Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10033160m.g Citrus clementina HOM05D008287 ORTHO05D010110 2.7e-36 155.2 102 100.0
TAR629G1172 Trochodendron aralioides HOM05D008287 ORTHO05D010110 2.3e-16 89.0 99 51.5
Atru.chr12.751 Acer truncatum HOM05D008287 ORTHO05D010110 1.5e-15 86.3 102 51.0
Duzib114G0252 Durio zibethinus HOM05D008287 ORTHO05D010110 2.2e-14 82.4 98 50.0
Nn2g10792 Nelumbo nucifera HOM05D008287 ORTHO05D010110 2.2e-14 82.4 98 49.0
Hma1.2p1_0063F.1_g034480 Hydrangea macrophylla HOM05D008287 ORTHO05D010110 2.9e-14 82.0 86 47.7
Gohir.D13G023100 Gossypium hirsutum HOM05D008287 ORTHO05D010110 3.7e-14 81.6 99 49.5
Atru.chr12.776 Acer truncatum HOM05D008287 ORTHO05D010110 4.9e-14 81.3 96 51.0
Manes.10G045900 Manihot esculenta HOM05D008287 ORTHO05D010110 4.9e-14 81.3 98 50.0
Gohir.A13G024200 Gossypium hirsutum HOM05D008287 ORTHO05D010110 1.1e-13 80.1 100 49.0
Gorai.013G025800 Gossypium raimondii HOM05D008287 ORTHO05D010110 1.8e-13 79.3 100 48.0
Thecc.10G073600 Theobroma cacao HOM05D008287 ORTHO05D010110 1.8e-13 79.3 98 48.0
Actinidia38852 Actinidia chinensis HOM05D008287 ORTHO05D010110 5.4e-13 77.8 108 44.4
CiPaw.01G272900 Carya illinoinensis HOM05D008287 ORTHO05D010110 9.2e-13 77.0 101 47.5
Migut.F02005 Erythranthe guttata HOM05D008287 ORTHO05D010110 9.2e-13 77.0 86 47.7
Aqoxy1G01238 Aquilegia oxysepala HOM05D008287 ORTHO05D010110 1.6e-12 76.3 98 49.0
MSTRG.9186 Avicennia marina HOM05D008287 ORTHO05D010110 2.0e-12 75.9 86 45.3
Potri.008G039901 Populus trichocarpa HOM05D008287 ORTHO05D010110 4.6e-12 74.7 93 51.6
Sc09g0006380 Simmondsia chinensis HOM05D008287 ORTHO05D010110 4.6e-12 74.7 93 49.5
Potri.010G222400 Populus trichocarpa HOM05D008287 ORTHO05D010110 6.0e-12 74.3 98 56.1
Solyc04g049407.1 Solanum lycopersicum HOM05D008287 ORTHO05D010110 6.0e-12 74.3 92 47.8
PGSC0003DMG400012876 Solanum tuberosum HOM05D008287 ORTHO05D010110 1.0e-11 73.6 86 44.2
Sopen04g019400 Solanum pennellii HOM05D008287 ORTHO05D010110 1.7e-11 72.8 86 43.0
Cc06_g14360 Coffea canephora HOM05D008287 ORTHO05D010110 3.0e-11 72.0 89 64.0
Sabra10G0172000 Salix brachista HOM05D008287 ORTHO05D010110 3.9e-11 71.6 92 46.7
Prupe.2G213800 Prunus persica HOM05D008287 ORTHO05D010110 5.0e-11 71.2 94 42.6
ClCG05G021010 Citrullus lanatus HOM05D008287 ORTHO05D010110 1.1e-10 70.1 92 46.7
Rhsim09G0151900 Rhododendron simsii HOM05D008287 ORTHO05D010110 1.5e-10 69.7 96 44.8
Phvul.004G082500 Phaseolus vulgaris HOM05D008287 ORTHO05D010110 1.9e-10 69.3 99 43.4
PGR142G4013 Punica granatum HOM05D008287 ORTHO05D010110 1.9e-10 69.3 107 54.2
Cfa021511 Carpinus fangiana HOM05D008287 ORTHO05D010110 3.3e-10 68.6 92 47.8
MD01G1108600 Malus domestica HOM05D008287 ORTHO05D010110 7.3e-10 67.4 95 41.1
Glyma.02G073500 Glycine max HOM05D008287 ORTHO05D010110 1.2e-09 66.6 98 40.8
Nitab4.5_0000575g0160 Nicotiana tabacum HOM05D008287 ORTHO05D010110 1.6e-09 66.2 86 43.0
Lalb_Chr19g0129701 Lupinus albus HOM05D008287 ORTHO05D010110 3.6e-09 65.1 86 39.5
TPR.G822 Trifolium pratense HOM05D008287 ORTHO05D010110 3.6e-09 65.1 86 39.5
VMungo0464G1886 Vigna mungo HOM05D008287 ORTHO05D010110 3.6e-09 65.1 93 45.2
Nitab4.5_0010206g0030 Nicotiana tabacum HOM05D008287 ORTHO05D010110 4.7e-09 64.7 93 45.2
MBI10_g13401_MAGBIO Magnolia biondii HOM05D008287 ORTHO05D010110 6.2e-09 64.3 92 43.5
SGA_v2.0_scaffold62G21430 Striga asiatica HOM05D008287 ORTHO05D010110 6.2e-09 64.3 83 54.2
CsaV3_5G036300 Cucumis sativus L. HOM05D008287 ORTHO05D010110 8.0e-09 63.9 86 40.7
HanXRQChr01g0011461 Helianthus annuus HOM05D008287 ORTHO05D010110 1.1e-08 63.5 87 39.1
Glyma.16G154900 Glycine max HOM05D008287 ORTHO05D010110 2.3e-08 62.4 98 39.8
Sabra08G0027300 Salix brachista HOM05D008287 ORTHO05D010110 4.0e-08 61.6 32 84.4
Medtr6g033505 Medicago truncatula HOM05D008287 ORTHO05D010110 5.2e-08 61.2 98 55.1
arahy.Tifrunner.gnm1.ann1.LAB5TB Arachis hypogaea HOM05D008287 ORTHO05D010110 2.6e-07 58.9 86 53.5
CSS0035042 Camellia sinensis var. sinensis HOM05D008287 ORTHO05D010110 2.6e-07 58.9 32 81.2
ECA238G2524 Erigeron canadensis HOM05D008287 ORTHO05D010110 2.6e-07 58.9 86 36.0
arahy.Tifrunner.gnm1.ann1.7IIA7U Arachis hypogaea HOM05D008287 ORTHO05D010110 3.4e-07 58.5 86 53.5
FAN01G1692 Fragaria x ananassa HOM05D008287 ORTHO05D010110 3.4e-07 58.5 32 75.0
FAN10G2561 Fragaria x ananassa HOM05D008287 ORTHO05D010110 3.4e-07 58.5 32 75.0
RcHm_v2.0_Chr1g0363411 Rosa chinensis HOM05D008287 ORTHO05D010110 3.4e-07 58.5 32 75.0
FvH4_7g19600 Fragaria vesca HOM05D008287 ORTHO05D010110 5.8e-07 57.8 32 75.0
FAN06G2349 Fragaria x ananassa HOM05D000286 ORTHO05D009721 5.8e-07 57.8 32 75.0
unitig_899.g14438 Utricularia gibba HOM05D008287 ORTHO05D010110 7.5e-07 57.4 86 36.0
AT5G49015 Arabidopsis thaliana HOM05D013386 ORTHO05D010110 1.3e-06 56.6 98 38.8
AL8G22370 Arabidopsis lyrata HOM05D013386 ORTHO05D010110 6.4e-06 54.3 98 40.8
Lsat_1_v5_gn_2_114761 Lactuca sativa HOM05D008287 ORTHO05D010110 6.4e-06 54.3 86 57.0


User provided reference genes

Program Settings