Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10033122m.g Citrus clementina HOM05D004600 ORTHO05D005471 3.8e-52 208.0 113 100.0
Ciclev10017245m.g Citrus clementina HOM05D004600 ORTHO05D005471 2.7e-50 201.8 113 96.5
Eucgr.E01748 Eucalyptus grandis HOM05D004600 ORTHO05D005471 3.5e-45 184.9 114 88.6
Gohir.D11G317800 Gossypium hirsutum HOM05D004600 ORTHO05D005471 3.5e-45 184.9 114 87.7
Gorai.007G347600 Gossypium raimondii HOM05D004600 ORTHO05D005471 3.5e-45 184.9 114 87.7
Thecc.05G234100 Theobroma cacao HOM05D004600 ORTHO05D005471 5.9e-45 184.1 114 86.8
Hund03244 Selenicereus undatus HOM05D004600 ORTHO05D005471 2.2e-44 182.2 113 84.1
COL.COLO4_08664 Corchorus olitorius HOM05D004910 ORTHO05D006864 3.8e-44 181.4 110 89.1
Duzib177G1065 Durio zibethinus HOM05D004600 ORTHO05D005471 3.8e-44 181.4 114 86.8
QL02p099100 Quercus lobata HOM05D004600 ORTHO05D005471 3.8e-44 181.4 113 85.8
ECA234G0066 Erigeron canadensis HOM05D004600 ORTHO05D005471 8.5e-44 180.3 114 84.2
Gohir.A11G302200 Gossypium hirsutum HOM05D004600 ORTHO05D005471 1.1e-43 179.9 114 86.0
GSVIVG01018312001 Vitis vinifera HOM05D004600 ORTHO05D005471 1.1e-43 179.9 114 84.2
EL10Ac2g03665 Beta vulgaris HOM05D004600 ORTHO05D005471 1.5e-43 179.5 114 86.0
THA.LOC104805733 Tarenaya hassleriana HOM05D004600 ORTHO05D005471 4.2e-43 177.9 114 84.2
Cfa003694 Carpinus fangiana HOM05D004600 ORTHO05D005471 5.5e-43 177.6 114 82.5
FvH4_7g07840 Fragaria vesca HOM05D004600 ORTHO05D005471 2.1e-42 175.6 115 82.6
FvH4_7g08250 Fragaria vesca HOM05D004600 ORTHO05D005471 2.1e-42 175.6 115 82.6
FAN01G2185 Fragaria x ananassa HOM05D004600 ORTHO05D005471 2.1e-42 175.6 115 82.6
FAN06G4779 Fragaria x ananassa HOM05D004600 ORTHO05D005471 2.1e-42 175.6 115 82.6
TAR374G1537 Trochodendron aralioides HOM05D004600 ORTHO05D005471 2.1e-42 175.6 113 81.4
AT2G30410 Arabidopsis thaliana HOM05D004600 ORTHO05D005471 2.7e-42 175.3 114 82.5
RcHm_v2.0_Chr1g0341631 Rosa chinensis HOM05D004600 ORTHO05D005471 2.7e-42 175.3 115 83.5
arahy.Tifrunner.gnm1.ann1.FL4BP3 Arachis hypogaea HOM05D004600 ORTHO05D005471 3.6e-42 174.9 114 83.3
CSS0000756 Camellia sinensis var. sinensis HOM05D004600 ORTHO05D005471 4.7e-42 174.5 114 82.5
Hma1.2p1_2581F.1_g324750 Hydrangea macrophylla HOM05D004600 ORTHO05D005471 6.1e-42 174.1 112 83.0
Actinidia30941 Actinidia chinensis HOM05D004600 ORTHO05D005471 8.0e-42 173.7 112 84.8
HanXRQChr06g0175191 Helianthus annuus HOM05D004600 ORTHO05D005471 8.0e-42 173.7 114 79.8
Solyc01g068400.3 Solanum lycopersicum HOM05D004600 ORTHO05D005471 8.0e-42 173.7 114 81.6
THA.LOC104821611 Tarenaya hassleriana HOM05D004600 ORTHO05D005471 8.0e-42 173.7 114 81.6
arahy.Tifrunner.gnm1.ann1.8V97K8 Arachis hypogaea HOM05D004600 ORTHO05D005471 1.0e-41 173.3 114 82.5
Thhalv10017954m.g Eutrema salsugineum HOM05D004600 ORTHO05D005471 1.0e-41 173.3 114 82.5
HanXRQChr17g0540501 Helianthus annuus HOM05D004600 ORTHO05D005471 1.0e-41 173.3 114 80.7
SalBow5G2739 Salvia bowleyana HOM05D004600 ORTHO05D005471 1.0e-41 173.3 114 80.7
SalBow5G4978 Salvia bowleyana HOM05D004600 ORTHO05D005471 1.0e-41 173.3 114 80.7
Carub.0004s1157 Capsella rubella HOM05D004600 ORTHO05D005471 1.4e-41 172.9 114 80.7
Lsat_1_v5_gn_3_31540 Lactuca sativa HOM05D004600 ORTHO05D005471 1.4e-41 172.9 114 80.7
Sopen01g030360 Solanum pennellii HOM05D004600 ORTHO05D005471 1.8e-41 172.6 114 80.7
Manes.09G132900 Manihot esculenta HOM05D004600 ORTHO05D005471 2.3e-41 172.2 112 81.2
MD07G1080900 Malus domestica HOM05D004600 ORTHO05D005471 3.0e-41 171.8 115 80.9
Oeu011239.1 Olea europaea HOM05D004600 ORTHO05D005471 4.0e-41 171.4 114 81.6
Prupe.2G105900 Prunus persica HOM05D004600 ORTHO05D005471 4.0e-41 171.4 115 80.0
TWI34G1465 Tripterygium wilfordii HOM05D004600 ORTHO05D005471 4.0e-41 171.4 112 82.1
CiPaw.11G057300 Carya illinoinensis HOM05D004600 ORTHO05D005471 5.2e-41 171.0 114 79.8
ClCG06G000640 Citrullus lanatus HOM05D004600 ORTHO05D005471 5.2e-41 171.0 112 79.5
Lalb_Chr10g0107261 Lupinus albus HOM05D004600 ORTHO05D005471 5.2e-41 171.0 114 79.8
MD02G1232800 Malus domestica HOM05D004600 ORTHO05D005471 5.2e-41 171.0 115 80.0
Manes.08G156800 Manihot esculenta HOM05D004600 ORTHO05D005471 5.2e-41 171.0 114 80.7
PGSC0003DMG400017954 Solanum tuberosum HOM05D004600 ORTHO05D005471 5.2e-41 171.0 114 79.8
Aqoxy3G02625 Aquilegia oxysepala HOM05D004600 ORTHO05D005471 8.8e-41 170.2 113 78.8
Aqoxy4G01604 Aquilegia oxysepala HOM05D004600 ORTHO05D005471 8.8e-41 170.2 113 78.8
PGR042G2124 Punica granatum HOM05D004600 ORTHO05D005471 8.8e-41 170.2 114 78.9
SpUn0968_0010 Schrenkiella parvula HOM05D004600 ORTHO05D005471 8.8e-41 170.2 115 79.1
CSS0047927 Camellia sinensis var. sinensis HOM05D004600 ORTHO05D005471 1.2e-40 169.9 114 79.8
TWI32G0106 Tripterygium wilfordii HOM05D004600 ORTHO05D005471 1.5e-40 169.5 112 80.4
Ca_06414_v3 Cicer arietinum L. HOM05D004600 ORTHO05D005471 2.0e-40 169.1 115 79.1
Nn6g33746 Nelumbo nucifera HOM05D004600 ORTHO05D005471 2.0e-40 169.1 113 79.6
Rhsim07G0038000 Rhododendron simsii HOM05D004600 ORTHO05D005471 2.0e-40 169.1 114 79.8
CANSAT56G0524 Cannabis sativa HOM05D004600 ORTHO05D005471 2.6e-40 168.7 111 83.8
MBI04_g38566_MAGBIO Magnolia biondii HOM05D004600 ORTHO05D005471 2.6e-40 168.7 113 77.0
TPR.G31719 Trifolium pratense HOM05D004600 ORTHO05D005471 2.6e-40 168.7 115 80.0
Migut.N01726 Erythranthe guttata HOM05D004600 ORTHO05D005471 3.4e-40 168.3 114 79.8
CARHR123850 Cardamine hirsuta HOM05D004600 ORTHO05D005471 4.4e-40 167.9 112 79.5
Nitab4.5_0006200g0020 Nicotiana tabacum HOM05D004600 ORTHO05D005471 4.4e-40 167.9 114 78.1
Cpa.g.sc73.56 Carica papaya HOM05D004600 ORTHO05D005471 5.7e-40 167.5 114 80.7
Glyma.12G219600 Glycine max HOM05D004600 ORTHO05D005471 5.7e-40 167.5 110 80.9
Sed0013640 Sechium edule HOM05D004600 ORTHO05D005471 5.7e-40 167.5 112 78.6
MSTRG.28140 Avicennia marina HOM05D004600 ORTHO05D005471 7.5e-40 167.2 114 78.9
AL136U10020 Arabidopsis lyrata HOM05D004600 ORTHO05D005471 1.3e-39 166.4 114 78.9
AL4G25280 Arabidopsis lyrata HOM05D004600 ORTHO05D005471 1.3e-39 166.4 114 78.9
CANSAT80G0198 Cannabis sativa HOM05D004600 ORTHO05D005471 1.3e-39 166.4 111 82.9
ATR0594G180 Amborella trichopoda HOM05D004600 ORTHO05D005471 2.2e-39 165.6 113 75.2
Carub.0004s0600 Capsella rubella HOM05D004600 ORTHO05D005471 2.2e-39 165.6 112 80.4
DCAR_002257 Daucus carota HOM05D004600 ORTHO05D005471 2.2e-39 165.6 112 77.7
Sed0004677 Sechium edule HOM05D004600 ORTHO05D005471 2.2e-39 165.6 112 77.7
AUR62010214 Chenopodium quinoa HOM05D004600 ORTHO05D005471 2.8e-39 165.2 114 78.9
AUR62023888 Chenopodium quinoa HOM05D004600 ORTHO05D005471 2.8e-39 165.2 114 78.9
Glyma.13G281700 Glycine max HOM05D004600 ORTHO05D005471 2.8e-39 165.2 112 78.6
A05p15020 Brassica napus HOM05D004600 ORTHO05D005471 3.7e-39 164.9 113 78.8
BolC4t23549H Brassica oleracea HOM05D004600 ORTHO05D005471 3.7e-39 164.9 113 78.8
BraA05t20428Z Brassica rapa HOM05D004600 ORTHO05D005471 3.7e-39 164.9 113 78.8
CAN.G179.37 Capsicum annuum HOM05D004600 ORTHO05D005471 3.7e-39 164.9 114 78.1
PSO782G3599 Papaver somniferum HOM05D004600 ORTHO05D005471 3.7e-39 164.9 114 77.2
Phvul.008G274500 Phaseolus vulgaris HOM05D004600 ORTHO05D005471 3.7e-39 164.9 114 76.3
PSO063G0817 Papaver somniferum HOM05D004600 ORTHO05D005471 4.8e-39 164.5 114 77.2
VMungo0647G0484 Vigna mungo HOM05D004600 ORTHO05D005471 4.8e-39 164.5 114 75.4
Potri.013G071100 Populus trichocarpa HOM05D004600 ORTHO05D005471 6.3e-39 164.1 113 77.9
C04p20100 Brassica napus HOM05D004600 ORTHO05D005471 8.3e-39 163.7 113 77.9
BcaC02g11135 Brassica carinata HOM05D004600 ORTHO05D005471 1.8e-38 162.5 113 77.9
Peaxi162Scf00309g00111 Petunia axillaris HOM05D004600 ORTHO05D005471 1.8e-38 162.5 114 77.2
SalBow2G1105 Salvia bowleyana HOM05D004600 ORTHO05D005471 1.8e-38 162.5 114 75.4
Actinidia05778 Actinidia chinensis HOM05D000441 ORTHO05D005471 3.1e-38 161.8 104 85.6
Sabra13G0062000 Salix brachista HOM05D004600 ORTHO05D005471 3.1e-38 161.8 113 77.9
BcaB02g10324 Brassica carinata HOM05D004600 ORTHO05D005471 4.1e-38 161.4 113 77.0
CDE02G3136 Ceratophyllum demersum HOM05D004600 ORTHO05D005471 4.1e-38 161.4 113 74.3
Medtr5g094290 Medicago truncatula HOM05D004600 ORTHO05D005471 7.0e-38 160.6 115 76.5
FAN10G3323 Fragaria x ananassa HOM05D004600 ORTHO05D005471 1.6e-37 159.5 146 65.1
BcaB01g04106 Brassica carinata HOM05D004600 ORTHO05D005471 5.9e-37 157.5 113 75.2
Cc10_g08750 Coffea canephora HOM05D004600 ORTHO05D005471 5.9e-37 157.5 108 76.9
Medtr5g094860 Medicago truncatula HOM05D004600 ORTHO05D005471 5.9e-37 157.5 115 75.7
CsaV3_6G006410 Cucumis sativus L. HOM05D004600 ORTHO05D005471 1.0e-36 156.8 112 76.8
MBI14_g39049_MAGBIO Magnolia biondii HOM05D004600 ORTHO05D005471 1.7e-36 156.0 113 71.7
MELO3C022478.2 Cucumis melo HOM05D004600 ORTHO05D005471 2.2e-36 155.6 112 74.1
DCAR_002240 Daucus carota HOM05D000064 ORTHO05D001307 2.2e-36 155.6 106 78.3
LjContig00272g0018481 Lotus japonicus HOM05D004600 ORTHO05D005471 2.2e-36 155.6 114 72.8
HPP92_003331 Vanilla planifolia HOM05D004600 ORTHO05D005471 3.8e-36 154.8 111 72.1
vmacro13519 Vaccinium macrocarpon HOM05D004600 ORTHO05D005471 5.0e-36 154.5 142 63.4
Aa31LG2G2070 Aethionema arabicum HOM05D004600 ORTHO05D005471 2.5e-35 152.1 113 72.6
Nitab4.5_0002801g0010 Nicotiana tabacum HOM05D004600 ORTHO05D005471 5.5e-35 151.0 145 61.4
Peaxi162Scf00519g00014 Petunia axillaris HOM05D004600 ORTHO05D005471 1.0e-33 146.7 104 76.0
Atru.chr2.1648 Acer truncatum HOM05D004600 ORTHO05D005471 1.2e-32 143.3 80 92.5
SEGI_02498 Sequoiadendron giganteum HOM05D004600 ORTHO05D005471 1.5e-32 142.9 113 63.7
Os02g0816500 Oryza sativa ssp. japonica HOM05D004600 ORTHO05D005471 4.4e-32 141.4 84 86.9
COL.COLO4_33093 Corchorus olitorius HOM05D004600 ORTHO05D005471 1.3e-31 139.8 91 83.5
SEGI_10368 Sequoiadendron giganteum HOM05D004600 ORTHO05D005471 2.2e-31 139.0 113 62.8
Haze_15791 Corylus avellana HOM05D004600 ORTHO05D005471 3.7e-31 138.3 80 87.5
Duzib106G0868 Durio zibethinus HOM05D004600 ORTHO05D005471 6.3e-31 137.5 77 92.2
Zm00001eb258870 Zea mays HOM05D004600 ORTHO05D005471 6.3e-31 137.5 79 88.6
Aa31LG5G6310 Aethionema arabicum HOM05D004600 ORTHO05D005471 1.1e-30 136.7 115 67.0
BcaNung06780 Brassica carinata HOM05D004600 ORTHO05D005471 1.4e-30 136.3 99 74.7
unitig_22.g5795 Utricularia gibba HOM05D004600 ORTHO05D005471 1.6e-29 132.9 107 67.3
Psat2g010800 Pisum sativum HOM05D004600 ORTHO05D005471 2.9e-28 128.6 83 80.7
Psat6g223560 Pisum sativum HOM05D004600 ORTHO05D005471 2.9e-28 128.6 83 80.7
arahy.Tifrunner.gnm1.ann1.AN2C62 Arachis hypogaea HOM05D004600 ORTHO05D005471 1.5e-27 126.3 104 70.2
COL.COLO4_34174 Corchorus olitorius HOM05D004600 ORTHO05D005471 3.6e-26 121.7 74 85.1
RcHm_v2.0_Chr1g0341741 Rosa chinensis HOM05D004600 ORTHO05D005471 1.4e-25 119.8 65 93.8
RhsimUnG0214300 Rhododendron simsii HOM05D004600 ORTHO05D005471 1.7e-23 112.8 111 54.1
SMO140G0024 Selaginella moellendorffii HOM05D004600 ORTHO05D005471 2.9e-23 112.1 77 74.0
arahy.Tifrunner.gnm1.ann1.TEM6YH Arachis hypogaea HOM05D004600 ORTHO05D005471 3.7e-23 111.7 77 79.2
Mapoly0038s0031 Marchantia polymorpha HOM05D004600 ORTHO05D005471 8.3e-23 110.5 105 53.3
CBR_g52286 Chara braunii HOM05D004600 ORTHO05D005471 7.8e-21 104.0 104 59.6
AagrBONN_evm.TU.Sc2ySwM_368.563 Anthoceros agrestis HOM05D001974 ORTHO05D001995 1.3e-20 103.2 102 54.9
BcaNung05668 Brassica carinata HOM05D004600 ORTHO05D005471 1.7e-20 102.8 76 72.4
BcaNung05666 Brassica carinata HOM05D004600 ORTHO05D005471 6.6e-20 100.9 76 72.4
PSO017G3083 Papaver somniferum HOM05D004600 ORTHO05D005471 6.6e-20 100.9 114 55.3
Pp3c8_15900 Physcomitrium patens HOM05D004600 ORTHO05D005471 2.5e-19 99.0 109 49.5
arahy.Tifrunner.gnm1.ann1.M3PSJH Arachis hypogaea HOM05D004254 ORTHO05D005184 8.0e-18 94.0 69 73.9
COL.COLO4_33692 Corchorus olitorius HOM05D004600 ORTHO05D005471 8.9e-17 90.5 100 58.0
Cre16.g670800 Chlamydomonas reinhardtii HOM05D004600 ORTHO05D005471 2.6e-16 89.0 105 47.6
AUR62013210 Chenopodium quinoa HOM05D004600 ORTHO05D005471 1.3e-15 86.7 63 74.6
Sc01g0008330 Simmondsia chinensis HOM05D004600 ORTHO05D005471 4.9e-15 84.7 62 74.2
Pp3c5_8620 Physcomitrium patens HOM05D004600 ORTHO05D005471 8.3e-15 84.0 76 55.3
RcHm_v2.0_Chr1g0341961 Rosa chinensis HOM05D004600 ORTHO05D005471 3.2e-14 82.0 51 84.3
Pp3c15_6440 Physcomitrium patens HOM05D004600 ORTHO05D005471 1.2e-13 80.1 104 45.2
MBI18_g40062_MAGBIO Magnolia biondii HOM05D004600 ORTHO05D005471 1.6e-13 79.7 45 86.7
RcHm_v2.0_Chr4g0446751 Rosa chinensis HOM05D004600 ORTHO05D005471 2.0e-13 79.3 50 82.0
MCO15G208 Micromonas commoda HOM05D004600 ORTHO05D005471 1.0e-12 77.0 101 45.5
RcHm_v2.0_Chr3g0457191 Rosa chinensis HOM05D004600 ORTHO05D005471 1.3e-12 76.6 51 80.4
SGA_v2.0_scaffold77G25264 Striga asiatica HOM05D000763 ORTHO05D000599 1.3e-12 76.6 95 50.5
FAN01G1805 Fragaria x ananassa HOM05D004600 ORTHO05D005471 1.7e-12 76.3 57 73.7
HanXRQChr10g0286821 Helianthus annuus HOM05D004600 ORTHO05D005471 3.9e-12 75.1 43 88.4
RcHm_v2.0_Chr1g0342531 Rosa chinensis HOM05D004600 ORTHO05D005471 2.5e-11 72.4 43 83.7
C03p20070 Brassica napus HOM05D004600 ORTHO05D005471 3.3e-11 72.0 98 49.0
HanXRQChr02g0044381 Helianthus annuus HOM05D004600 ORTHO05D005471 3.3e-11 72.0 43 83.7
Oeu019263.1 Olea europaea HOM05D004600 ORTHO05D005471 4.3e-11 71.6 54 70.4
COL.COLO4_33704 Corchorus olitorius HOM05D004600 ORTHO05D005471 9.5e-11 70.5 92 55.4
COL.COLO4_28352 Corchorus olitorius HOM05D004600 ORTHO05D005471 4.7e-10 68.2 62 56.5
BcaC01g05996 Brassica carinata HOM05D004600 ORTHO05D005471 1.4e-09 66.6 96 46.9
A03p17010 Brassica napus HOM05D004600 ORTHO05D005471 2.3e-09 65.9 59 61.0
PRCOL_00002235 Prasinoderma coloniale HOM05D004600 ORTHO05D005471 2.3e-09 65.9 95 42.1
Pp3c12_22810 Physcomitrium patens HOM05D004600 ORTHO05D005471 5.8e-08 61.2 59 49.2
arahy.Tifrunner.gnm1.ann1.3LH6CZ Arachis hypogaea HOM05D004600 ORTHO05D021519 9.9e-08 60.5 92 45.7


User provided reference genes

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