Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10033086m.g Citrus clementina HOM05D005269 ORTHO05D006429 2.1e-64 248.8 123 100.0
CAN.G500.91 Capsicum annuum HOM05D005269 ORTHO05D006429 3.3e-41 171.8 119 72.3
Atru.chr12.1824 Acer truncatum HOM05D005269 ORTHO05D006429 4.3e-41 171.4 123 73.2
Cc11_g00500 Coffea canephora HOM05D005269 ORTHO05D006429 5.6e-41 171.0 125 69.6
Solyc09g091450.3 Solanum lycopersicum HOM05D005269 ORTHO05D006429 1.3e-40 169.9 120 67.5
THA.LOC104820303 Tarenaya hassleriana HOM05D005269 ORTHO05D006429 1.3e-40 169.9 126 69.8
PGSC0003DMG400029616 Solanum tuberosum HOM05D005269 ORTHO05D006429 2.8e-40 168.7 120 67.5
Sopen09g034380 Solanum pennellii HOM05D005269 ORTHO05D006429 3.7e-40 168.3 120 66.7
Potri.019G042900 Populus trichocarpa HOM05D005269 ORTHO05D006429 1.1e-39 166.8 120 71.7
Haze_00354 Corylus avellana HOM05D005269 ORTHO05D006429 2.4e-39 165.6 134 66.4
Actinidia33802 Actinidia chinensis HOM05D005269 ORTHO05D006429 3.1e-39 165.2 122 63.9
Thhalv10009118m.g Eutrema salsugineum HOM05D005269 ORTHO05D006429 3.1e-39 165.2 127 68.5
Sabra19G0053500 Salix brachista HOM05D005269 ORTHO05D006429 3.1e-39 165.2 122 70.5
Dinv17239 Davidia involucrata HOM05D005269 ORTHO05D006429 4.0e-39 164.9 130 61.5
Sp1g08440 Schrenkiella parvula HOM05D005269 ORTHO05D006429 4.0e-39 164.9 127 67.7
Aa31LG1G5120 Aethionema arabicum HOM05D005269 ORTHO05D006429 5.3e-39 164.5 127 66.1
A06p06530 Brassica napus HOM05D005269 ORTHO05D006429 5.3e-39 164.5 127 66.9
Peaxi162Scf00047g01229 Petunia axillaris HOM05D005269 ORTHO05D006429 9.0e-39 163.7 119 69.7
BraA06t23864Z Brassica rapa HOM05D005269 ORTHO05D006429 1.2e-38 163.3 127 66.1
PGR004G2648 Punica granatum HOM05D005269 ORTHO05D006429 1.2e-38 163.3 124 70.2
Cpa.g.sc43.150 Carica papaya HOM05D005269 ORTHO05D006429 1.5e-38 162.9 130 63.8
Eucgr.I00374 Eucalyptus grandis HOM05D005269 ORTHO05D006429 1.5e-38 162.9 124 65.3
BcaC05g24843 Brassica carinata HOM05D005269 ORTHO05D006429 2.6e-38 162.2 127 66.1
BolC5t29544H Brassica oleracea HOM05D005269 ORTHO05D006429 2.6e-38 162.2 127 66.1
Carub.0001s0919 Capsella rubella HOM05D005269 ORTHO05D006429 3.4e-38 161.8 127 66.9
CiPaw.05G211300 Carya illinoinensis HOM05D005269 ORTHO05D006429 3.4e-38 161.8 120 68.3
AL1G20410 Arabidopsis lyrata HOM05D005269 ORTHO05D006429 9.9e-38 160.2 119 68.9
AT1G09815 Arabidopsis thaliana HOM05D005269 ORTHO05D006429 9.9e-38 160.2 127 66.1
MD07G1311000 Malus domestica HOM05D005269 ORTHO05D006429 9.9e-38 160.2 131 64.9
CARHR009820 Cardamine hirsuta HOM05D005269 ORTHO05D006429 1.3e-37 159.8 128 65.6
COL.COLO4_12968 Corchorus olitorius HOM05D005269 ORTHO05D006429 1.7e-37 159.5 127 67.7
Potri.013G076400 Populus trichocarpa HOM05D005269 ORTHO05D006429 2.2e-37 159.1 125 68.8
Cfa016104 Carpinus fangiana HOM05D005269 ORTHO05D006429 2.9e-37 158.7 142 62.0
RcHm_v2.0_Chr2g0117101 Rosa chinensis HOM05D005269 ORTHO05D006429 4.9e-37 157.9 121 61.2
Prupe.2G330200 Prunus persica HOM05D005269 ORTHO05D006429 6.4e-37 157.5 129 65.1
MSTRG.4345 Avicennia marina HOM05D005269 ORTHO05D006429 8.4e-37 157.1 118 65.3
DCAR_009029 Daucus carota HOM05D005269 ORTHO05D006429 1.1e-36 156.8 126 64.3
Duzib128G1401 Durio zibethinus HOM05D005269 ORTHO05D006429 1.1e-36 156.8 130 68.5
Sabra13G0065600 Salix brachista HOM05D005269 ORTHO05D006429 1.4e-36 156.4 124 66.1
Thecc.05G226600 Theobroma cacao HOM05D005269 ORTHO05D006429 4.2e-36 154.8 130 67.7
Gohir.D11G234500 Gossypium hirsutum HOM05D005269 ORTHO05D006429 1.2e-35 153.3 125 65.6
Rhsim09G0214100 Rhododendron simsii HOM05D005269 ORTHO05D006429 1.6e-35 152.9 139 56.8
Gorai.007G246800 Gossypium raimondii HOM05D005269 ORTHO05D006429 2.7e-35 152.1 125 65.6
Manes.09G130300 Manihot esculenta HOM05D005269 ORTHO05D006429 2.7e-35 152.1 130 63.1
Eucgr.L00611 Eucalyptus grandis HOM05D005269 ORTHO05D006429 3.5e-35 151.8 124 61.3
Hma1.2p1_0419F.1_g149570 Hydrangea macrophylla HOM05D005269 ORTHO05D006429 3.5e-35 151.8 133 60.9
Lj7A504G56 Lonicera japonica HOM05D005269 ORTHO05D006429 4.6e-35 151.4 124 61.3
Gohir.A11G225900 Gossypium hirsutum HOM05D005269 ORTHO05D006429 7.9e-35 150.6 125 64.8
Gohir.A13G001000 Gossypium hirsutum HOM05D005269 ORTHO05D006429 1.3e-34 149.8 125 64.0
TAR374G1160 Trochodendron aralioides HOM05D005269 ORTHO05D006429 1.8e-34 149.4 124 61.3
Oeu034712.1 Olea europaea HOM05D005269 ORTHO05D006429 3.0e-34 148.7 122 60.7
MELO3C005384.2 Cucumis melo HOM05D005269 ORTHO05D006429 8.7e-34 147.1 125 58.4
unitig_52.g17685 Utricularia gibba HOM05D005269 ORTHO05D006429 8.7e-34 147.1 115 63.5
EL10Ac4g10063 Beta vulgaris HOM05D005269 ORTHO05D006429 1.1e-33 146.7 121 63.6
Thecc.05G226200 Theobroma cacao HOM05D005269 ORTHO05D006429 1.1e-33 146.7 130 65.4
Ah.04g159550 Amaranthus hybridus HOM05D005269 ORTHO05D006429 1.5e-33 146.4 123 61.8
ClCG01G005450 Citrullus lanatus HOM05D005269 ORTHO05D006429 1.9e-33 146.0 126 57.9
PGSC0003DMG400019109 Solanum tuberosum HOM05D005269 ORTHO05D006429 2.5e-33 145.6 133 55.6
CsaV3_5G005690 Cucumis sativus L. HOM05D005269 ORTHO05D006429 5.6e-33 144.4 125 58.4
Sed0009591 Sechium edule HOM05D005269 ORTHO05D006429 1.3e-32 143.3 127 59.8
FvH4_1g22780 Fragaria vesca HOM05D005269 ORTHO05D006429 1.6e-32 142.9 119 62.2
FAN26G3478 Fragaria x ananassa HOM05D005269 ORTHO05D006429 1.6e-32 142.9 119 60.5
Thecc.05G226400 Theobroma cacao HOM05D005269 ORTHO05D006429 2.1e-32 142.5 129 63.6
Aqoxy6G02173 Aquilegia oxysepala HOM05D005269 ORTHO05D006429 6.2e-32 141.0 90 74.4
Peaxi162Scf00536g00089 Petunia axillaris HOM05D005269 ORTHO05D006429 6.2e-32 141.0 116 62.1
SGA_v2.0_scaffold18G08210 Striga asiatica HOM05D005269 ORTHO05D006429 6.2e-32 141.0 118 61.0
Sc16g0010860 Simmondsia chinensis HOM05D005269 ORTHO05D006429 8.2e-32 140.6 116 59.5
Sopen05g032040 Solanum pennellii HOM05D005269 ORTHO05D006429 8.2e-32 140.6 131 55.7
FAN28G1075 Fragaria x ananassa HOM05D005269 ORTHO05D006429 1.1e-31 140.2 119 58.0
GSVIVG01024265001 Vitis vinifera HOM05D005269 ORTHO05D006429 1.4e-31 139.8 120 62.5
Psat7g094200 Pisum sativum HOM05D005269 ORTHO05D006429 1.8e-31 139.4 121 59.5
FAN23G2200 Fragaria x ananassa HOM05D005269 ORTHO05D006429 2.4e-31 139.0 114 62.3
FAN19G2412 Fragaria x ananassa HOM05D005269 ORTHO05D006429 3.1e-31 138.7 119 60.5
Nn1g09278 Nelumbo nucifera HOM05D005269 ORTHO05D006429 4.0e-31 138.3 119 57.1
Nitab4.5_0001066g0040 Nicotiana tabacum HOM05D005269 ORTHO05D006429 5.3e-31 137.9 130 56.2
Nitab4.5_0001769g0050 Nicotiana tabacum HOM05D005269 ORTHO05D006429 6.9e-31 137.5 128 56.2
PSO063G4725 Papaver somniferum HOM05D005269 ORTHO05D006429 6.9e-31 137.5 125 60.0
Solyc05g053520.3 Solanum lycopersicum HOM05D005269 ORTHO05D006429 6.9e-31 137.5 131 54.2
PSO782G4777 Papaver somniferum HOM05D005269 ORTHO05D006429 7.6e-30 134.0 126 57.9
vmacro22190 Vaccinium macrocarpon HOM05D005269 ORTHO05D006429 7.6e-30 134.0 122 53.3
Phvul.002G201200 Phaseolus vulgaris HOM05D005269 ORTHO05D006429 1.7e-29 132.9 120 57.5
ATR0568G075 Amborella trichopoda HOM05D005269 ORTHO05D006429 2.9e-29 132.1 115 55.7
arahy.Tifrunner.gnm1.ann1.UWAC6K Arachis hypogaea HOM05D005269 ORTHO05D006429 2.9e-29 132.1 120 60.0
MBI04_g30790_MAGBIO Magnolia biondii HOM05D005269 ORTHO05D006429 2.9e-29 132.1 119 55.5
TAR629G0465 Trochodendron aralioides HOM05D005269 ORTHO05D006429 3.8e-29 131.7 125 57.6
CSS0034044 Camellia sinensis var. sinensis HOM05D005269 ORTHO05D006429 4.9e-29 131.3 123 52.8
AUR62006583 Chenopodium quinoa HOM05D005269 ORTHO05D006429 6.5e-29 131.0 125 58.4
AUR62000236 Chenopodium quinoa HOM05D005269 ORTHO05D006429 1.1e-28 130.2 125 58.4
HanXRQChr17g0540921 Helianthus annuus HOM05D005269 ORTHO05D006429 1.1e-28 130.2 123 55.3
Psat7g094160 Pisum sativum HOM05D005269 ORTHO05D006429 1.1e-28 130.2 119 58.0
ECA232G2798 Erigeron canadensis HOM05D005251 ORTHO05D006680 3.2e-28 128.6 120 56.7
Phvul.002G201100 Phaseolus vulgaris HOM05D005269 ORTHO05D006429 4.2e-28 128.3 124 61.3
Hund07408 Selenicereus undatus HOM05D005269 ORTHO05D006429 5.5e-28 127.9 122 54.1
Ah.06g194960 Amaranthus hybridus HOM05D005269 ORTHO05D006429 7.1e-28 127.5 115 56.5
Glyma.05G124300 Glycine max HOM05D005269 ORTHO05D006429 9.3e-28 127.1 120 60.0
Migut.H00004 Erythranthe guttata HOM05D005269 ORTHO05D006429 1.2e-27 126.7 123 55.3
Lsat_1_v5_gn_9_46181 Lactuca sativa HOM05D005269 ORTHO05D006429 1.6e-27 126.3 125 52.8
arahy.Tifrunner.gnm1.ann1.FKKB7G Arachis hypogaea HOM05D005269 ORTHO05D006429 2.7e-27 125.6 121 57.9
CANSAT78G2182 Cannabis sativa HOM05D005269 ORTHO05D006429 6.0e-27 124.4 118 57.6
Ca_18303_v3 Cicer arietinum L. HOM05D005269 ORTHO05D006429 1.0e-26 123.6 117 53.8
CAN.G17.24 Capsicum annuum HOM05D005269 ORTHO05D006429 2.5e-25 119.0 126 49.2
CDE11G1263 Ceratophyllum demersum HOM05D005269 ORTHO05D006429 2.5e-25 119.0 118 50.0
Gorai.013G185000 Gossypium raimondii HOM05D005269 ORTHO05D006429 4.3e-25 118.2 127 57.5
VMungo0251G2623 Vigna mungo HOM05D005269 ORTHO05D006429 5.7e-25 117.9 119 56.3
Sed0022400 Sechium edule HOM05D005269 ORTHO05D006429 2.8e-24 115.5 119 52.1
CDE02G3654 Ceratophyllum demersum HOM05D005269 ORTHO05D006429 6.3e-24 114.4 118 49.2
Lj4g0020860 Lotus japonicus HOM05D005269 ORTHO05D006429 1.8e-23 112.8 110 59.1
Medtr4g094465 Medicago truncatula HOM05D005269 ORTHO05D006429 6.9e-23 110.9 123 52.0
Zm00001eb318480 Zea mays HOM05D005269 ORTHO05D006429 9.0e-23 110.5 132 49.2
Mapoly0002s0066 Marchantia polymorpha HOM05D005269 ORTHO05D006429 1.2e-22 110.2 133 45.1
C05p07920 Brassica napus HOM05D005269 ORTHO05D006429 2.6e-22 109.0 63 74.6
Lalb_Chr07g0189121 Lupinus albus HOM05D005269 ORTHO05D006429 5.9e-22 107.8 120 51.7
TWI32G0228 Tripterygium wilfordii HOM05D005269 ORTHO05D006429 7.6e-22 107.5 64 70.3
Gohir.D13G162800 Gossypium hirsutum HOM05D005269 ORTHO05D006429 1.3e-21 106.7 126 52.4
SEGI_20967 Sequoiadendron giganteum HOM05D005269 ORTHO05D006429 1.9e-20 102.8 139 41.0
Gohir.A13G157700 Gossypium hirsutum HOM05D005269 ORTHO05D006429 2.5e-20 102.4 119 51.3
Glyma.08G079500 Glycine max HOM05D005269 ORTHO05D006429 3.2e-20 102.1 104 52.9
TPR.G23807 Trifolium pratense HOM05D005269 ORTHO05D006429 4.2e-20 101.7 120 46.7
Pp3c4_21450 Physcomitrium patens HOM05D005269 ORTHO05D006429 4.6e-19 98.2 88 54.5
HPP92_001933 Vanilla planifolia HOM05D005269 ORTHO05D006429 6.1e-19 97.8 128 46.1
Actinidia04559 Actinidia chinensis HOM05D005269 ORTHO05D006429 8.8e-18 94.0 90 52.2
Os09g0520100 Oryza sativa ssp. japonica HOM05D005269 ORTHO05D006429 2.5e-17 92.4 131 41.2
Glyma.15G135000 Glycine max HOM05D005269 ORTHO05D006429 5.7e-17 91.3 109 45.9
Phvul.006G123900 Phaseolus vulgaris HOM05D005269 ORTHO05D006429 3.7e-16 88.6 63 54.0
TPR.G31897 Trifolium pratense HOM05D005269 ORTHO05D006429 2.6e-14 82.4 114 40.4
AUR62032913 Chenopodium quinoa HOM05D005269 ORTHO05D006429 4.5e-14 81.6 64 60.9
Medtr1g105865 Medicago truncatula HOM05D005269 ORTHO05D006429 7.7e-14 80.9 113 43.4
SMO134G0019 Selaginella moellendorffii HOM05D001491 ORTHO05D001443 1.3e-13 80.1 121 40.5
Medtr4g094458 Medicago truncatula HOM05D005269 ORTHO05D006429 1.9e-12 76.3 65 55.4
CDE02G2358 Ceratophyllum demersum HOM05D005269 ORTHO05D006429 9.4e-12 73.9 46 67.4
AagrBONN_evm.TU.Sc2ySwM_344.2125 Anthoceros agrestis HOM05D005269 ORTHO05D006429 2.7e-11 72.4 61 50.8
SEGI_01057 Sequoiadendron giganteum HOM05D005269 ORTHO05D006429 2.3e-10 69.3 79 35.4
Nitab4.5_0011997g0010 Nicotiana tabacum HOM05D005269 ORTHO05D006429 3.9e-10 68.6 72 56.9
Mapoly0080s0095 Marchantia polymorpha HOM05D005269 ORTHO05D006429 1.5e-09 66.6 59 45.8
Nitab4.5_0002284g0060 Nicotiana tabacum HOM05D005269 ORTHO05D006429 1.5e-09 66.6 72 55.6
SEGI_08095 Sequoiadendron giganteum HOM05D005269 ORTHO05D006429 2.6e-09 65.9 127 29.9
PRCOL_00003345 Prasinoderma coloniale HOM05D005269 ORTHO05D006429 3.3e-09 65.5 123 35.8
Medtr5g006580 Medicago truncatula HOM05D004187 ORTHO05D004890 7.4e-09 64.3 49 57.1
Os08g0163300 Oryza sativa ssp. japonica HOM05D005269 ORTHO05D006429 2.2e-08 62.8 62 45.2
Phvul.006G123800 Phaseolus vulgaris HOM05D005269 ORTHO05D006429 4.8e-08 61.6 84 45.2
Zm00001eb415390 Zea mays HOM05D005269 ORTHO05D006429 1.1e-07 60.5 66 43.9
MCO11G533 Micromonas commoda HOM05D005269 ORTHO05D006429 1.8e-07 59.7 73 39.7
Cre06.g292950 Chlamydomonas reinhardtii HOM05D005269 ORTHO05D006429 3.1e-07 58.9 130 29.2


User provided reference genes

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