Capsella rubella HOM05D001742 ORTHO05D001689 6.1e-08 60.8 47 57.4
BcaB07g32790 Brassica carinata HOM05D001742 ORTHO05D001689 8.0e-08 60.5 45 57.8
A09p34950 Brassica napus HOM05D001742 ORTHO05D001689 8.0e-08 60.5 45 57.8
BraA09t39026Z Brassica rapa HOM05D001742 ORTHO05D001689 8.0e-08 60.5 45 57.8
CAN.G1190.2 Capsicum annuum HOM05D001742 ORTHO05D001689 8.0e-08 60.5 50 52.0
CAN.G675.3 Capsicum annuum HOM05D001742 ORTHO05D001689 8.0e-08 60.5 46 60.9
Eucgr.E01925 Eucalyptus grandis HOM05D001742 ORTHO05D001689 8.0e-08 60.5 50 52.0
PSO675G9392 Papaver somniferum HOM05D001742 ORTHO05D001689 1.0e-07 60.1 47 55.3
A01p11530 Brassica napus HOM05D001742 ORTHO05D001689 1.4e-07 59.7 47 57.4
BraA01t01101Z Brassica rapa HOM05D001742 ORTHO05D001689 1.4e-07 59.7 47 57.4
Gohir.D04G034700 Gossypium hirsutum HOM05D001742 ORTHO05D001689 1.4e-07 59.7 50 60.0
PSO675G0082 Papaver somniferum HOM05D001742 ORTHO05D001689 1.4e-07 59.7 47 53.2
THA.LOC104811454 Tarenaya hassleriana HOM05D001742 ORTHO05D001689 1.4e-07 59.7 45 57.8
ATR0763G143 Amborella trichopoda HOM05D001742 ORTHO05D001689 1.8e-07 59.3 47 51.1
BcaB03g11637 Brassica carinata HOM05D001742 ORTHO05D001689 1.8e-07 59.3 47 55.3
BcaB03g13802 Brassica carinata HOM05D001742 ORTHO05D001689 1.8e-07 59.3 45 55.6
BcaC09g51395 Brassica carinata HOM05D001742 ORTHO05D001689 1.8e-07 59.3 47 57.4
BcaNung01765 Brassica carinata HOM05D001742 ORTHO05D001689 1.8e-07 59.3 47 55.3
A07p09460 Brassica napus HOM05D001742 ORTHO05D001689 1.8e-07 59.3 45 55.6
C01p13590 Brassica napus HOM05D001742 ORTHO05D001689 1.8e-07 59.3 47 57.4
C07p14560 Brassica napus HOM05D001742 ORTHO05D001689 1.8e-07 59.3 45 55.6
BolC7t41955H Brassica oleracea HOM05D001742 ORTHO05D001689 1.8e-07 59.3 45 55.6
BraA07t28742Z Brassica rapa HOM05D001742 ORTHO05D001689 1.8e-07 59.3 45 55.6
MSTRG.14897 Avicennia marina HOM05D001742 ORTHO05D001689 2.3e-07 58.9 49 61.2
BolC1t01333H Brassica oleracea HOM05D001742 ORTHO05D001689 2.3e-07 58.9 47 55.3
Psat5g188880 Pisum sativum HOM05D001742 ORTHO05D001689 2.3e-07 58.9 43 60.5
THA.LOC104798548 Tarenaya hassleriana HOM05D001742 ORTHO05D001689 3.0e-07 58.5 45 55.6
Migut.M00076 Erythranthe guttata HOM05D001742 ORTHO05D001689 4.0e-07 58.2 50 56.0
MSTRG.16328 Avicennia marina HOM05D001742 ORTHO05D001689 5.2e-07 57.8 47 51.1
CDE12G0682 Ceratophyllum demersum HOM05D001742 ORTHO05D001689 6.8e-07 57.4 55 47.3
HPP92_012288 Vanilla planifolia HOM05D001742 ORTHO05D001689 8.9e-07 57.0 45 55.6
Sed0022330 Sechium edule HOM05D001742 ORTHO05D001689 1.5e-06 56.2 50 58.0
CAN.G275.19 Capsicum annuum HOM05D001742 ORTHO05D001689 2.0e-06 55.8 50 46.0
Os01g0768200 Oryza sativa ssp. japonica HOM05D001742 ORTHO05D001689 2.0e-06 55.8 47 53.2
Zm00001eb370150 Zea mays HOM05D001742 ORTHO05D001689 2.0e-06 55.8 50 48.0
Cc05_g01080 Coffea canephora HOM05D001742 ORTHO05D001689 2.6e-06 55.5 50 56.0
Peaxi162Scf00359g00107 Petunia axillaris HOM05D001742 ORTHO05D001689 2.6e-06 55.5 61 44.3
Sed0000651 Sechium edule HOM05D001742 ORTHO05D001689 2.6e-06 55.5 50 56.0
Aa31LG9G15980 Aethionema arabicum HOM05D001742 ORTHO05D001689 3.4e-06 55.1 45 53.3
Lj1C587G6 Lonicera japonica HOM05D001742 ORTHO05D001689 4.4e-06 54.7 50 50.0
SGA_v2.0_scaffold181G39716 Striga asiatica HOM05D001527 ORTHO05D001492 4.4e-06 54.7 50 52.0
Glyma.18G113300 Glycine max HOM05D001742 ORTHO05D001689 5.7e-06 54.3 46 52.2
SGA_v2.0_scaffold39G15239 Striga asiatica HOM05D001742 ORTHO05D001689 5.7e-06 54.3 57 40.4


User provided reference genes

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