Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10033085m.g Citrus clementina HOM05D007963 ORTHO05D009967 5.2e-63 244.2 123 100.0
Duzib133G0999 Durio zibethinus HOM05D007963 ORTHO05D009967 6.0e-35 151.0 125 62.4
Atru.chr11.2601 Acer truncatum HOM05D007963 ORTHO05D009967 1.8e-34 149.4 128 62.5
Thecc.01G408600 Theobroma cacao HOM05D007963 ORTHO05D009967 1.4e-31 139.8 126 56.3
QL04p008099 Quercus lobata HOM05D007963 ORTHO05D009967 6.5e-29 131.0 122 59.0
QL04p008549 Quercus lobata HOM05D007963 ORTHO05D009967 6.5e-29 131.0 122 59.0
Haze_03176 Corylus avellana HOM05D007963 ORTHO05D009967 8.4e-29 130.6 123 57.7
TAR369G0233 Trochodendron aralioides HOM05D007963 ORTHO05D009967 1.9e-28 129.4 123 57.7
Potri.009G059100 Populus trichocarpa HOM05D007963 ORTHO05D009967 4.2e-28 128.3 120 57.5
Cfa010795 Carpinus fangiana HOM05D007963 ORTHO05D009967 5.5e-28 127.9 125 57.6
Manes.07G007300 Manihot esculenta HOM05D007963 ORTHO05D009967 5.5e-28 127.9 123 54.5
vmacro13678 Vaccinium macrocarpon HOM05D007963 ORTHO05D009967 2.1e-27 125.9 123 52.8
CiPaw.13G006800 Carya illinoinensis HOM05D007963 ORTHO05D009967 3.5e-27 125.2 123 56.1
CiPaw.14G001400 Carya illinoinensis HOM05D007963 ORTHO05D009967 8.7e-26 120.6 122 54.9
RcHm_v2.0_Chr7g0228141 Rosa chinensis HOM05D007963 ORTHO05D009967 1.5e-25 119.8 124 50.8
CSS0005909 Camellia sinensis var. sinensis HOM05D007963 ORTHO05D009967 2.5e-25 119.0 121 56.2
FvH4_5g32100 Fragaria vesca HOM05D007963 ORTHO05D009967 1.6e-24 116.3 124 50.0
VMungo1127G0040 Vigna mungo HOM05D007963 ORTHO05D009967 2.2e-24 115.9 124 53.2
Nn2g15279 Nelumbo nucifera HOM05D007963 ORTHO05D009967 2.4e-23 112.5 124 52.4
DCAR_003219 Daucus carota HOM05D007963 ORTHO05D009967 9.0e-23 110.5 121 53.7
PGSC0003DMG400023738 Solanum tuberosum HOM05D007963 ORTHO05D009967 1.2e-22 110.2 126 51.6
Lalb_Chr20g0107921 Lupinus albus HOM05D007963 ORTHO05D009967 1.5e-22 109.8 123 52.0
Prupe.2G017200 Prunus persica HOM05D007963 ORTHO05D009967 1.5e-22 109.8 105 60.0
Sabra09G0043500 Salix brachista HOM05D007963 ORTHO05D009967 1.5e-22 109.8 105 56.2
Lj3g0025556 Lotus japonicus HOM05D007963 ORTHO05D009967 2.0e-22 109.4 125 47.2
ClCG10G012280 Citrullus lanatus HOM05D007963 ORTHO05D009967 3.4e-22 108.6 127 51.2
Eucgr.J01210 Eucalyptus grandis HOM05D007963 ORTHO05D009967 5.9e-22 107.8 124 48.4
Sed0005364 Sechium edule HOM05D007963 ORTHO05D009967 3.8e-21 105.1 124 50.0
Rhsim07G0056600 Rhododendron simsii HOM05D007963 ORTHO05D009967 5.0e-21 104.8 126 50.0
SalBow5G1437 Salvia bowleyana HOM05D007963 ORTHO05D009967 5.0e-21 104.8 123 47.2
SalBow5G4167 Salvia bowleyana HOM05D007963 ORTHO05D009967 5.0e-21 104.8 123 47.2
MELO3C023985.2 Cucumis melo HOM05D007963 ORTHO05D009967 8.5e-21 104.0 130 47.7
Glyma.12G008400 Glycine max HOM05D007963 ORTHO05D009967 1.4e-20 103.2 128 46.1
CsaV3_3G032070 Cucumis sativus L. HOM05D007963 ORTHO05D009967 2.5e-20 102.4 130 48.5
COL.COLO4_04871 Corchorus olitorius HOM05D007963 ORTHO05D009967 5.5e-20 101.3 126 50.0
Sopen10g031160 Solanum pennellii HOM05D007963 ORTHO05D009967 9.3e-20 100.5 93 55.9
MSTRG.20574 Avicennia marina HOM05D007963 ORTHO05D009967 6.1e-19 97.8 124 47.6
EL10Ac2g04344 Beta vulgaris HOM05D002263 ORTHO05D003537 6.1e-19 97.8 124 43.5
TWI09G0461 Tripterygium wilfordii HOM05D007963 ORTHO05D009967 1.8e-18 96.3 132 51.5
Hma1.2p1_2160F.1_g315600 Hydrangea macrophylla HOM05D007963 ORTHO05D009967 2.3e-18 95.9 75 60.0
Sed0018324 Sechium edule HOM05D007963 ORTHO05D009967 2.3e-18 95.9 124 49.2
Phvul.011G012801 Phaseolus vulgaris HOM05D007963 ORTHO05D009967 5.1e-18 94.7 60 73.3
MBI04_g34432_MAGBIO Magnolia biondii HOM05D007963 ORTHO05D009967 8.8e-18 94.0 121 49.6
HanXRQChr01g0016481 Helianthus annuus HOM05D007963 ORTHO05D009967 2.5e-17 92.4 126 45.2
Gorai.004G171400 Gossypium raimondii HOM05D007963 ORTHO05D009967 3.3e-17 92.0 129 43.4
MD02G1308200 Malus domestica HOM05D007963 ORTHO05D009967 4.3e-17 91.7 116 49.1
Sc23g0005920 Simmondsia chinensis HOM05D007963 ORTHO05D009967 9.7e-17 90.5 98 49.0
Gohir.D08G164400 Gossypium hirsutum HOM05D007963 ORTHO05D009967 1.7e-16 89.7 64 65.6
Gohir.A08G143400 Gossypium hirsutum HOM05D007963 ORTHO05D009967 2.2e-16 89.4 129 42.6
Lsat_1_v5_gn_1_105740 Lactuca sativa HOM05D007963 ORTHO05D009967 8.2e-16 87.4 124 46.0
CARHR161770 Cardamine hirsuta HOM05D007963 ORTHO05D009967 2.4e-15 85.9 125 44.0
Cpa.g.sc125.16 Carica papaya HOM05D007963 ORTHO05D009967 6.9e-15 84.3 126 45.2
Thhalv10010836m.g Eutrema salsugineum HOM05D007963 ORTHO05D009967 9.1e-15 84.0 127 44.9
Migut.B01286 Erythranthe guttata HOM05D007963 ORTHO05D009967 1.2e-14 83.6 76 53.9
AUR62009397 Chenopodium quinoa HOM05D007963 ORTHO05D009967 1.5e-14 83.2 92 50.0
SGA_v2.0_scaffold4G02518 Striga asiatica HOM05D007963 ORTHO05D009967 3.4e-14 82.0 94 43.6
A09p45130 Brassica napus HOM05D007963 ORTHO05D009967 7.7e-14 80.9 85 55.3
BraA09t39974Z Brassica rapa HOM05D007963 ORTHO05D009967 7.7e-14 80.9 85 55.3
BcaB01g00449 Brassica carinata HOM05D007963 ORTHO05D009967 1.3e-13 80.1 85 54.1
C08p27320 Brassica napus HOM05D007963 ORTHO05D009967 1.3e-13 80.1 85 54.1
BcaNung06964 Brassica carinata HOM05D007963 ORTHO05D009967 2.2e-13 79.3 84 52.4
unitig_61.g26362 Utricularia gibba HOM05D007963 ORTHO05D009967 2.2e-13 79.3 56 69.6
BcaNung06087 Brassica carinata HOM05D007963 ORTHO05D009967 6.5e-13 77.8 89 51.7
BolC8t50349H Brassica oleracea HOM05D007963 ORTHO05D009967 6.5e-13 77.8 85 52.9
BcaC02g09285 Brassica carinata HOM05D007963 ORTHO05D009967 3.2e-12 75.5 126 42.1
A04p07310 Brassica napus HOM05D007963 ORTHO05D009967 4.2e-12 75.1 127 42.5
BraA04t16426Z Brassica rapa HOM05D007963 ORTHO05D009967 4.2e-12 75.1 127 42.5
Medtr4g039540 Medicago truncatula HOM05D007963 ORTHO05D009967 7.2e-12 74.3 98 46.9
Os03g0217000 Oryza sativa ssp. japonica HOM05D007963 ORTHO05D009967 7.2e-12 74.3 55 61.8
Carub.0005s1839 Capsella rubella HOM05D007963 ORTHO05D009967 9.4e-12 73.9 131 39.7
AL5G32620 Arabidopsis lyrata HOM05D007963 ORTHO05D009967 1.0e-10 70.5 85 51.8
Zm00001eb400040 Zea mays HOM05D007963 ORTHO05D009967 3.0e-10 68.9 48 66.7
AT3G52070 Arabidopsis thaliana HOM05D007963 ORTHO05D009967 8.8e-10 67.4 83 50.6
Aa31LG10G7140 Aethionema arabicum HOM05D007963 ORTHO05D009967 1.5e-09 66.6 132 38.6
BcaB02g08592 Brassica carinata HOM05D007963 ORTHO05D009967 1.5e-09 66.6 121 40.5
C04p40920 Brassica napus HOM05D007963 ORTHO05D009967 4.1e-07 58.5 110 39.1
SEGI_13442 Sequoiadendron giganteum HOM05D007963 ORTHO05D009967 2.6e-06 55.8 46 56.5
SEGI_37070 Sequoiadendron giganteum HOM05D007963 ORTHO05D009967 2.6e-06 55.8 46 56.5


User provided reference genes

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