Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10032989m.g Citrus clementina HOM05D006937 ORTHO05D008747 7.1e-78 293.9 152 100.0
CiPaw.06G089000 Carya illinoinensis HOM05D006937 ORTHO05D008747 5.7e-67 257.7 152 86.2
Atru.chr11.1713 Acer truncatum HOM05D006937 ORTHO05D008747 9.6e-67 256.9 152 88.2
Gohir.A05G305601 Gossypium hirsutum HOM05D006937 ORTHO05D008747 1.3e-66 256.5 152 85.5
Thecc.02G339100 Theobroma cacao HOM05D006937 ORTHO05D008747 1.3e-66 256.5 152 86.8
COL.COLO4_27967 Corchorus olitorius HOM05D006937 ORTHO05D008747 4.8e-66 254.6 152 84.9
Glyma.01G053200 Glycine max HOM05D006937 ORTHO05D008747 8.2e-66 253.8 152 84.2
Gorai.009G325600 Gossypium raimondii HOM05D006937 ORTHO05D008747 1.1e-65 253.4 152 84.2
Eucgr.G02475 Eucalyptus grandis HOM05D006937 ORTHO05D008747 1.4e-65 253.1 152 84.2
Manes.01G032100 Manihot esculenta HOM05D006937 ORTHO05D008747 1.4e-65 253.1 152 84.9
QL03p069840 Quercus lobata HOM05D006937 ORTHO05D008747 1.4e-65 253.1 151 85.4
Gohir.D05G305600 Gossypium hirsutum HOM05D006937 ORTHO05D008747 2.4e-65 252.3 152 83.6
Glyma.02G111700 Glycine max HOM05D006937 ORTHO05D008747 6.9e-65 250.8 152 83.6
TWI60G0457 Tripterygium wilfordii HOM05D006937 ORTHO05D008747 9.0e-65 250.4 148 85.8
Prupe.1G280000 Prunus persica HOM05D006937 ORTHO05D008747 2.6e-64 248.8 152 84.2
Lj1g0016193 Lotus japonicus HOM05D006937 ORTHO05D008747 4.5e-64 248.1 152 83.6
CsaV3_7G033500 Cucumis sativus L. HOM05D006937 ORTHO05D008747 1.3e-63 246.5 151 80.8
CSS0011527 Camellia sinensis var. sinensis HOM05D006937 ORTHO05D008747 1.7e-63 246.1 145 86.2
MELO3C024261.2 Cucumis melo HOM05D006937 ORTHO05D008747 1.7e-63 246.1 151 81.5
VMungo1215G2773 Vigna mungo HOM05D006937 ORTHO05D008747 3.8e-63 245.0 151 82.8
Potri.008G091400 Populus trichocarpa HOM05D006937 ORTHO05D008747 5.0e-63 244.6 152 81.6
MD13G1068100 Malus domestica HOM05D006937 ORTHO05D008747 6.5e-63 244.2 153 83.0
MD16G1066900 Malus domestica HOM05D006937 ORTHO05D008747 1.4e-62 243.0 153 82.4
Sed0004013 Sechium edule HOM05D006937 ORTHO05D008747 1.4e-62 243.0 152 80.3
Sed0007221 Sechium edule HOM05D006937 ORTHO05D008747 1.4e-62 243.0 152 80.3
Lj6g0000786 Lotus japonicus HOM05D006937 ORTHO05D008747 1.9e-62 242.7 152 80.3
Phvul.001G169600 Phaseolus vulgaris HOM05D006937 ORTHO05D008747 1.9e-62 242.7 152 80.9
Dinv34099 Davidia involucrata HOM05D003669 ORTHO05D005046 9.3e-62 240.4 143 83.9
Medtr5g042620 Medicago truncatula HOM05D006937 ORTHO05D008747 1.6e-61 239.6 152 78.9
TAR629G2875 Trochodendron aralioides HOM05D006937 ORTHO05D008747 1.6e-61 239.6 145 82.8
CAN.G964.22 Capsicum annuum HOM05D006937 ORTHO05D008747 2.1e-61 239.2 143 83.9
DCAR_018308 Daucus carota HOM05D006937 ORTHO05D008747 2.1e-61 239.2 143 82.5
CAN.G1642.3 Capsicum annuum HOM05D006937 ORTHO05D008747 2.7e-61 238.8 143 83.2
Nn3g17337 Nelumbo nucifera HOM05D006937 ORTHO05D008747 2.7e-61 238.8 145 84.1
Lalb_Chr10g0098481 Lupinus albus HOM05D006937 ORTHO05D008747 3.6e-61 238.4 152 80.3
SGA_v2.0_scaffold287G47146 Striga asiatica HOM05D006937 ORTHO05D008747 6.1e-61 237.7 141 83.7
MSTRG.2329 Avicennia marina HOM05D006937 ORTHO05D008747 1.3e-60 236.5 141 83.7
FvH4_4g30700 Fragaria vesca HOM05D006937 ORTHO05D008747 3.0e-60 235.3 152 77.0
CANSAT64G0520 Cannabis sativa HOM05D006937 ORTHO05D008747 5.1e-60 234.6 152 77.6
FAN17G2174 Fragaria x ananassa HOM05D006937 ORTHO05D008747 8.7e-60 233.8 152 76.3
Sopen05g007730 Solanum pennellii HOM05D006937 ORTHO05D008747 8.7e-60 233.8 143 79.0
PGSC0003DMG401028340 Solanum tuberosum HOM05D006937 ORTHO05D008747 8.7e-60 233.8 143 80.4
arahy.Tifrunner.gnm1.ann1.TRF8LB Arachis hypogaea HOM05D006937 ORTHO05D008747 1.1e-59 233.4 152 78.3
RcHm_v2.0_Chr4g0439101 Rosa chinensis HOM05D006937 ORTHO05D008747 1.5e-59 233.0 152 76.3
EL10Ac6g13467 Beta vulgaris HOM05D006937 ORTHO05D008747 1.9e-59 232.6 143 79.7
GSVIVG01025409001 Vitis vinifera HOM05D006937 ORTHO05D008747 3.3e-59 231.9 143 81.8
FAN07G0310 Fragaria x ananassa HOM05D006937 ORTHO05D008747 4.3e-59 231.5 152 75.7
Migut.E00068 Erythranthe guttata HOM05D006937 ORTHO05D008747 5.7e-59 231.1 136 82.4
Eucgr.D01709 Eucalyptus grandis HOM05D006937 ORTHO05D008747 5.7e-59 231.1 152 78.9
SGA_v2.0_scaffold114G32026 Striga asiatica HOM05D006937 ORTHO05D008747 5.7e-59 231.1 151 78.8
HanXRQChr17g0537301 Helianthus annuus HOM05D006937 ORTHO05D008747 2.2e-58 229.2 139 81.3
ATR0730G163 Amborella trichopoda HOM05D006937 ORTHO05D008747 2.8e-58 228.8 141 81.6
Haze_11954 Corylus avellana HOM05D006937 ORTHO05D008747 4.8e-58 228.0 161 75.8
arahy.Tifrunner.gnm1.ann1.A48TS2 Arachis hypogaea HOM05D006937 ORTHO05D008747 1.4e-57 226.5 159 74.8
Zm00001eb326530 Zea mays HOM05D006937 ORTHO05D008747 1.4e-57 226.5 139 81.3
PSO675G6138 Papaver somniferum HOM05D006937 ORTHO05D008747 1.8e-57 226.1 142 80.3
Cc11_g12540 Coffea canephora HOM05D006937 ORTHO05D008747 2.4e-57 225.7 142 81.0
arahy.Tifrunner.gnm1.ann1.8BL9U8 Arachis hypogaea HOM05D006937 ORTHO05D008747 3.1e-57 225.3 151 76.8
Lsat_1_v5_gn_3_20221 Lactuca sativa HOM05D006937 ORTHO05D008747 3.1e-57 225.3 142 78.9
Os07g0595800 Oryza sativa ssp. japonica HOM05D006937 ORTHO05D008747 3.1e-57 225.3 139 80.6
ECA246G2190 Erigeron canadensis HOM05D006937 ORTHO05D008747 4.1e-57 224.9 141 78.0
Duzib268G1027 Durio zibethinus HOM05D006937 ORTHO05D008747 5.9e-56 221.1 152 77.0
Lj3A1033G46 Lonicera japonica HOM05D006937 ORTHO05D008747 1.3e-55 219.9 131 84.0
TPR.G19944 Trifolium pratense HOM05D006937 ORTHO05D008747 2.9e-55 218.8 152 70.4
Aqoxy3G03499 Aquilegia oxysepala HOM05D006937 ORTHO05D008747 8.5e-55 217.2 140 76.4
Aqoxy5G02063 Aquilegia oxysepala HOM05D006937 ORTHO05D008747 8.5e-55 217.2 140 76.4
Oeu016239.1 Olea europaea HOM05D006937 ORTHO05D008747 3.2e-54 215.3 129 82.9
Hund25447 Selenicereus undatus HOM05D006937 ORTHO05D008747 5.5e-54 214.5 143 75.5
unitig_744.g24284 Utricularia gibba HOM05D006937 ORTHO05D008747 4.6e-53 211.5 153 70.6
Psat2g127680 Pisum sativum HOM05D006937 ORTHO05D008747 6.1e-53 211.1 138 76.8
Nitab4.5_0000391g0170 Nicotiana tabacum HOM05D006937 ORTHO05D008747 1.8e-52 209.5 143 76.9
SEGI_41088 Sequoiadendron giganteum HOM05D006937 ORTHO05D008747 8.8e-52 207.2 138 73.2
AUR62024142 Chenopodium quinoa HOM05D006937 ORTHO05D008747 3.3e-51 205.3 143 72.7
PSO541G5056 Papaver somniferum HOM05D006937 ORTHO05D008747 1.3e-50 203.4 142 74.6
Nitab4.5_0008978g0010 Nicotiana tabacum HOM05D006937 ORTHO05D008747 3.7e-50 201.8 190 62.1
PGR119G1353 Punica granatum HOM05D006937 ORTHO05D008747 4.1e-49 198.4 157 65.6
AUR62005588 Chenopodium quinoa HOM05D006937 ORTHO05D008747 5.3e-49 198.0 140 71.4
PGR142G2813 Punica granatum HOM05D006937 ORTHO05D008747 9.1e-49 197.2 152 65.8
Rhsim12G0077900 Rhododendron simsii HOM05D006937 ORTHO05D008747 1.2e-48 196.8 111 88.3
Actinidia31958 Actinidia chinensis HOM05D003669 ORTHO05D005046 5.9e-48 194.5 148 70.3
Sc11g0000570 Simmondsia chinensis HOM05D006937 ORTHO05D008747 2.5e-46 189.1 109 82.6
Aqoxy5G02982 Aquilegia oxysepala HOM05D006937 ORTHO05D008747 2.1e-45 186.0 140 68.6
CDE11G0882 Ceratophyllum demersum HOM05D006937 ORTHO05D008747 1.4e-44 183.3 156 63.5
Ca_04880_v3 Cicer arietinum L. HOM05D006937 ORTHO05D008747 6.7e-44 181.0 110 80.0
FAN12G3635 Fragaria x ananassa HOM05D006937 ORTHO05D008747 5.7e-43 177.9 132 70.5
HPP92_013408 Vanilla planifolia HOM05D006937 ORTHO05D008747 1.1e-41 173.7 126 70.6
THA.LOC104808654 Tarenaya hassleriana HOM05D006937 ORTHO05D008747 1.8e-41 172.9 152 57.9
Aa31LG7G8430 Aethionema arabicum HOM05D006937 ORTHO05D008747 2.0e-40 169.5 152 57.2
AL1G39070 Arabidopsis lyrata HOM05D006937 ORTHO05D008747 2.0e-40 169.5 143 58.7
Carub.0001s2437 Capsella rubella HOM05D006937 ORTHO05D008747 4.5e-40 168.3 143 59.4
BraA07t29074Z Brassica rapa HOM05D001252 ORTHO05D005295 5.9e-40 167.9 143 59.4
AagrBONN_evm.TU.Sc2ySwM_228.447 Anthoceros agrestis HOM05D006937 ORTHO05D008747 1.0e-39 167.2 136 61.0
BcaC06g35132 Brassica carinata HOM05D006937 ORTHO05D008747 1.7e-39 166.4 143 58.7
A07p13030 Brassica napus HOM05D001252 ORTHO05D005295 1.7e-39 166.4 143 58.7
BcaB03g14081 Brassica carinata HOM05D006937 ORTHO05D008747 2.2e-39 166.0 145 57.2
Thhalv10008997m.g Eutrema salsugineum HOM05D006937 ORTHO05D008747 2.2e-39 166.0 143 58.7
SHI35111 Sapria himalayana HOM05D006937 ORTHO05D008747 3.8e-39 165.2 131 66.4
AT1G26660 Arabidopsis thaliana HOM05D006937 ORTHO05D008747 5.0e-39 164.9 143 58.0
Mapoly0006s0094 Marchantia polymorpha HOM05D006937 ORTHO05D008747 5.0e-39 164.9 137 59.1
Peaxi162Scf00222g00024 Petunia axillaris HOM05D006937 ORTHO05D008747 6.5e-39 164.5 116 72.4
Sp6g00050 Schrenkiella parvula HOM05D006937 ORTHO05D008747 8.5e-39 164.1 143 57.3
BcaB05g21932 Brassica carinata HOM05D006937 ORTHO05D008747 1.5e-38 163.3 145 55.9
C07p19480 Brassica napus HOM05D001252 ORTHO05D005295 4.2e-38 161.8 143 57.3
BolC7t42467H Brassica oleracea HOM05D001252 ORTHO05D001661 4.2e-38 161.8 143 57.3
arahy.Tifrunner.gnm1.ann1.J4SELD Arachis hypogaea HOM05D006937 ORTHO05D008747 4.7e-37 158.3 111 73.9
Pp3c21_19110 Physcomitrium patens HOM05D006937 ORTHO05D008747 1.0e-36 157.1 133 57.9
CBR_g48697 Chara braunii HOM05D006937 ORTHO05D008747 3.0e-36 155.6 139 54.0
Sabra08G0068400 Salix brachista HOM05D006937 ORTHO05D008747 6.7e-36 154.5 113 70.8
SalBow8G3842 Salvia bowleyana HOM05D006937 ORTHO05D008747 4.5e-32 141.7 141 53.2
CSS0016362 Camellia sinensis var. sinensis HOM05D006937 ORTHO05D008747 1.0e-31 140.6 149 59.1
Ah.02g130690 Amaranthus hybridus HOM05D006937 ORTHO05D008747 1.7e-31 139.8 143 53.8
PSO357G0488 Papaver somniferum HOM05D006937 ORTHO05D008747 1.2e-27 127.1 81 75.3
ClCG09G001850 Citrullus lanatus HOM05D006937 ORTHO05D008747 5.7e-27 124.8 77 77.9
arahy.Tifrunner.gnm1.ann1.K4YSPN Arachis hypogaea HOM05D006937 ORTHO05D008747 7.7e-24 114.4 65 81.5
A09p40080 Brassica napus HOM05D004525 ORTHO05D005295 9.2e-17 90.9 75 60.0
Potri.010G163600 Populus trichocarpa HOM05D006937 ORTHO05D008747 2.9e-15 85.9 155 41.3
BcaC05g26400 Brassica carinata HOM05D004525 ORTHO05D005295 3.8e-15 85.5 61 63.9
Sabra10G0124400 Salix brachista HOM05D006937 ORTHO05D008747 3.8e-15 85.5 153 38.6
Cpa.g.sc1.69 Carica papaya HOM05D006937 ORTHO05D008747 1.4e-09 67.0 45 77.8
Cc00_g19610 Coffea canephora HOM05D000421 ORTHO05D013979 3.0e-07 59.3 34 85.3
Cc08_g04320 Coffea canephora HOM05D006937 ORTHO05D013979 3.0e-07 59.3 34 85.3
PRCOL_00006274 Prasinoderma coloniale HOM05D006937 ORTHO05D008747 1.9e-06 56.6 138 30.4


User provided reference genes

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