Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10033079m.g Citrus clementina HOM05D006772 ORTHO05D008367 3.4e-65 251.5 126 100.0
Atru.chr6.1734 Acer truncatum HOM05D006772 ORTHO05D008367 1.2e-38 163.3 124 71.0
COL.COLO4_17058 Corchorus olitorius HOM05D006772 ORTHO05D008367 8.6e-37 157.1 130 66.9
QL12p005804 Quercus lobata HOM05D006772 ORTHO05D008367 8.6e-37 157.1 131 65.6
QL12p005837 Quercus lobata HOM05D006772 ORTHO05D008367 8.6e-37 157.1 131 65.6
Manes.17G012000 Manihot esculenta HOM05D006772 ORTHO05D008367 1.5e-36 156.4 138 65.9
HanXRQChr03g0084031 Helianthus annuus HOM05D006772 ORTHO05D008367 2.8e-35 152.1 136 63.2
Potri.003G091400 Populus trichocarpa HOM05D006772 ORTHO05D008367 2.8e-35 152.1 126 63.5
Nitab4.5_0000804g0080 Nicotiana tabacum HOM05D006772 ORTHO05D008367 8.1e-35 150.6 128 60.9
Sabra03G0061100 Salix brachista HOM05D006772 ORTHO05D008367 8.1e-35 150.6 132 63.6
Potri.001G142700 Populus trichocarpa HOM05D006772 ORTHO05D008367 1.1e-34 150.2 127 62.2
Eucgr.D02187 Eucalyptus grandis HOM05D006772 ORTHO05D008367 2.3e-34 149.1 126 63.5
Sabra01G0111500 Salix brachista HOM05D006772 ORTHO05D008367 3.1e-34 148.7 127 61.4
arahy.Tifrunner.gnm1.ann1.6N9PAN Arachis hypogaea HOM05D006772 ORTHO05D008367 5.2e-34 147.9 130 60.0
arahy.Tifrunner.gnm1.ann1.WNGN5W Arachis hypogaea HOM05D006772 ORTHO05D008367 5.2e-34 147.9 130 60.0
Cfa012424 Carpinus fangiana HOM05D006772 ORTHO05D008367 5.2e-34 147.9 133 60.9
Thecc.03G229400 Theobroma cacao HOM05D006772 ORTHO05D008367 6.8e-34 147.5 125 66.4
Peaxi162Scf00460g00052 Petunia axillaris HOM05D006772 ORTHO05D008367 8.9e-34 147.1 124 62.1
Cc08_g02570 Coffea canephora HOM05D006772 ORTHO05D008367 1.2e-33 146.7 128 64.1
Duzib205G2036 Durio zibethinus HOM05D006772 ORTHO05D008367 2.0e-33 146.0 130 62.3
Haze_08246 Corylus avellana HOM05D006772 ORTHO05D008367 2.6e-33 145.6 130 60.8
FAN08G3182 Fragaria x ananassa HOM05D006772 ORTHO05D008367 2.6e-33 145.6 132 59.1
Rhsim07G0126400 Rhododendron simsii HOM05D006772 ORTHO05D008367 3.4e-33 145.2 124 62.9
VMungo1215G2403 Vigna mungo HOM05D006772 ORTHO05D008367 3.4e-33 145.2 130 60.8
Aqoxy3G02398 Aquilegia oxysepala HOM05D006772 ORTHO05D008367 4.4e-33 144.8 127 61.4
FvH4_5g21990 Fragaria vesca HOM05D006772 ORTHO05D008367 4.4e-33 144.8 135 60.0
FAN18G1611 Fragaria x ananassa HOM05D006772 ORTHO05D008367 4.4e-33 144.8 135 60.0
MD06G1033600 Malus domestica HOM05D006772 ORTHO05D008367 4.4e-33 144.8 129 58.9
Hma1.2p1_0991F.1_g245070 Hydrangea macrophylla HOM05D006772 ORTHO05D008367 5.8e-33 144.4 124 62.1
Glyma.11G043000 Glycine max HOM05D006772 ORTHO05D008367 7.6e-33 144.1 130 60.0
Gohir.A03G001600 Gossypium hirsutum HOM05D006772 ORTHO05D008367 9.9e-33 143.7 124 62.1
CSS0016213 Camellia sinensis var. sinensis HOM05D006772 ORTHO05D008367 1.3e-32 143.3 126 61.9
CSS0038918 Camellia sinensis var. sinensis HOM05D006772 ORTHO05D008367 1.3e-32 143.3 124 62.1
MD16G1275100 Malus domestica HOM05D006772 ORTHO05D008367 1.3e-32 143.3 130 59.2
RcHm_v2.0_Chr7g0209491 Rosa chinensis HOM05D006772 ORTHO05D008367 1.3e-32 143.3 132 58.3
FAN04G3098 Fragaria x ananassa HOM05D006772 ORTHO05D008367 1.7e-32 142.9 135 59.3
Lj2g0019736 Lotus japonicus HOM05D006772 ORTHO05D008367 1.7e-32 142.9 135 59.3
Prupe.5G037100 Prunus persica HOM05D006772 ORTHO05D008367 2.9e-32 142.1 127 58.3
Glyma.05G111700 Glycine max HOM05D006772 ORTHO05D008367 3.7e-32 141.7 130 56.2
Gorai.003G181100 Gossypium raimondii HOM05D006772 ORTHO05D008367 3.7e-32 141.7 124 60.5
Lsat_1_v5_gn_6_78680 Lactuca sativa HOM05D006772 ORTHO05D008367 3.7e-32 141.7 143 58.0
Sc01g0007510 Simmondsia chinensis HOM05D006772 ORTHO05D008367 3.7e-32 141.7 129 60.5
TAR375G0733 Trochodendron aralioides HOM05D006772 ORTHO05D008367 3.7e-32 141.7 128 60.2
TWI15G0236 Tripterygium wilfordii HOM05D006772 ORTHO05D008367 4.9e-32 141.4 124 64.5
Gohir.D03G170700 Gossypium hirsutum HOM05D006772 ORTHO05D008367 6.4e-32 141.0 124 60.5
Gohir.D12G211500 Gossypium hirsutum HOM05D006772 ORTHO05D008367 6.4e-32 141.0 126 61.1
Phvul.002G006800 Phaseolus vulgaris HOM05D006772 ORTHO05D008367 8.4e-32 140.6 130 57.7
CANSAT21G2446 Cannabis sativa HOM05D006772 ORTHO05D008367 1.4e-31 139.8 138 57.2
Eucgr.E00285 Eucalyptus grandis HOM05D006772 ORTHO05D008367 1.4e-31 139.8 134 59.7
Medtr5g014370 Medicago truncatula HOM05D006772 ORTHO05D008367 1.4e-31 139.8 134 56.0
Nn1g00537 Nelumbo nucifera HOM05D006772 ORTHO05D008367 1.4e-31 139.8 126 59.5
Nn6g33607 Nelumbo nucifera HOM05D006772 ORTHO05D008367 1.9e-31 139.4 124 60.5
Gohir.A12G208800 Gossypium hirsutum HOM05D006772 ORTHO05D008367 2.4e-31 139.0 126 60.3
Gorai.008G227000 Gossypium raimondii HOM05D006772 ORTHO05D008367 2.4e-31 139.0 126 60.3
Glyma.17G155300 Glycine max HOM05D006772 ORTHO05D008367 4.1e-31 138.3 137 52.6
CiPaw.12G062700 Carya illinoinensis HOM05D006772 ORTHO05D008367 5.4e-31 137.9 138 58.7
PGSC0003DMG400043394 Solanum tuberosum HOM05D006772 ORTHO05D008367 5.4e-31 137.9 124 59.7
ECA240G4560 Erigeron canadensis HOM05D000236 ORTHO05D000192 7.1e-31 137.5 118 62.7
Solyc08g077020.1 Solanum lycopersicum HOM05D006772 ORTHO05D008367 7.1e-31 137.5 124 59.7
Sopen08g025600 Solanum pennellii HOM05D006772 ORTHO05D008367 7.1e-31 137.5 124 59.7
Lalb_Chr16g0379141 Lupinus albus HOM05D006772 ORTHO05D008367 9.2e-31 137.1 132 53.8
Ca_24649_v3 Cicer arietinum L. HOM05D006772 ORTHO05D008367 1.2e-30 136.7 128 57.0
Nitab4.5_0001666g0010 Nicotiana tabacum HOM05D006772 ORTHO05D008367 3.5e-30 135.2 124 58.9
TWI60G0285 Tripterygium wilfordii HOM05D006772 ORTHO05D008367 3.5e-30 135.2 124 58.9
Sed0022952 Sechium edule HOM05D006772 ORTHO05D008367 6.0e-30 134.4 129 52.7
MELO3C003403.2 Cucumis melo HOM05D006772 ORTHO05D008367 7.8e-30 134.0 136 55.1
CsaV3_3G049240 Cucumis sativus L. HOM05D006772 ORTHO05D008367 1.0e-29 133.7 136 54.4
FAN13G1934 Fragaria x ananassa HOM05D006772 ORTHO05D008367 1.0e-29 133.7 124 60.5
PGR042G0478 Punica granatum HOM05D006772 ORTHO05D008367 1.7e-29 132.9 130 58.5
VMungo0251G2965 Vigna mungo HOM05D006772 ORTHO05D008367 2.3e-29 132.5 131 51.9
Psat2g173920 Pisum sativum HOM05D006772 ORTHO05D008367 5.1e-29 131.3 136 52.2
Lj4g0015139 Lotus japonicus HOM05D006772 ORTHO05D008367 8.6e-29 130.6 132 51.5
PGR031G2239 Punica granatum HOM05D006772 ORTHO05D008367 1.1e-28 130.2 140 54.3
TPR.G7824 Trifolium pratense HOM05D006772 ORTHO05D008367 2.5e-28 129.0 127 55.1
Lalb_Chr05g0213971 Lupinus albus HOM05D006772 ORTHO05D008367 3.3e-28 128.6 128 53.9
Sed0027084 Sechium edule HOM05D006772 ORTHO05D008367 3.3e-28 128.6 133 54.1
Ah.12g054950 Amaranthus hybridus HOM05D006772 ORTHO05D008367 2.1e-27 125.9 108 63.0
DCAR_024967 Daucus carota HOM05D006772 ORTHO05D008367 2.4e-26 122.5 137 54.7
Gohir.A11G030300 Gossypium hirsutum HOM05D006772 ORTHO05D008367 2.4e-26 122.5 133 53.4
Lj4g0019114 Lotus japonicus HOM05D006772 ORTHO05D008367 6.8e-26 120.9 133 50.4
Sp4g17500 Schrenkiella parvula HOM05D006772 ORTHO05D008367 2.6e-25 119.0 125 51.2
PGSC0003DMG400036785 Solanum tuberosum HOM05D006772 ORTHO05D008367 4.4e-25 118.2 108 59.3
THA.LOC104807956 Tarenaya hassleriana HOM05D006772 ORTHO05D008367 4.4e-25 118.2 125 52.0
CARHR129440 Cardamine hirsuta HOM05D006772 ORTHO05D008367 9.9e-25 117.1 126 52.4
AT2G35290 Arabidopsis thaliana HOM05D006772 ORTHO05D008367 2.2e-24 115.9 126 52.4
A05p10490 Brassica napus HOM05D006772 ORTHO05D008367 3.8e-24 115.2 125 48.8
BraA05t19987Z Brassica rapa HOM05D006772 ORTHO05D008367 3.8e-24 115.2 125 48.8
BolC4t22934H Brassica oleracea HOM05D006772 ORTHO05D008367 4.9e-24 114.8 125 48.0
BcaB02g09448 Brassica carinata HOM05D006772 ORTHO05D008367 6.4e-24 114.4 125 48.8
BcaB02g09453 Brassica carinata HOM05D006772 ORTHO05D008367 8.4e-24 114.0 125 48.0
BcaB02g09458 Brassica carinata HOM05D006772 ORTHO05D008367 8.4e-24 114.0 125 48.0
BcaB02g09462 Brassica carinata HOM05D006772 ORTHO05D008367 8.4e-24 114.0 125 48.0
BcaB06g28837 Brassica carinata HOM05D006772 ORTHO05D008367 8.4e-24 114.0 125 50.4
BcaC02g11632 Brassica carinata HOM05D006772 ORTHO05D008367 8.4e-24 114.0 125 48.0
C04p12890 Brassica napus HOM05D006772 ORTHO05D008367 8.4e-24 114.0 125 48.0
C04p64260 Brassica napus HOM05D006772 ORTHO05D008367 8.4e-24 114.0 125 49.6
Thhalv10017432m.g Eutrema salsugineum HOM05D006772 ORTHO05D008367 1.9e-23 112.8 125 48.8
MBI02_g14426_MAGBIO Magnolia biondii HOM05D006772 ORTHO05D008367 1.9e-23 112.8 124 51.6
A04p26870 Brassica napus HOM05D006772 ORTHO05D008367 2.4e-23 112.5 125 48.8
BraA04t18187Z Brassica rapa HOM05D006772 ORTHO05D008367 2.4e-23 112.5 125 48.8
Carub.0004s1698 Capsella rubella HOM05D006772 ORTHO05D008367 3.2e-23 112.1 124 51.6
Aa31LG9G15310 Aethionema arabicum HOM05D006772 ORTHO05D008367 7.1e-23 110.9 128 49.2
BcaC02g07718 Brassica carinata HOM05D006772 ORTHO05D008367 6.0e-22 107.8 125 48.0
BolC4t27910H Brassica oleracea HOM05D006772 ORTHO05D008367 6.0e-22 107.8 125 48.0
AL4G31320 Arabidopsis lyrata HOM05D006772 ORTHO05D008367 7.8e-22 107.5 116 52.6
CDE08G0662 Ceratophyllum demersum HOM05D006772 ORTHO05D008367 7.8e-22 107.5 118 47.5
CDE02G2078 Ceratophyllum demersum HOM05D004438 ORTHO05D005256 1.7e-21 106.3 119 47.9
MBI05_g46462_MAGBIO Magnolia biondii HOM05D006772 ORTHO05D008367 8.1e-19 97.4 132 47.0
Gohir.D11G028900 Gossypium hirsutum HOM05D006772 ORTHO05D008367 3.1e-18 95.5 105 51.4
HPP92_011259 Vanilla planifolia HOM05D006772 ORTHO05D008367 2.0e-17 92.8 121 44.6
CiPaw.11G092300 Carya illinoinensis HOM05D006772 ORTHO05D008367 6.4e-16 87.8 124 48.4
Dinv28946 Davidia involucrata HOM05D006772 ORTHO05D008367 6.4e-16 87.8 96 53.1
Os03g0170100 Oryza sativa ssp. japonica HOM05D006772 ORTHO05D008367 8.4e-16 87.4 110 49.1
SEGI_37864 Sequoiadendron giganteum HOM05D006772 ORTHO05D008367 7.1e-15 84.3 105 40.0
Zm00001eb402290 Zea mays HOM05D006772 ORTHO05D008367 7.1e-15 84.3 109 45.0
ATR0564G457 Amborella trichopoda HOM05D006772 ORTHO05D008367 9.3e-15 84.0 93 46.2
Gorai.007G031500 Gossypium raimondii HOM05D006772 ORTHO05D008367 1.6e-14 83.2 97 49.5
Peaxi162Scf00102g00514 Petunia axillaris HOM05D006772 ORTHO05D008367 1.6e-14 83.2 125 44.8
EL10Ac5g12135 Beta vulgaris HOM05D003523 ORTHO05D008367 1.1e-12 77.0 98 42.9
SEGI_18606 Sequoiadendron giganteum HOM05D006772 ORTHO05D008367 1.8e-10 69.7 107 38.3
MBI02_g18931_MAGBIO Magnolia biondii HOM05D006772 ORTHO05D008367 3.4e-09 65.5 55 61.8
Pp3c1_8870 Physcomitrium patens HOM05D006772 ORTHO05D008367 2.7e-06 55.8 121 28.9
Rhsim12G0212400 Rhododendron simsii HOM05D001618 ORTHO05D001486 7.9e-06 54.3 116 31.0


User provided reference genes

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