Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10033058m.g Citrus clementina HOM05D006442 ORTHO05D007980 9.3e-74 280.0 133 100.0
Atru.chr11.2670 Acer truncatum HOM05D006442 ORTHO05D007980 3.1e-61 238.4 133 82.7
Dinv43911 Davidia involucrata HOM05D006442 ORTHO05D007980 9.0e-61 236.9 130 83.1
MD07G1004900 Malus domestica HOM05D006442 ORTHO05D007980 1.2e-60 236.5 133 79.7
CSS0016496 Camellia sinensis var. sinensis HOM05D006442 ORTHO05D007980 5.9e-60 234.2 130 81.5
Prupe.2G007200 Prunus persica HOM05D006442 ORTHO05D007980 5.9e-60 234.2 133 79.7
arahy.Tifrunner.gnm1.ann1.9R1925 Arachis hypogaea HOM05D006442 ORTHO05D007980 1.3e-59 233.0 130 81.5
arahy.Tifrunner.gnm1.ann1.A55RA3 Arachis hypogaea HOM05D006442 ORTHO05D007980 1.3e-59 233.0 130 81.5
CSS0031684 Camellia sinensis var. sinensis HOM05D006442 ORTHO05D007980 1.7e-59 232.6 130 80.8
Cfa010728 Carpinus fangiana HOM05D006442 ORTHO05D007980 1.7e-59 232.6 133 78.9
Glyma.15G271700 Glycine max HOM05D006442 ORTHO05D007980 3.8e-59 231.5 130 81.5
Haze_03245 Corylus avellana HOM05D006442 ORTHO05D007980 5.0e-59 231.1 133 78.9
Oeu064276.1 Olea europaea HOM05D006442 ORTHO05D007980 1.1e-58 229.9 130 79.2
FvH4_7g00510 Fragaria vesca HOM05D006442 ORTHO05D007980 1.4e-58 229.6 133 78.2
FAN06G2479 Fragaria x ananassa HOM05D006442 ORTHO05D007980 1.4e-58 229.6 133 78.2
FAN10G1890 Fragaria x ananassa HOM05D006442 ORTHO05D007980 1.4e-58 229.6 133 78.2
Lj3g0007274 Lotus japonicus HOM05D006442 ORTHO05D007980 1.4e-58 229.6 130 80.8
FAN03G1462 Fragaria x ananassa HOM05D006442 ORTHO05D007980 3.2e-58 228.4 133 77.4
Glyma.08G151500 Glycine max HOM05D006442 ORTHO05D007980 3.2e-58 228.4 130 80.8
Rhsim07G0053100 Rhododendron simsii HOM05D006442 ORTHO05D007980 4.2e-58 228.0 130 79.2
RcHm_v2.0_Chr1g0314301 Rosa chinensis HOM05D006442 ORTHO05D007980 1.6e-57 226.1 133 76.7
VMungo1080G0583 Vigna mungo HOM05D006442 ORTHO05D007980 1.6e-57 226.1 130 80.0
CiPaw.12G060500 Carya illinoinensis HOM05D006442 ORTHO05D007980 2.1e-57 225.7 129 79.1
PGR042G3140 Punica granatum HOM05D006442 ORTHO05D007980 2.1e-57 225.7 133 77.4
VMungo1080G0430 Vigna mungo HOM05D006442 ORTHO05D007980 2.1e-57 225.7 129 79.8
Hma1.2p1_0010F.1_g007050 Hydrangea macrophylla HOM05D006442 ORTHO05D007980 2.7e-57 225.3 130 78.5
TWI09G1159 Tripterygium wilfordii HOM05D006442 ORTHO05D007980 2.7e-57 225.3 131 79.4
Solyc10g037980.2 Solanum lycopersicum HOM05D006442 ORTHO05D007980 3.6e-57 224.9 130 77.7
PGSC0003DMG400026375 Solanum tuberosum HOM05D006442 ORTHO05D007980 3.6e-57 224.9 130 77.7
GSVIVG01032037001 Vitis vinifera HOM05D006442 ORTHO05D007980 3.6e-57 224.9 130 80.8
CAN.G1110.8 Capsicum annuum HOM05D006442 ORTHO05D007980 7.9e-57 223.8 133 75.2
Eucgr.G03402 Eucalyptus grandis HOM05D006442 ORTHO05D007980 7.9e-57 223.8 130 80.0
Potri.001G225500 Populus trichocarpa HOM05D006442 ORTHO05D007980 7.9e-57 223.8 133 77.4
Actinidia20688 Actinidia chinensis HOM05D006442 ORTHO05D007980 1.0e-56 223.4 129 77.5
TAR633G2790 Trochodendron aralioides HOM05D006442 ORTHO05D007980 1.0e-56 223.4 131 77.1
TPR.G12183 Trifolium pratense HOM05D006442 ORTHO05D007980 1.4e-56 223.0 130 77.7
Manes.10G148300 Manihot esculenta HOM05D006442 ORTHO05D007980 1.8e-56 222.6 131 78.6
Cc02_g27340 Coffea canephora HOM05D006442 ORTHO05D007980 2.3e-56 222.2 131 77.1
Cc02_g27370 Coffea canephora HOM05D006442 ORTHO05D007980 2.3e-56 222.2 131 77.1
Actinidia21568 Actinidia chinensis HOM05D006442 ORTHO05D007980 3.9e-56 221.5 129 76.7
Sopen10g011600 Solanum pennellii HOM05D006442 ORTHO05D007980 3.9e-56 221.5 130 76.9
DCAR_006304 Daucus carota HOM05D006442 ORTHO05D007980 6.7e-56 220.7 133 75.9
Peaxi162Scf00045g00327 Petunia axillaris HOM05D006442 ORTHO05D007980 2.0e-55 219.2 133 71.4
Nn7g36056 Nelumbo nucifera HOM05D006442 ORTHO05D007980 3.3e-55 218.4 130 76.2
Sabra16G0134100 Salix brachista HOM05D006442 ORTHO05D007980 3.3e-55 218.4 133 75.9
MSTRG.28085 Avicennia marina HOM05D006442 ORTHO05D007980 5.7e-55 217.6 133 74.4
Medtr3g027090 Medicago truncatula HOM05D006442 ORTHO05D007980 5.7e-55 217.6 130 75.4
Gohir.D09G099100 Gossypium hirsutum HOM05D006442 ORTHO05D007980 7.4e-55 217.2 132 75.8
Gorai.006G116100 Gossypium raimondii HOM05D006442 ORTHO05D007980 7.4e-55 217.2 132 75.8
Nn2g15582 Nelumbo nucifera HOM05D006442 ORTHO05D007980 7.4e-55 217.2 129 76.0
Phvul.005G037200 Phaseolus vulgaris HOM05D006442 ORTHO05D007980 7.4e-55 217.2 130 76.2
Sed0019847 Sechium edule HOM05D006442 ORTHO05D007980 7.4e-55 217.2 134 76.1
Lsat_1_v5_gn_8_7620 Lactuca sativa HOM05D006442 ORTHO05D007980 1.3e-54 216.5 130 74.6
Lalb_Chr25g0283271 Lupinus albus HOM05D006442 ORTHO05D007980 1.7e-54 216.1 130 73.8
Oeu013593.2 Olea europaea HOM05D006442 ORTHO05D007980 2.8e-54 215.3 130 73.1
Gohir.A09G099700 Gossypium hirsutum HOM05D006442 ORTHO05D007980 3.7e-54 214.9 133 73.7
Phvul.005G038700 Phaseolus vulgaris HOM05D006442 ORTHO05D007980 4.8e-54 214.5 129 76.7
Duzib133G0004 Durio zibethinus HOM05D006442 ORTHO05D007980 6.3e-54 214.2 132 74.2
Aqoxy1G00188 Aquilegia oxysepala HOM05D006442 ORTHO05D007980 8.2e-54 213.8 130 73.8
Psat5g207000 Pisum sativum HOM05D006442 ORTHO05D007980 1.4e-53 213.0 130 73.8
Sc14g0005190 Simmondsia chinensis HOM05D006442 ORTHO05D007980 5.3e-53 211.1 130 72.3
Ah.16g101020 Amaranthus hybridus HOM05D006442 ORTHO05D007980 6.9e-53 210.7 130 74.6
SalBow5G2051 Salvia bowleyana HOM05D006442 ORTHO05D007980 6.9e-53 210.7 133 72.9
Migut.N01489 Erythranthe guttata HOM05D006442 ORTHO05D007980 1.2e-52 209.9 133 72.2
Nitab4.5_0002012g0020 Nicotiana tabacum HOM05D006442 ORTHO05D007980 1.5e-52 209.5 129 72.9
COL.COLO4_23906 Corchorus olitorius HOM05D006442 ORTHO05D007980 2.0e-52 209.1 134 74.6
SGA_v2.0_scaffold4G02243 Striga asiatica HOM05D006442 ORTHO05D007980 2.6e-52 208.8 133 72.2
SGA_v2.0_scaffold10G05439 Striga asiatica HOM05D006442 ORTHO05D007980 3.4e-52 208.4 133 70.7
Thecc.01G414800 Theobroma cacao HOM05D006442 ORTHO05D007980 4.5e-52 208.0 133 75.9
QL04p004786 Quercus lobata HOM05D006442 ORTHO05D007980 5.9e-52 207.6 173 59.5
AUR62009476 Chenopodium quinoa HOM05D006442 ORTHO05D007980 1.7e-51 206.1 129 73.6
ECA248G1263 Erigeron canadensis HOM05D006442 ORTHO05D007980 1.7e-51 206.1 131 71.8
CANSAT01G1452 Cannabis sativa HOM05D006442 ORTHO05D007980 2.9e-51 205.3 133 71.4
AUR62023154 Chenopodium quinoa HOM05D006442 ORTHO05D007980 2.9e-51 205.3 129 72.9
CAN.G1076.12 Capsicum annuum HOM05D006442 ORTHO05D007980 5.0e-51 204.5 129 72.9
HanXRQChr01g0018511 Helianthus annuus HOM05D006442 ORTHO05D007980 8.5e-51 203.8 130 72.3
EL10Ac2g04436 Beta vulgaris HOM05D006442 ORTHO05D007980 1.9e-50 202.6 130 70.0
CDE07G0477 Ceratophyllum demersum HOM05D006442 ORTHO05D007980 1.6e-49 199.5 130 67.7
Atru.chr11.2672 Acer truncatum HOM05D006442 ORTHO05D007980 3.6e-49 198.4 123 78.0
PSO384G2221 Papaver somniferum HOM05D006442 ORTHO05D007980 1.1e-47 193.4 130 69.2
PSO339G0425 Papaver somniferum HOM05D006442 ORTHO05D007980 7.4e-47 190.7 130 67.7
AUR62023155 Chenopodium quinoa HOM05D006442 ORTHO05D007980 4.8e-46 188.0 129 67.4
THA.LOC104823024 Tarenaya hassleriana HOM05D006442 ORTHO05D007980 1.4e-45 186.4 131 64.1
unitig_22.g5766 Utricularia gibba HOM05D006442 ORTHO05D007980 1.4e-45 186.4 131 64.1
AUR62009477 Chenopodium quinoa HOM05D006442 ORTHO05D007980 1.5e-44 183.0 129 64.3
BcaC06g31744 Brassica carinata HOM05D006442 ORTHO05D007980 1.3e-43 179.9 131 61.8
AT5G42850 Arabidopsis thaliana HOM05D006442 ORTHO05D007980 2.9e-43 178.7 131 62.6
AL8G18110 Arabidopsis lyrata HOM05D006442 ORTHO05D007980 3.8e-43 178.3 131 61.8
Thhalv10003289m.g Eutrema salsugineum HOM05D006442 ORTHO05D007980 5.0e-43 177.9 131 61.8
Sp2g07550 Schrenkiella parvula HOM05D006442 ORTHO05D007980 6.5e-43 177.6 132 61.4
Ca_27853_v3 Cicer arietinum L. HOM05D006442 ORTHO05D007980 8.5e-43 177.2 224 43.3
A06p48230 Brassica napus HOM05D006442 ORTHO05D007980 3.2e-42 175.3 131 59.5
BraA06t27691Z Brassica rapa HOM05D006442 ORTHO05D007980 3.2e-42 175.3 131 59.5
BcaC02g10802 Brassica carinata HOM05D006442 ORTHO05D007980 5.5e-42 174.5 131 59.5
C04p24990 Brassica napus HOM05D006442 ORTHO05D007980 5.5e-42 174.5 131 59.5
BolC4t23999H Brassica oleracea HOM05D006442 ORTHO05D007980 5.5e-42 174.5 131 59.5
Glyma.08G152300 Glycine max HOM05D006442 ORTHO05D007980 1.6e-41 172.9 130 63.8
Carub.0008s0607 Capsella rubella HOM05D006442 ORTHO05D007980 8.0e-41 170.6 131 59.5
CARHR181310 Cardamine hirsuta HOM05D006442 ORTHO05D007980 8.0e-41 170.6 132 59.8
SEGI_10267 Sequoiadendron giganteum HOM05D006442 ORTHO05D007980 9.7e-39 163.7 123 56.9
HPP92_018950 Vanilla planifolia HOM05D006442 ORTHO05D007980 3.7e-38 161.8 131 59.5
vmacro13638 Vaccinium macrocarpon HOM05D006442 ORTHO05D007980 4.1e-37 158.3 156 51.9
ATR0605G011 Amborella trichopoda HOM05D006442 ORTHO05D007980 1.6e-36 156.4 130 53.8
Aa31LG8G5740 Aethionema arabicum HOM05D000097 ORTHO05D000041 3.5e-36 155.2 126 54.8
Mapoly0028s0130 Marchantia polymorpha HOM05D006442 ORTHO05D007980 2.5e-34 149.1 130 51.5
MBI01_g15755_MAGBIO Magnolia biondii HOM05D006442 ORTHO05D007980 5.5e-34 147.9 83 77.1
AagrBONN_evm.TU.Sc2ySwM_117.1593 Anthoceros agrestis HOM05D006442 ORTHO05D007980 9.4e-34 147.1 129 53.5
Os06g0320000 Oryza sativa ssp. japonica HOM05D006442 ORTHO05D007980 9.4e-34 147.1 137 51.1
Zm00001eb381670 Zea mays HOM05D006442 ORTHO05D007980 2.7e-33 145.6 135 54.1
CsaV3_3G032370 Cucumis sativus L. HOM05D006442 ORTHO05D007980 1.4e-32 143.3 82 80.5
Pp3c1_3150 Physcomitrium patens HOM05D006442 ORTHO05D007980 4.0e-32 141.7 131 49.6
SMO244G0064 Selaginella moellendorffii HOM05D006442 ORTHO05D007980 6.8e-32 141.0 130 48.5
CAN.G37.7 Capsicum annuum HOM05D006442 ORTHO05D007980 3.4e-31 138.7 102 59.8
Nitab4.5_0004606g0020 Nicotiana tabacum HOM05D006442 ORTHO05D007980 1.6e-28 129.8 83 71.1
ClCG10G012580 Citrullus lanatus HOM05D002156 ORTHO05D002328 2.7e-25 119.0 69 78.3
MD02G1317000 Malus domestica HOM05D006442 ORTHO05D007980 1.0e-24 117.1 67 76.1
CBR_g40140 Chara braunii HOM05D006442 ORTHO05D007980 3.0e-24 115.5 110 52.7
MD01G1062200 Malus domestica HOM05D006442 ORTHO05D007980 1.3e-22 110.2 72 75.0
Aa31LG8G5750 Aethionema arabicum HOM05D006442 ORTHO05D007980 1.8e-16 89.7 121 38.8
CAN.G290.22 Capsicum annuum HOM05D006442 ORTHO05D007980 9.8e-15 84.0 55 60.0
CsaV3_3G032380 Cucumis sativus L. HOM05D002156 ORTHO05D002328 3.7e-14 82.0 48 79.2
MELO3C023952.2 Cucumis melo HOM05D002156 ORTHO05D002328 1.4e-13 80.1 48 75.0
AL8G12830 Arabidopsis lyrata HOM05D006442 ORTHO05D007980 9.2e-13 77.4 53 64.2
MD00G1052400 Malus domestica HOM05D006442 ORTHO05D007980 3.9e-11 72.0 46 69.6
Cre07.g315100 Chlamydomonas reinhardtii HOM05D006442 ORTHO05D007980 1.1e-10 70.5 70 47.1
AL5G40550 Arabidopsis lyrata HOM05D006442 ORTHO05D007980 5.6e-10 68.2 47 63.8


User provided reference genes

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