Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10033128m.g Citrus clementina HOM05D006940 ORTHO05D008626 1.2e-58 229.6 112 100.0
Thecc.01G212400 Theobroma cacao HOM05D006940 ORTHO05D008626 6.5e-36 154.1 112 73.2
Duzib138G0498 Durio zibethinus HOM05D006940 ORTHO05D008626 1.6e-34 149.4 111 70.3
Dinv28817 Davidia involucrata HOM05D006940 ORTHO05D008626 2.7e-34 148.7 118 68.6
Duzib211G0506 Durio zibethinus HOM05D006940 ORTHO05D008626 7.9e-34 147.1 113 69.9
Duzib133G0939 Durio zibethinus HOM05D006940 ORTHO05D008626 1.8e-33 146.0 112 70.5
CiPaw.13G054100 Carya illinoinensis HOM05D006940 ORTHO05D008626 6.7e-33 144.1 115 66.1
QL09p045850 Quercus lobata HOM05D006940 ORTHO05D008626 1.5e-32 142.9 115 66.1
TWI36G1176 Tripterygium wilfordii HOM05D006940 ORTHO05D008626 1.5e-32 142.9 112 61.6
Gohir.D07G203400 Gossypium hirsutum HOM05D006940 ORTHO05D008626 4.4e-32 141.4 113 64.6
Gorai.001G228900 Gossypium raimondii HOM05D006940 ORTHO05D008626 4.4e-32 141.4 113 64.6
Atru.chr6.1604 Acer truncatum HOM05D006940 ORTHO05D008626 1.3e-31 139.8 116 66.4
Gohir.D07G166700 Gossypium hirsutum HOM05D006940 ORTHO05D008626 3.7e-31 138.3 112 66.1
Gorai.N003800 Gossypium raimondii HOM05D006940 ORTHO05D008626 4.8e-31 137.9 112 67.0
FAN24G1170 Fragaria x ananassa HOM05D006940 ORTHO05D008626 1.4e-30 136.3 104 66.3
Gohir.A07G197033 Gossypium hirsutum HOM05D006940 ORTHO05D008626 1.4e-30 136.3 113 62.8
FvH4_2g17950 Fragaria vesca HOM05D006940 ORTHO05D008626 1.8e-30 136.0 104 66.3
FAN15G1530 Fragaria x ananassa HOM05D006940 ORTHO05D008626 1.8e-30 136.0 104 66.3
Gohir.A07G159700 Gossypium hirsutum HOM05D006940 ORTHO05D008626 4.1e-30 134.8 112 66.1
CSS0001884 Camellia sinensis var. sinensis HOM05D006940 ORTHO05D008626 5.3e-30 134.4 115 65.2
RcHm_v2.0_Chr6g0283181 Rosa chinensis HOM05D006940 ORTHO05D008626 5.3e-30 134.4 114 63.2
Gorai.007G158800 Gossypium raimondii HOM05D006940 ORTHO05D008626 6.9e-30 134.0 114 66.7
Manes.12G052500 Manihot esculenta HOM05D006940 ORTHO05D008626 6.9e-30 134.0 114 66.7
CiPaw.14G043100 Carya illinoinensis HOM05D006940 ORTHO05D008626 9.1e-30 133.7 115 60.9
Gohir.A11G141800 Gossypium hirsutum HOM05D006940 ORTHO05D008626 9.1e-30 133.7 114 65.8
Gohir.D11G148100 Gossypium hirsutum HOM05D006940 ORTHO05D008626 1.2e-29 133.3 114 65.8
TAR365G0827 Trochodendron aralioides HOM05D006940 ORTHO05D008626 1.2e-29 133.3 106 63.2
Cpa.g.sc8.85 Carica papaya HOM05D006940 ORTHO05D008626 2.6e-29 132.1 110 60.9
Potri.002G249901 Populus trichocarpa HOM05D006940 ORTHO05D008626 4.5e-29 131.3 115 63.5
FAN27G2163 Fragaria x ananassa HOM05D006940 ORTHO05D008626 7.7e-29 130.6 104 64.4
COL.COLO4_06154 Corchorus olitorius HOM05D006940 ORTHO05D008626 1.3e-28 129.8 78 75.6
Prupe.8G192000 Prunus persica HOM05D006940 ORTHO05D008626 1.3e-28 129.8 106 65.1
PGR044G1150 Punica granatum HOM05D006940 ORTHO05D008626 5.0e-28 127.9 113 62.8
Rhsim13G0052100 Rhododendron simsii HOM05D006940 ORTHO05D008626 6.5e-28 127.5 104 63.5
Glyma.08G345100 Glycine max HOM05D006940 ORTHO05D008626 8.5e-28 127.1 112 61.6
MD05G1163400 Malus domestica HOM05D006940 ORTHO05D008626 8.5e-28 127.1 105 63.8
MD10G1153200 Malus domestica HOM05D006940 ORTHO05D008626 1.4e-27 126.3 104 66.3
Medtr7g052120 Medicago truncatula HOM05D006940 ORTHO05D008626 1.4e-27 126.3 102 64.7
Nitab4.5_0000038g0040 Nicotiana tabacum HOM05D006940 ORTHO05D008626 2.5e-27 125.6 112 59.8
Hma1.2p1_0781F.1_g216880 Hydrangea macrophylla HOM05D006940 ORTHO05D008626 4.2e-27 124.8 59 91.5
Glyma.18G152800 Glycine max HOM05D006940 ORTHO05D008626 5.5e-27 124.4 103 65.0
Lalb_Chr21g0315011 Lupinus albus HOM05D006940 ORTHO05D008626 7.2e-27 124.0 103 64.1
arahy.Tifrunner.gnm1.ann1.ZA5GY6 Arachis hypogaea HOM05D006940 ORTHO05D008626 9.4e-27 123.6 113 60.2
CSS0043498 Camellia sinensis var. sinensis HOM05D006940 ORTHO05D008626 9.4e-27 123.6 112 60.7
Phvul.008G137700 Phaseolus vulgaris HOM05D006940 ORTHO05D008626 9.4e-27 123.6 103 65.0
Psat0s1437g0080 Pisum sativum HOM05D006940 ORTHO05D008626 9.4e-27 123.6 102 63.7
PGSC0003DMG400007740 Solanum tuberosum HOM05D006940 ORTHO05D008626 9.4e-27 123.6 103 62.1
Lj1g0019270 Lotus japonicus HOM05D006940 ORTHO05D008626 1.6e-26 122.9 103 64.1
Sabra02G0190300 Salix brachista HOM05D006940 ORTHO05D008626 1.6e-26 122.9 104 59.6
TWI75G1309 Tripterygium wilfordii HOM05D006940 ORTHO05D008626 1.6e-26 122.9 113 56.6
Sed0013755 Sechium edule HOM05D006940 ORTHO05D008626 2.1e-26 122.5 78 74.4
Manes.13G053500 Manihot esculenta HOM05D006940 ORTHO05D008626 6.1e-26 120.9 87 69.0
Haze_03308 Corylus avellana HOM05D006940 ORTHO05D008626 8.0e-26 120.6 64 79.7
Sopen08g020450 Solanum pennellii HOM05D006940 ORTHO05D008626 8.0e-26 120.6 103 58.3
Sopen09g020450 Solanum pennellii HOM05D006940 ORTHO05D008626 8.0e-26 120.6 103 58.3
Eucgr.K02098 Eucalyptus grandis HOM05D006940 ORTHO05D008626 1.0e-25 120.2 117 56.4
Solyc08g066610.3 Solanum lycopersicum HOM05D006940 ORTHO05D008626 1.0e-25 120.2 103 58.3
Lalb_Chr03g0041181 Lupinus albus HOM05D006940 ORTHO05D008626 1.8e-25 119.4 103 61.2
Nitab4.5_0003186g0010 Nicotiana tabacum HOM05D006940 ORTHO05D008626 1.8e-25 119.4 112 59.8
vmacro02811 Vaccinium macrocarpon HOM05D006940 ORTHO05D008626 1.8e-25 119.4 53 94.3
SalBow7G1139 Salvia bowleyana HOM05D006940 ORTHO05D008626 3.0e-25 118.6 103 60.2
Oeu064661.1 Olea europaea HOM05D006940 ORTHO05D008626 3.9e-25 118.2 105 55.2
TPR.G26809 Trifolium pratense HOM05D006940 ORTHO05D008626 6.7e-25 117.5 103 61.2
Sed0027137 Sechium edule HOM05D006940 ORTHO05D008626 8.8e-25 117.1 51 98.0
Migut.D02467 Erythranthe guttata HOM05D006940 ORTHO05D008626 1.1e-24 116.7 116 54.3
MELO3C021111.2 Cucumis melo HOM05D006940 ORTHO05D008626 1.5e-24 116.3 108 59.3
Thhalv10026516m.g Eutrema salsugineum HOM05D006940 ORTHO05D008626 2.0e-24 115.9 61 82.0
CsaV3_7G026610 Cucumis sativus L. HOM05D006940 ORTHO05D008626 3.3e-24 115.2 89 64.0
Nn1g08072 Nelumbo nucifera HOM05D006940 ORTHO05D008626 3.3e-24 115.2 105 55.2
TPR.G2024 Trifolium pratense HOM05D006940 ORTHO05D008626 5.7e-24 114.4 51 92.2
Carub.0007s2980 Capsella rubella HOM05D006940 ORTHO05D008626 7.4e-24 114.0 114 59.6
PSO017G0530 Papaver somniferum HOM05D006940 ORTHO05D008626 7.4e-24 114.0 53 86.8
PSO675G0779 Papaver somniferum HOM05D006940 ORTHO05D008626 9.7e-24 113.6 101 56.4
Nn7g37664 Nelumbo nucifera HOM05D006940 ORTHO05D008626 1.3e-23 113.2 90 58.9
arahy.Tifrunner.gnm1.ann1.7YS827 Arachis hypogaea HOM05D006940 ORTHO05D008626 1.7e-23 112.8 108 59.3
BcaB04g17733 Brassica carinata HOM05D006940 ORTHO05D008626 1.7e-23 112.8 51 94.1
A08p07220 Brassica napus HOM05D006940 ORTHO05D008626 1.7e-23 112.8 51 94.1
C08p08940 Brassica napus HOM05D006940 ORTHO05D008626 1.7e-23 112.8 51 94.1
BolC8t47738H Brassica oleracea HOM05D006940 ORTHO05D008626 1.7e-23 112.8 51 94.1
BraA08t32735Z Brassica rapa HOM05D006940 ORTHO05D008626 1.7e-23 112.8 51 94.1
DCAR_012690 Daucus carota HOM05D000328 ORTHO05D008626 1.7e-23 112.8 66 75.8
Sp7g09835 Schrenkiella parvula HOM05D006940 ORTHO05D008626 1.7e-23 112.8 51 94.1
MSTRG.20995 Avicennia marina HOM05D006940 ORTHO05D008626 2.2e-23 112.5 100 55.0
AL9U11560 Arabidopsis lyrata HOM05D006940 ORTHO05D008626 2.8e-23 112.1 114 57.9
Psat0s4060g0200 Pisum sativum HOM05D006940 ORTHO05D008626 3.7e-23 111.7 113 55.8
TAR636G0441 Trochodendron aralioides HOM05D006940 ORTHO05D008626 3.7e-23 111.7 85 62.4
AT4G12970 Arabidopsis thaliana HOM05D006940 ORTHO05D008626 6.3e-23 110.9 112 58.9
CARHR218280 Cardamine hirsuta HOM05D006940 ORTHO05D008626 6.3e-23 110.9 112 54.5
VMungo0331G0069 Vigna mungo HOM05D006940 ORTHO05D008626 6.3e-23 110.9 53 88.7
Aa31sc38G90 Aethionema arabicum HOM05D006940 ORTHO05D008626 8.2e-23 110.5 50 92.0
CANSAT01G0416 Cannabis sativa HOM05D006940 ORTHO05D008626 1.4e-22 109.8 99 54.5
CANSAT01G0831 Cannabis sativa HOM05D006940 ORTHO05D008626 1.4e-22 109.8 99 54.5
CANSAT01G1056 Cannabis sativa HOM05D006940 ORTHO05D008626 1.4e-22 109.8 99 54.5
SalBow6G3514 Salvia bowleyana HOM05D006940 ORTHO05D008626 1.4e-22 109.8 104 56.7
Phvul.010G031000 Phaseolus vulgaris HOM05D006940 ORTHO05D008626 2.4e-22 109.0 53 86.8
MBI07_g41210_MAGBIO Magnolia biondii HOM05D006940 ORTHO05D008626 3.1e-22 108.6 115 53.0
EL10Ac5g11605 Beta vulgaris HOM05D006940 ORTHO05D008626 5.3e-22 107.8 103 49.5
HanXRQChr08g0231211 Helianthus annuus HOM05D006940 ORTHO05D008626 5.3e-22 107.8 85 57.6
Os01g0914400 Oryza sativa ssp. japonica HOM05D006940 ORTHO05D008626 5.3e-22 107.8 80 61.2
Sc01g0005680 Simmondsia chinensis HOM05D006940 ORTHO05D008626 5.3e-22 107.8 95 53.7
MSTRG.18810 Avicennia marina HOM05D006940 ORTHO05D008626 7.0e-22 107.5 112 53.6
GSVIVG01031691001 Vitis vinifera HOM05D006940 ORTHO05D008626 7.7e-21 104.0 47 87.2
Lsat_1_v5_gn_8_97920 Lactuca sativa HOM05D006940 ORTHO05D008626 1.0e-20 103.6 55 76.4
Lsat_1_v5_gn_9_16040 Lactuca sativa HOM05D006940 ORTHO05D008626 1.0e-20 103.6 100 56.0
THA.LOC104818992 Tarenaya hassleriana HOM05D006940 ORTHO05D008626 1.0e-20 103.6 111 47.7
MSTRG.12756 Avicennia marina HOM05D006940 ORTHO05D008626 1.3e-20 103.2 100 52.0
Zm00001eb364920 Zea mays HOM05D006940 ORTHO05D008626 1.7e-20 102.8 56 71.4
Zm00001eb143570 Zea mays HOM05D006940 ORTHO05D008626 3.8e-20 101.7 56 71.4
ATR0609G114 Amborella trichopoda HOM05D006940 ORTHO05D008626 3.2e-19 98.6 50 82.0
HanXRQChr16g0507861 Helianthus annuus HOM05D006940 ORTHO05D008626 5.5e-19 97.8 63 66.7
PGSC0003DMG400020111 Solanum tuberosum HOM05D006940 ORTHO05D008626 9.4e-19 97.1 55 80.0
AUR62042875 Chenopodium quinoa HOM05D006940 ORTHO05D008626 3.6e-18 95.1 52 71.2
SEGI_36325 Sequoiadendron giganteum HOM05D006940 ORTHO05D008626 1.4e-17 93.2 83 55.4
HPP92_011792 Vanilla planifolia HOM05D006940 ORTHO05D008626 8.8e-17 90.5 115 43.5
Zm00001eb174960 Zea mays HOM05D006940 ORTHO05D008626 2.2e-15 85.9 49 65.3
SMO351G0191 Selaginella moellendorffii HOM05D006940 ORTHO05D008626 2.4e-14 82.4 51 64.7


User provided reference genes

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