Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10033110m.g Citrus clementina HOM05D004722 ORTHO05D005453 7.1e-54 213.8 115 100.0
Atru.chr11.2706 Acer truncatum HOM05D004722 ORTHO05D005453 5.3e-17 91.3 85 65.9
Manes.10G152300 Manihot esculenta HOM05D004722 ORTHO05D005453 5.9e-16 87.8 85 64.7
Phvul.005G042200 Phaseolus vulgaris HOM05D004722 ORTHO05D005453 3.8e-15 85.1 70 71.4
FAN01G1424 Fragaria x ananassa HOM05D000082 ORTHO05D005453 6.5e-15 84.3 73 68.5
TWI60G0560 Tripterygium wilfordii HOM05D004722 ORTHO05D005453 6.5e-15 84.3 95 55.8
COL.COLO4_35454 Corchorus olitorius HOM05D004722 ORTHO05D005453 1.1e-14 83.6 77 62.3
CAN.G129.50 Capsicum annuum HOM05D004722 ORTHO05D005453 1.4e-14 83.2 80 60.0
Medtr2g061780 Medicago truncatula HOM05D004722 ORTHO05D005453 1.4e-14 83.2 77 67.5
Glyma.15G268200 Glycine max HOM05D004722 ORTHO05D005453 1.9e-14 82.8 70 68.6
PGR102G1407 Punica granatum HOM05D004722 ORTHO05D005453 1.9e-14 82.8 70 65.7
Haze_03270 Corylus avellana HOM05D004722 ORTHO05D005453 3.2e-14 82.0 90 60.0
Ca_03203_v3 Cicer arietinum L. HOM05D004722 ORTHO05D005453 4.2e-14 81.6 77 66.2
RcHm_v2.0_Chr1g0313231 Rosa chinensis HOM05D004722 ORTHO05D005453 4.2e-14 81.6 73 67.1
Hma1.2p1_0541F.1_g174840 Hydrangea macrophylla HOM05D004722 ORTHO05D005453 7.2e-14 80.9 81 60.5
Rhsim07G0049700 Rhododendron simsii HOM05D004722 ORTHO05D005453 7.2e-14 80.9 80 66.2
Thecc.09G215900 Theobroma cacao HOM05D004722 ORTHO05D005453 7.2e-14 80.9 86 61.6
TPR.G16145 Trifolium pratense HOM05D004722 ORTHO05D005453 7.2e-14 80.9 77 66.2
Aa31LG1G19080 Aethionema arabicum HOM05D004722 ORTHO05D005453 1.2e-13 80.1 68 67.6
CSS0019299 Camellia sinensis var. sinensis HOM05D004722 ORTHO05D005453 1.2e-13 80.1 87 60.9
CiPaw.13G035000 Carya illinoinensis HOM05D004722 ORTHO05D005453 1.2e-13 80.1 78 65.4
AT1G05575 Arabidopsis thaliana HOM05D004722 ORTHO05D005453 1.6e-13 79.7 67 68.7
arahy.Tifrunner.gnm1.ann1.3B9L35 Arachis hypogaea HOM05D004722 ORTHO05D005453 1.6e-13 79.7 77 66.2
Potri.009G024300 Populus trichocarpa HOM05D004722 ORTHO05D005453 1.6e-13 79.7 94 62.8
Glyma.08G158100 Glycine max HOM05D004722 ORTHO05D005453 2.1e-13 79.3 70 65.7
Lsat_1_v5_gn_1_68380 Lactuca sativa HOM05D004722 ORTHO05D005453 2.7e-13 79.0 77 63.6
Sabra09G0015700 Salix brachista HOM05D004722 ORTHO05D005453 2.7e-13 79.0 79 65.8
BcaC02g11308 Brassica carinata HOM05D004722 ORTHO05D005453 3.6e-13 78.6 98 53.1
C04p17690 Brassica napus HOM05D004722 ORTHO05D005453 3.6e-13 78.6 98 53.1
BolC4t23317H Brassica oleracea HOM05D004722 ORTHO05D005453 3.6e-13 78.6 98 53.1
CSS0018564 Camellia sinensis var. sinensis HOM05D004722 ORTHO05D005453 3.6e-13 78.6 83 63.9
Thhalv10017532m.g Eutrema salsugineum HOM05D004722 ORTHO05D005453 3.6e-13 78.6 99 51.5
Actinidia05843 Actinidia chinensis HOM05D004722 ORTHO05D005453 4.6e-13 78.2 73 65.8
Duzib114G0602 Durio zibethinus HOM05D004722 ORTHO05D005453 4.6e-13 78.2 70 67.1
AL1G15450 Arabidopsis lyrata HOM05D004722 ORTHO05D005453 6.1e-13 77.8 83 59.0
CSS0017159 Camellia sinensis var. sinensis HOM05D004722 ORTHO05D005453 6.1e-13 77.8 87 60.9
MD00G1055400 Malus domestica HOM05D004722 ORTHO05D005453 6.1e-13 77.8 68 69.1
MD02G1319500 Malus domestica HOM05D004722 ORTHO05D005453 6.1e-13 77.8 77 63.6
Psat1g129080 Pisum sativum HOM05D004722 ORTHO05D005453 6.1e-13 77.8 68 69.1
BcaB02g06840 Brassica carinata HOM05D004722 ORTHO05D005453 7.9e-13 77.4 78 61.5
Sed0000285 Sechium edule HOM05D004722 ORTHO05D005453 7.9e-13 77.4 68 64.7
vmacro13608 Vaccinium macrocarpon HOM05D004722 ORTHO05D005453 7.9e-13 77.4 76 64.5
A05p13590 Brassica napus HOM05D004722 ORTHO05D005453 1.0e-12 77.0 99 53.5
BraA05t20296Z Brassica rapa HOM05D004722 ORTHO05D005453 1.0e-12 77.0 99 53.5
ClCG10G012700 Citrullus lanatus HOM05D004722 ORTHO05D005453 1.0e-12 77.0 93 53.8
COL.COLO4_10444 Corchorus olitorius HOM05D004722 ORTHO05D005453 1.0e-12 77.0 77 62.3
Lalb_Chr25g0283671 Lupinus albus HOM05D004722 ORTHO05D005453 1.0e-12 77.0 70 67.1
Nitab4.5_0000468g0090 Nicotiana tabacum HOM05D004722 ORTHO05D005453 1.0e-12 77.0 78 56.4
Potri.001G230900 Populus trichocarpa HOM05D004722 ORTHO05D005453 1.0e-12 77.0 87 60.9
RhsimUnG0154700 Rhododendron simsii HOM05D004722 ORTHO05D005453 1.0e-12 77.0 67 67.2
THA.LOC104800946 Tarenaya hassleriana HOM05D004722 ORTHO05D005453 1.0e-12 77.0 76 63.2
TAR633G0462 Trochodendron aralioides HOM05D004722 ORTHO05D005453 1.0e-12 77.0 100 53.0
Cfa010708 Carpinus fangiana HOM05D004722 ORTHO05D005453 1.4e-12 76.6 80 60.0
Rhsim13G0228000 Rhododendron simsii HOM05D004722 ORTHO05D005453 1.4e-12 76.6 67 67.2
Sp4g14310 Schrenkiella parvula HOM05D004722 ORTHO05D005453 1.4e-12 76.6 67 68.7
Lj3g0007026 Lotus japonicus HOM05D004722 ORTHO05D005453 1.8e-12 76.3 78 64.1
DCAR_029591 Daucus carota HOM05D004722 ORTHO05D005453 2.3e-12 75.9 84 57.1
Peaxi162Scf00245g00096 Petunia axillaris HOM05D004722 ORTHO05D005453 2.3e-12 75.9 95 51.6
BraA10t42701Z Brassica rapa HOM05D000875 ORTHO05D000684 3.0e-12 75.5 67 68.7
CARHR005060 Cardamine hirsuta HOM05D004722 ORTHO05D005453 3.0e-12 75.5 82 57.3
Eucgr.B03635 Eucalyptus grandis HOM05D004722 ORTHO05D005453 3.0e-12 75.5 70 64.3
Migut.N01655 Erythranthe guttata HOM05D004722 ORTHO05D005453 3.9e-12 75.1 83 55.4
Hma1.2p1_1373F.1_g278710 Hydrangea macrophylla HOM05D004722 ORTHO05D005453 3.9e-12 75.1 72 63.9
Hma1.2p1_2663F.1_g326415 Hydrangea macrophylla HOM05D004722 ORTHO05D005453 3.9e-12 75.1 72 63.9
Carub.0004s1325 Capsella rubella HOM05D004722 ORTHO05D005453 5.1e-12 74.7 67 67.2
Prupe.2G002500 Prunus persica HOM05D004722 ORTHO05D005453 5.1e-12 74.7 88 58.0
PGSC0003DMG400028988 Solanum tuberosum HOM05D004722 ORTHO05D005453 5.1e-12 74.7 79 59.5
Aqoxy2G00098 Aquilegia oxysepala HOM05D004722 ORTHO05D005453 8.8e-12 73.9 94 52.1
Aqoxy3G01856 Aquilegia oxysepala HOM05D004722 ORTHO05D005453 8.8e-12 73.9 94 52.1
A10p04290 Brassica napus HOM05D004722 ORTHO05D005453 8.8e-12 73.9 78 59.0
BraA10t42697Z Brassica rapa HOM05D004722 ORTHO05D005453 8.8e-12 73.9 78 59.0
Peaxi162Scf00402g00810 Petunia axillaris HOM05D004722 ORTHO05D005453 8.8e-12 73.9 75 60.0
Ciclev10017204m.g Citrus clementina HOM05D004722 ORTHO05D005453 1.1e-11 73.6 66 66.7
Sed0020970 Sechium edule HOM05D004722 ORTHO05D005453 1.1e-11 73.6 80 58.8
Cc02_g26920 Coffea canephora HOM05D004722 ORTHO05D005453 1.5e-11 73.2 71 59.2
Eucgr.B02611 Eucalyptus grandis HOM05D004722 ORTHO05D005453 1.5e-11 73.2 80 61.2
HanXRQChr15g0480671 Helianthus annuus HOM05D004722 ORTHO05D005453 1.5e-11 73.2 82 52.4
BolC5t29171H Brassica oleracea HOM05D004722 ORTHO05D005453 2.0e-11 72.8 78 56.4
ECA236G3701 Erigeron canadensis HOM05D004722 ORTHO05D005453 2.0e-11 72.8 79 55.7
PGR119G0776 Punica granatum HOM05D004722 ORTHO05D005453 2.0e-11 72.8 88 56.8
Sabra16G0138300 Salix brachista HOM05D004722 ORTHO05D005453 2.0e-11 72.8 83 59.0
CANSAT11G0834 Cannabis sativa HOM05D004722 ORTHO05D005453 2.5e-11 72.4 68 61.8
Cpa.g.sc189.2 Carica papaya HOM05D004722 ORTHO05D005453 2.5e-11 72.4 76 57.9
Cc02_g26900 Coffea canephora HOM05D004722 ORTHO05D005453 2.5e-11 72.4 68 61.8
HanXRQChr11g0344951 Helianthus annuus HOM05D004722 ORTHO05D005453 2.5e-11 72.4 68 63.2
MELO3C023928.2 Cucumis melo HOM05D004722 ORTHO05D005453 3.3e-11 72.0 68 61.8
Thecc.10G172000 Theobroma cacao HOM05D004722 ORTHO05D005453 3.3e-11 72.0 81 56.8
BcaC05g24363 Brassica carinata HOM05D004722 ORTHO05D005453 4.3e-11 71.6 82 57.3
Solyc01g073720.2 Solanum lycopersicum HOM05D004722 ORTHO05D005453 5.7e-11 71.2 77 59.7
Sopen01g033290 Solanum pennellii HOM05D004722 ORTHO05D005453 5.7e-11 71.2 83 59.0
PGSC0003DMG400028984 Solanum tuberosum HOM05D004722 ORTHO05D005453 5.7e-11 71.2 77 59.7
GSVIVG01025254001 Vitis vinifera HOM05D004722 ORTHO05D005453 5.7e-11 71.2 66 62.1
Gohir.A05G401550 Gossypium hirsutum HOM05D004722 ORTHO05D005453 7.4e-11 70.9 84 52.4
Gohir.D04G014200 Gossypium hirsutum HOM05D004722 ORTHO05D005453 7.4e-11 70.9 84 52.4
Gorai.012G016800 Gossypium raimondii HOM05D004722 ORTHO05D005453 9.7e-11 70.5 84 52.4
AL4G27260 Arabidopsis lyrata HOM05D004722 ORTHO05D005453 1.3e-10 70.1 67 62.7
AL80U10030 Arabidopsis lyrata HOM05D004722 ORTHO05D005453 1.3e-10 70.1 67 62.7
CSS0019909 Camellia sinensis var. sinensis HOM05D004722 ORTHO05D005453 1.3e-10 70.1 86 58.1
AT2G31945 Arabidopsis thaliana HOM05D004722 ORTHO05D005453 1.7e-10 69.7 67 61.2
PSO339G1234 Papaver somniferum HOM05D004722 ORTHO05D005453 1.7e-10 69.7 77 54.5
Carub.0001s0489 Capsella rubella HOM05D004722 ORTHO05D005453 2.2e-10 69.3 81 56.8
Nn2g15722 Nelumbo nucifera HOM05D004722 ORTHO05D005453 2.2e-10 69.3 68 66.2
Sopen01g033320 Solanum pennellii HOM05D004722 ORTHO05D005453 2.8e-10 68.9 79 54.4
TAR636G1609 Trochodendron aralioides HOM05D004722 ORTHO05D005453 4.8e-10 68.2 68 63.2
Sc06g0004360 Simmondsia chinensis HOM05D004722 ORTHO05D005453 6.3e-10 67.8 73 56.2
Potri.003G215300 Populus trichocarpa HOM05D004722 ORTHO05D005453 1.1e-09 67.0 77 55.8
RcHm_v2.0_Chr5g0081201 Rosa chinensis HOM05D004722 ORTHO05D005453 1.1e-09 67.0 71 57.7
HanXRQChr01g0021201 Helianthus annuus HOM05D004722 ORTHO05D005453 1.4e-09 66.6 62 64.5
TAR636G0988 Trochodendron aralioides HOM05D004722 ORTHO05D005453 1.4e-09 66.6 68 61.8
Lalb_Chr01g0014951 Lupinus albus HOM05D004722 ORTHO05D005453 1.8e-09 66.2 73 56.2
Os09g0446700 Oryza sativa ssp. japonica HOM05D004722 ORTHO05D005453 2.4e-09 65.9 70 54.3
DCAR_027044 Daucus carota HOM05D004722 ORTHO05D005453 3.1e-09 65.5 65 61.5
Prupe.6G012500 Prunus persica HOM05D004722 ORTHO05D005453 4.1e-09 65.1 90 51.1
DCAR_027045 Daucus carota HOM05D004722 ORTHO05D005453 5.3e-09 64.7 66 59.1
MD11G1015000 Malus domestica HOM05D004722 ORTHO05D005453 5.3e-09 64.7 75 56.0
Nn7g35982 Nelumbo nucifera HOM05D004722 ORTHO05D005453 5.3e-09 64.7 78 57.7
MD03G1011900 Malus domestica HOM05D004722 ORTHO05D005453 6.9e-09 64.3 62 61.3
Os06g0207200 Oryza sativa ssp. japonica HOM05D004722 ORTHO05D005453 6.9e-09 64.3 80 51.2
Gorai.013G005600 Gossypium raimondii HOM05D004722 ORTHO05D005453 9.1e-09 63.9 78 56.4
Potri.001G010600 Populus trichocarpa HOM05D004722 ORTHO05D005453 9.1e-09 63.9 68 60.3
CSS0030536 Camellia sinensis var. sinensis HOM05D004722 ORTHO05D005453 1.2e-08 63.5 68 61.8
Gohir.D13G005100 Gossypium hirsutum HOM05D004722 ORTHO05D005453 1.2e-08 63.5 66 59.1
Gohir.A13G005400 Gossypium hirsutum HOM05D004722 ORTHO05D005453 1.5e-08 63.2 78 57.7
Os02g0774200 Oryza sativa ssp. japonica HOM05D004722 ORTHO05D005453 1.5e-08 63.2 82 54.9
Nitab4.5_0009236g0010 Nicotiana tabacum HOM05D004722 ORTHO05D005453 2.6e-08 62.4 76 52.6
Zm00001eb373570 Zea mays HOM05D004722 ORTHO05D005453 2.6e-08 62.4 87 49.4
FvH4_3g44500 Fragaria vesca HOM05D004722 ORTHO05D005453 3.4e-08 62.0 71 54.9
FAN11G3093 Fragaria x ananassa HOM05D004722 ORTHO05D005453 3.4e-08 62.0 71 54.9
Zm00001eb100700 Zea mays HOM05D004722 ORTHO05D005453 3.4e-08 62.0 66 57.6
Atru.chr3.2176 Acer truncatum HOM05D004722 ORTHO05D005453 4.5e-08 61.6 53 69.8
Oeu034890.1 Olea europaea HOM05D004722 ORTHO05D005453 5.9e-08 61.2 74 51.4
Zm00001eb100710 Zea mays HOM05D004722 ORTHO05D005453 5.9e-08 61.2 66 57.6
Gohir.A10G182200 Gossypium hirsutum HOM05D004722 ORTHO05D005453 7.7e-08 60.8 81 53.1
SalBow4G0008 Salvia bowleyana HOM05D004722 ORTHO05D005453 7.7e-08 60.8 73 54.8
SalBow4G0755 Salvia bowleyana HOM05D004722 ORTHO05D005453 7.7e-08 60.8 73 54.8
ClCG09G003700 Citrullus lanatus HOM05D004722 ORTHO05D005453 1.3e-07 60.1 70 54.3
DCAR_023306 Daucus carota HOM05D004722 ORTHO05D005453 1.7e-07 59.7 76 50.0
Atru.chr3.2177 Acer truncatum HOM05D004722 ORTHO05D005453 2.2e-07 59.3 73 53.4
Ah.06g190970 Amaranthus hybridus HOM05D004722 ORTHO05D005453 2.2e-07 59.3 65 53.8
EL10Ac4g09615 Beta vulgaris HOM05D004722 ORTHO05D005453 2.9e-07 58.9 65 55.4
EL10Ac4g09614 Beta vulgaris HOM05D004722 ORTHO05D005453 3.8e-07 58.5 80 50.0
Cpa.g.sc119.96 Carica papaya HOM05D004722 ORTHO05D005453 5.0e-07 58.2 64 62.5
Oeu032785.1 Olea europaea HOM05D004722 ORTHO05D005453 8.5e-07 57.4 68 57.4
Zm00001eb193270 Zea mays HOM05D004722 ORTHO05D005453 1.1e-06 57.0 72 52.8
HPP92_023476 Vanilla planifolia HOM05D004722 ORTHO05D005453 3.2e-06 55.5 68 50.0
EL10Ac4g09616 Beta vulgaris HOM05D004722 ORTHO05D005453 7.2e-06 54.3 91 42.9
HPP92_023456 Vanilla planifolia HOM05D004722 ORTHO05D005453 7.2e-06 54.3 68 50.0
QL04p001566 Quercus lobata HOM05D004722 ORTHO05D005453 9.4e-06 53.9 62 54.8


User provided reference genes

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