Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10033010m.g Citrus clementina HOM05D007293 ORTHO05D009143 2.0e-69 265.8 145 100.0
Atru.chr11.2025 Acer truncatum HOM05D007293 ORTHO05D009143 1.7e-36 156.4 104 84.6
TWI75G0451 Tripterygium wilfordii HOM05D007293 ORTHO05D009143 3.5e-26 122.1 109 67.9
Thecc.02G249100 Theobroma cacao HOM05D007293 ORTHO05D009143 4.6e-26 121.7 105 69.5
THA.LOC104822141 Tarenaya hassleriana HOM05D007293 ORTHO05D009143 1.8e-25 119.8 106 67.9
THA.LOC104808972 Tarenaya hassleriana HOM05D007293 ORTHO05D009143 2.3e-25 119.4 106 67.9
MD13G1091900 Malus domestica HOM05D007293 ORTHO05D009143 1.9e-24 116.3 107 66.4
PGR119G0124 Punica granatum HOM05D007293 ORTHO05D009143 1.9e-24 116.3 107 63.6
Duzib268G1575 Durio zibethinus HOM05D007293 ORTHO05D009143 7.4e-24 114.4 104 65.4
MD16G1092500 Malus domestica HOM05D007293 ORTHO05D009143 1.6e-23 113.2 106 67.0
Gohir.A03G139900 Gossypium hirsutum HOM05D007293 ORTHO05D009143 2.1e-23 112.8 105 65.7
Gorai.005G182700 Gossypium raimondii HOM05D007293 ORTHO05D009143 3.7e-23 112.1 105 64.8
Prupe.1G253900 Prunus persica HOM05D007293 ORTHO05D009143 3.7e-23 112.1 106 66.0
RcHm_v2.0_Chr4g0443841 Rosa chinensis HOM05D007293 ORTHO05D009143 8.2e-23 110.9 107 63.6
Gohir.D02G162700 Gossypium hirsutum HOM05D007293 ORTHO05D009143 1.4e-22 110.2 105 63.8
FAN22G1529 Fragaria x ananassa HOM05D007293 ORTHO05D009143 2.4e-22 109.4 107 64.5
COL.COLO4_36768 Corchorus olitorius HOM05D007293 ORTHO05D009143 3.1e-22 109.0 99 66.7
Eucgr.H02610 Eucalyptus grandis HOM05D007293 ORTHO05D009143 5.3e-22 108.2 114 57.0
RcHm_v2.0_Chr4g0443851 Rosa chinensis HOM05D007293 ORTHO05D009143 6.9e-22 107.8 104 63.5
FAN12G1260 Fragaria x ananassa HOM05D007293 ORTHO05D009143 9.0e-22 107.5 107 63.6
FAN17G1887 Fragaria x ananassa HOM05D007293 ORTHO05D009143 9.0e-22 107.5 107 62.6
Glyma.02G034600 Glycine max HOM05D007293 ORTHO05D009143 1.2e-21 107.1 103 62.1
Manes.13G030700 Manihot esculenta HOM05D007293 ORTHO05D009143 2.6e-21 105.9 112 59.8
FvH4_4g34460 Fragaria vesca HOM05D007293 ORTHO05D009143 5.8e-21 104.8 107 62.6
CiPaw.05G150900 Carya illinoinensis HOM05D007293 ORTHO05D009143 3.8e-20 102.1 103 64.1
Cfa009144 Carpinus fangiana HOM05D007293 ORTHO05D009143 1.1e-19 100.5 108 60.2
Prupe.5G015600 Prunus persica HOM05D007293 ORTHO05D009143 1.4e-19 100.1 104 62.5
Duzib251G0045 Durio zibethinus HOM05D007293 ORTHO05D009143 1.9e-19 99.8 101 60.4
Phvul.002G071600 Phaseolus vulgaris HOM05D007293 ORTHO05D009143 1.9e-19 99.8 105 61.0
AL2G29660 Arabidopsis lyrata HOM05D007293 ORTHO05D009143 2.5e-19 99.4 107 57.9
Carub.0002s1704 Capsella rubella HOM05D007293 ORTHO05D009143 3.2e-19 99.0 107 58.9
CANSAT01G1482 Cannabis sativa HOM05D007293 ORTHO05D009143 5.5e-19 98.2 106 59.4
Thhalv10019350m.g Eutrema salsugineum HOM05D007293 ORTHO05D009143 9.3e-19 97.4 107 57.0
CARHR063530 Cardamine hirsuta HOM05D007293 ORTHO05D009143 1.6e-18 96.7 107 56.1
Psat0s2875g0160 Pisum sativum HOM05D007293 ORTHO05D009143 2.7e-18 95.9 105 58.1
Sp5g25470 Schrenkiella parvula HOM05D007293 ORTHO05D009143 3.5e-18 95.5 107 54.2
TPR.G13591 Trifolium pratense HOM05D007293 ORTHO05D009143 3.5e-18 95.5 103 56.3
AT1G70350 Arabidopsis thaliana HOM05D007293 ORTHO05D009143 4.6e-18 95.1 107 56.1
BcaC08g45820 Brassica carinata HOM05D007293 ORTHO05D009143 7.9e-18 94.4 102 55.9
ClCG08G018060 Citrullus lanatus HOM05D007293 ORTHO05D009143 7.9e-18 94.4 110 54.5
Lalb_Chr09g0326381 Lupinus albus HOM05D007293 ORTHO05D009143 7.9e-18 94.4 103 55.3
Lj2g0011400 Lotus japonicus HOM05D007293 ORTHO05D009143 1.0e-17 94.0 109 56.9
Psat2g106240 Pisum sativum HOM05D007293 ORTHO05D009143 5.1e-17 91.7 105 55.2
Dinv33495 Davidia involucrata HOM05D007293 ORTHO05D009143 1.5e-16 90.1 111 52.3
arahy.Tifrunner.gnm1.ann1.F37JRW Arachis hypogaea HOM05D007293 ORTHO05D009143 3.3e-16 89.0 100 57.0
A02p16490 Brassica napus HOM05D007293 ORTHO05D009143 3.3e-16 89.0 106 53.8
BraA02t06707Z Brassica rapa HOM05D007293 ORTHO05D009143 3.3e-16 89.0 106 53.8
BcaB05g24561 Brassica carinata HOM05D007293 ORTHO05D009143 4.3e-16 88.6 105 54.3
C06p36130 Brassica napus HOM05D007293 ORTHO05D009143 4.3e-16 88.6 97 54.6
Hund05995 Selenicereus undatus HOM05D007293 ORTHO05D009143 4.3e-16 88.6 113 52.2
TPR.G13583 Trifolium pratense HOM05D007293 ORTHO05D009143 5.7e-16 88.2 110 56.4
BcaB03g15542 Brassica carinata HOM05D007293 ORTHO05D009143 7.4e-16 87.8 107 56.1
BcaC03g15179 Brassica carinata HOM05D007293 ORTHO05D009143 7.4e-16 87.8 104 51.0
BolC6t38732H Brassica oleracea HOM05D007293 ORTHO05D009143 1.6e-15 86.7 96 54.2
QL03p061237 Quercus lobata HOM05D007293 ORTHO05D009143 2.2e-15 86.3 112 56.2
arahy.Tifrunner.gnm1.ann1.HDCN36 Arachis hypogaea HOM05D007293 ORTHO05D009143 3.7e-15 85.5 100 56.0
VMungo1215G2593 Vigna mungo HOM05D007293 ORTHO05D009143 4.8e-15 85.1 98 55.1
Haze_12178 Corylus avellana HOM05D007293 ORTHO05D009143 6.3e-15 84.7 102 57.8
C02p27590 Brassica napus HOM05D007293 ORTHO05D009143 1.1e-14 84.0 103 49.5
Ca_13998_v3 Cicer arietinum L. HOM05D007293 ORTHO05D009143 1.8e-14 83.2 102 53.9
Medtr5g034340 Medicago truncatula HOM05D007293 ORTHO05D009143 1.8e-14 83.2 101 52.5
EL10Ac6g13673 Beta vulgaris HOM05D007293 ORTHO05D009143 4.1e-14 82.0 112 51.8
A07p31100 Brassica napus HOM05D007293 ORTHO05D009143 5.3e-14 81.6 101 53.5
BraA07t30744Z Brassica rapa HOM05D007293 ORTHO05D009143 5.3e-14 81.6 101 53.5
Dinv35058 Davidia involucrata HOM05D007293 ORTHO05D009143 6.9e-14 81.3 111 50.5
BolC2t08814H Brassica oleracea HOM05D007293 ORTHO05D009143 2.0e-13 79.7 103 48.5
FAN07G2443 Fragaria x ananassa HOM05D007293 ORTHO05D009143 2.0e-13 79.7 93 60.2
CSS0045153 Camellia sinensis var. sinensis HOM05D007293 ORTHO05D009143 5.9e-13 78.2 107 49.5
Sc04g0009130 Simmondsia chinensis HOM05D007293 ORTHO05D009143 5.9e-13 78.2 103 51.5
CsaV3_4G037870 Cucumis sativus L. HOM05D001719 ORTHO05D008883 1.3e-12 77.0 103 47.6
AUR62005378 Chenopodium quinoa HOM05D007293 ORTHO05D009143 2.9e-12 75.9 103 49.5
Migut.K01369 Erythranthe guttata HOM05D007293 ORTHO05D009143 2.9e-12 75.9 109 51.4
TAR622G0242 Trochodendron aralioides HOM05D007293 ORTHO05D009143 5.0e-12 75.1 107 49.5
Migut.H00123 Erythranthe guttata HOM05D007293 ORTHO05D009143 6.5e-12 74.7 110 50.9
AUR62014041 Chenopodium quinoa HOM05D007293 ORTHO05D009143 8.5e-12 74.3 106 50.0
Lj7A591G78 Lonicera japonica HOM05D007293 ORTHO05D009143 8.5e-12 74.3 112 48.2
Cc07_g02290 Coffea canephora HOM05D007293 ORTHO05D009143 1.4e-11 73.6 105 50.5
CSS0040497 Camellia sinensis var. sinensis HOM05D007293 ORTHO05D009143 1.9e-11 73.2 107 47.7
Nn3g16892 Nelumbo nucifera HOM05D007293 ORTHO05D009143 4.2e-11 72.0 47 78.7
GSVIVG01032483001 Vitis vinifera HOM05D007293 ORTHO05D009143 5.5e-11 71.6 112 46.4
CDE04G1122 Ceratophyllum demersum HOM05D007293 ORTHO05D009143 9.4e-11 70.9 91 49.5
CDE06G2495 Ceratophyllum demersum HOM05D007293 ORTHO05D009143 1.2e-10 70.5 108 50.9
Oeu062917.1 Olea europaea HOM05D007293 ORTHO05D009143 1.2e-10 70.5 103 49.5
MSTRG.24016 Avicennia marina HOM05D007293 ORTHO05D009143 1.6e-10 70.1 104 48.1
CSS0015603 Camellia sinensis var. sinensis HOM05D007293 ORTHO05D009143 1.6e-10 70.1 103 47.6
BcaB07g33183 Brassica carinata HOM05D027076 ORTHO05D027107 4.6e-10 68.6 88 55.7
Lsat_1_v5_gn_4_182280 Lactuca sativa HOM05D007293 ORTHO05D009143 4.6e-10 68.6 105 46.7
HanXRQChr08g0220621 Helianthus annuus HOM05D007293 ORTHO05D009143 6.1e-10 68.2 102 47.1
DCAR_011205 Daucus carota HOM05D007293 ORTHO05D009143 1.4e-09 67.0 111 47.7
PSO063G5020 Papaver somniferum HOM05D007293 ORTHO05D009143 1.8e-09 66.6 96 51.0
Os01g0738000 Oryza sativa ssp. japonica HOM05D007293 ORTHO05D009143 8.8e-09 64.3 105 48.6
SalBow1G2453 Salvia bowleyana HOM05D005882 ORTHO05D009143 1.5e-08 63.5 99 48.5
vmacro05819 Vaccinium macrocarpon HOM05D007293 ORTHO05D009143 2.0e-08 63.2 105 46.7
Aqoxy3G02974 Aquilegia oxysepala HOM05D007293 ORTHO05D009143 2.5e-08 62.8 112 46.4
CSS0016211 Camellia sinensis var. sinensis HOM05D007293 ORTHO05D009143 2.5e-08 62.8 103 43.7
MBI10_g11075_MAGBIO Magnolia biondii HOM05D007293 ORTHO05D009143 2.5e-08 62.8 54 66.7
Zm00001eb153880 Zea mays HOM05D007293 ORTHO05D009143 3.3e-08 62.4 108 46.3
PSO832G1108 Papaver somniferum HOM05D007293 ORTHO05D009143 5.7e-08 61.6 96 50.0
CSS0001505 Camellia sinensis var. sinensis HOM05D007293 ORTHO05D009143 9.7e-08 60.8 98 46.9
Hma1.2p1_0802F.1_g220360 Hydrangea macrophylla HOM05D007293 ORTHO05D009143 9.7e-08 60.8 106 46.2
Rhsim10G0022800 Rhododendron simsii HOM05D007293 ORTHO05D009143 1.3e-07 60.5 105 44.8
Thecc.09G041400 Theobroma cacao HOM05D007491 ORTHO05D009489 6.3e-07 58.2 69 46.4
Medtr5g034360 Medicago truncatula HOM05D007293 ORTHO05D009143 1.1e-06 57.4 100 47.0
PSO339G0117 Papaver somniferum HOM05D007293 ORTHO05D009143 1.4e-06 57.0 96 47.9
HPP92_019952 Vanilla planifolia HOM05D007293 ORTHO05D009143 1.4e-06 57.0 102 45.1
Actinidia06026 Actinidia chinensis HOM05D007293 ORTHO05D009143 1.8e-06 56.6 55 58.2
COL.COLO4_18682 Corchorus olitorius HOM05D007491 ORTHO05D009489 4.1e-06 55.5 69 44.9
ECA246G2262 Erigeron canadensis HOM05D007293 ORTHO05D009143 9.1e-06 54.3 90 42.2
Gohir.D06G094200 Gossypium hirsutum HOM05D007491 ORTHO05D009489 9.1e-06 54.3 98 38.8
Gorai.010G108700 Gossypium raimondii HOM05D007491 ORTHO05D009489 9.1e-06 54.3 136 33.1


User provided reference genes

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