Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10032982m.g Citrus clementina HOM05D007333 ORTHO05D008874 3.8e-79 298.1 153 100.0
Ciclev10010649m.g Citrus clementina HOM05D007333 ORTHO05D008874 1.2e-48 196.8 105 96.2
Ciclev10029520m.g Citrus clementina HOM05D007333 ORTHO05D008874 2.7e-48 195.7 106 94.3
Atru.chr12.950 Acer truncatum HOM05D007333 ORTHO05D008874 5.7e-35 151.4 142 53.5
Ciclev10009691m.g Citrus clementina HOM05D007333 ORTHO05D037868 4.0e-28 128.6 69 94.2
CiPaw.14G027900 Carya illinoinensis HOM05D007333 ORTHO05D008874 3.2e-25 119.0 142 48.6
Manes.07G092300 Manihot esculenta HOM05D007333 ORTHO05D008874 5.4e-25 118.2 134 47.8
Potri.010G233400 Populus trichocarpa HOM05D007333 ORTHO05D008874 2.0e-24 116.3 149 43.6
Cpa.g.sc128.62 Carica papaya HOM05D007333 ORTHO05D008874 2.7e-24 115.9 155 47.7
Manes.10G054600 Manihot esculenta HOM05D007333 ORTHO05D008874 6.0e-24 114.8 151 41.1
Prupe.2G091100 Prunus persica HOM05D007333 ORTHO05D008874 1.3e-23 113.6 141 46.1
Duzib114G0443 Durio zibethinus HOM05D007333 ORTHO05D008874 1.7e-23 113.2 150 45.3
Thecc.10G097500 Theobroma cacao HOM05D007333 ORTHO05D008874 3.9e-23 112.1 149 44.3
TWI63G0473 Tripterygium wilfordii HOM05D007333 ORTHO05D008874 5.0e-23 111.7 159 41.5
RcHm_v2.0_Chr1g0334731 Rosa chinensis HOM05D007333 ORTHO05D008874 1.1e-22 110.5 148 45.3
COL.COLO4_34172 Corchorus olitorius HOM05D007333 ORTHO05D008874 1.5e-22 110.2 137 47.4
Duzib128G0626 Durio zibethinus HOM05D007333 ORTHO05D008874 1.5e-22 110.2 149 46.3
Dinv31280 Davidia involucrata HOM05D007333 ORTHO05D008874 1.2e-21 107.1 147 42.2
FAN10G2394 Fragaria x ananassa HOM05D007333 ORTHO05D008874 3.6e-21 105.5 146 44.5
PGR044G2090 Punica granatum HOM05D007333 ORTHO05D008874 4.7e-21 105.1 150 42.0
TWI38G1382 Tripterygium wilfordii HOM05D007333 ORTHO05D008874 1.1e-20 104.0 160 40.0
FAN01G0324 Fragaria x ananassa HOM05D007333 ORTHO05D008874 1.8e-20 103.2 146 43.8
FAN03G1611 Fragaria x ananassa HOM05D007333 ORTHO05D008874 1.8e-20 103.2 146 43.2
Lj5g0012880 Lotus japonicus HOM05D007333 ORTHO05D008874 5.2e-20 101.7 162 41.4
Sabra10G0181000 Salix brachista HOM05D007333 ORTHO05D008874 6.8e-20 101.3 168 38.1
FAN06G2923 Fragaria x ananassa HOM05D007333 ORTHO05D008874 1.5e-19 100.1 146 42.5
Gohir.D05G290801 Gossypium hirsutum HOM05D007333 ORTHO05D008874 2.0e-19 99.8 149 40.3
Aa31LG10G7320 Aethionema arabicum HOM05D007333 ORTHO05D008874 2.6e-19 99.4 129 45.7
Gorai.009G305900 Gossypium raimondii HOM05D007333 ORTHO05D008874 2.6e-19 99.4 149 40.3
THA.LOC104823559 Tarenaya hassleriana HOM05D007333 ORTHO05D008874 4.4e-19 98.6 127 44.9
Eucgr.J01027 Eucalyptus grandis HOM05D007333 ORTHO05D008874 2.9e-18 95.9 81 58.0
Gohir.A05G289401 Gossypium hirsutum HOM05D007333 ORTHO05D008874 1.4e-17 93.6 149 38.9
CANSAT56G1926 Cannabis sativa HOM05D007333 ORTHO05D008874 9.2e-17 90.9 144 42.4
Lalb_Chr21g0313181 Lupinus albus HOM05D007333 ORTHO05D008874 1.3e-15 87.0 154 40.3
Sp5g10030 Schrenkiella parvula HOM05D007333 ORTHO05D008874 1.3e-15 87.0 125 47.2
arahy.Tifrunner.gnm1.ann1.YB4FNL Arachis hypogaea HOM05D007333 ORTHO05D008874 3.0e-15 85.9 128 39.1
AT3G52230 Arabidopsis thaliana HOM05D007333 ORTHO05D008874 5.1e-15 85.1 138 40.6
C08p27470 Brassica napus HOM05D007333 ORTHO05D008874 8.6e-15 84.3 130 42.3
arahy.Tifrunner.gnm1.ann1.N9I1MN Arachis hypogaea HOM05D007333 ORTHO05D008874 1.1e-14 84.0 128 38.3
BcaC07g39593 Brassica carinata HOM05D007333 ORTHO05D008874 1.1e-14 84.0 126 42.9
AL5G32820 Arabidopsis lyrata HOM05D007333 ORTHO05D008874 1.9e-14 83.2 130 43.1
BolC8t50364H Brassica oleracea HOM05D007333 ORTHO05D008874 1.9e-14 83.2 130 42.3
Sc20g0001370 Simmondsia chinensis HOM05D007333 ORTHO05D008874 1.9e-14 83.2 139 38.1
GSVIVG01034686001 Vitis vinifera HOM05D007333 ORTHO05D008874 2.5e-14 82.8 130 38.5
ClCG08G008020 Citrullus lanatus HOM05D007333 ORTHO05D008874 3.3e-14 82.4 124 40.3
CARHR162000 Cardamine hirsuta HOM05D007333 ORTHO05D008874 9.5e-14 80.9 115 44.3
Cc02_g10320 Coffea canephora HOM05D007333 ORTHO05D008874 9.5e-14 80.9 143 40.6
Dinv20855 Davidia involucrata HOM05D007333 ORTHO05D008874 9.5e-14 80.9 145 40.7
Aqoxy2G01500 Aquilegia oxysepala HOM05D007333 ORTHO05D008874 1.2e-13 80.5 150 38.0
Carub.0005s1859 Capsella rubella HOM05D007333 ORTHO05D008874 1.6e-13 80.1 126 42.9
CsaV3_2G032900 Cucumis sativus L. HOM05D007333 ORTHO05D008874 2.1e-13 79.7 106 46.2
Sed0000251 Sechium edule HOM05D007333 ORTHO05D008874 2.1e-13 79.7 108 44.4
MELO3C019874.2 Cucumis melo HOM05D007333 ORTHO05D008874 2.8e-13 79.3 106 44.3
Hma1.2p1_0567F.1_g180010 Hydrangea macrophylla HOM05D007333 ORTHO05D008874 2.8e-13 79.3 111 43.2
Lsat_1_v5_gn_8_23060 Lactuca sativa HOM05D007333 ORTHO05D008874 1.4e-12 77.0 133 44.4
unitig_746.g26629 Utricularia gibba HOM05D007333 ORTHO05D008874 6.8e-12 74.7 124 41.9
vmacro10268 Vaccinium macrocarpon HOM05D007333 ORTHO05D008874 1.2e-11 73.9 145 39.3
HanXRQChr08g0218141 Helianthus annuus HOM05D007333 ORTHO05D008874 1.5e-11 73.6 98 46.9
QL04p040607 Quercus lobata HOM05D007333 ORTHO05D008874 1.5e-11 73.6 107 39.3
SEGI_06473 Sequoiadendron giganteum HOM05D007333 ORTHO05D008874 2.6e-11 72.8 72 47.2
Ah.06g184540 Amaranthus hybridus HOM05D007333 ORTHO05D008874 4.4e-11 72.0 121 34.7
Lalb_Chr06g0170141 Lupinus albus HOM05D007333 ORTHO05D008874 4.4e-11 72.0 123 41.5
Phvul.007G105600 Phaseolus vulgaris HOM05D007333 ORTHO05D008874 5.8e-11 71.6 148 31.8
Glyma.10G201500 Glycine max HOM05D007333 ORTHO05D008874 7.6e-11 71.2 140 32.9
A04p07130 Brassica napus HOM05D007333 ORTHO05D008874 9.9e-11 70.9 48 64.6
Glyma.20G188900 Glycine max HOM05D007333 ORTHO05D008874 9.9e-11 70.9 147 29.9
Medtr1g492630 Medicago truncatula HOM05D007333 ORTHO05D008874 1.3e-10 70.5 127 31.5
Nitab4.5_0000593g0040 Nicotiana tabacum HOM05D007333 ORTHO05D008874 1.3e-10 70.5 132 38.6
Actinidia38900 Actinidia chinensis HOM05D007333 ORTHO05D008874 1.7e-10 70.1 134 41.8
Ca_10485_v3 Cicer arietinum L. HOM05D007333 ORTHO05D008874 1.7e-10 70.1 140 35.7
Nitab4.5_0003408g0030 Nicotiana tabacum HOM05D007333 ORTHO05D008874 2.2e-10 69.7 130 39.2
A09p45290 Brassica napus HOM05D007333 ORTHO05D008874 2.9e-10 69.3 147 37.4
Medtr1g492600 Medicago truncatula HOM05D007333 ORTHO05D008874 2.9e-10 69.3 130 30.8
Actinidia34782 Actinidia chinensis HOM05D007333 ORTHO05D008874 4.9e-10 68.6 143 40.6
BraA09t39992Z Brassica rapa HOM05D007333 ORTHO05D008874 4.9e-10 68.6 131 38.9
TPR.G2540 Trifolium pratense HOM05D007333 ORTHO05D008874 4.9e-10 68.6 135 32.6
MSTRG.408 Avicennia marina HOM05D007333 ORTHO05D008874 6.4e-10 68.2 119 40.3
Oeu015044.1 Olea europaea HOM05D007333 ORTHO05D008874 6.4e-10 68.2 146 37.7
SalBow6G6510 Salvia bowleyana HOM05D007333 ORTHO05D008874 6.4e-10 68.2 124 41.1
SGA_v2.0_scaffold62G21322 Striga asiatica HOM05D007333 ORTHO05D008874 6.4e-10 68.2 144 36.1
Cfa011213 Carpinus fangiana HOM05D018442 ORTHO05D020347 8.4e-10 67.8 107 42.1
Migut.F01662 Erythranthe guttata HOM05D007333 ORTHO05D008874 1.1e-09 67.4 79 50.6
VMungo0720G1448 Vigna mungo HOM05D007333 ORTHO05D008874 1.4e-09 67.0 147 34.0
Oeu030485.1 Olea europaea HOM05D007333 ORTHO05D008874 2.4e-09 66.2 146 35.6
TAR633G0429 Trochodendron aralioides HOM05D007333 ORTHO05D008874 3.2e-09 65.9 147 32.0
Haze_02631 Corylus avellana HOM05D007333 ORTHO05D008874 9.2e-09 64.3 138 37.7
MBI17_g20230_MAGBIO Magnolia biondii HOM05D007333 ORTHO05D008874 1.2e-08 63.9 85 43.5
HanXRQChr14g0456271 Helianthus annuus HOM05D007333 ORTHO05D008874 2.1e-08 63.2 103 38.8
Peaxi162Scf00398g00057 Petunia axillaris HOM05D007333 ORTHO05D008874 2.1e-08 63.2 143 30.8
Solyc11g007680.2 Solanum lycopersicum HOM05D007333 ORTHO05D008874 2.1e-08 63.2 112 35.7
Sopen11g003540 Solanum pennellii HOM05D007333 ORTHO05D008874 2.1e-08 63.2 112 35.7
DCAR_019045 Daucus carota HOM05D007333 ORTHO05D008874 2.7e-08 62.8 126 35.7
Thhalv10010807m.g Eutrema salsugineum HOM05D007333 ORTHO05D008874 3.5e-08 62.4 102 38.2
PGSC0003DMG402027350 Solanum tuberosum HOM05D007333 ORTHO05D008874 6.0e-08 61.6 135 33.3
ECA238G3189 Erigeron canadensis HOM05D007333 ORTHO05D008874 1.0e-07 60.8 99 36.4
Psat6g175280 Pisum sativum HOM05D007333 ORTHO05D008874 1.3e-07 60.5 89 34.8
Nn2g13958 Nelumbo nucifera HOM05D007333 ORTHO05D008874 3.9e-07 58.9 54 51.9
ECA233G0976 Erigeron canadensis HOM05D007333 ORTHO05D008874 5.1e-07 58.5 87 39.1
FvH4_7g06450 Fragaria vesca HOM05D007333 ORTHO05D008874 2.5e-06 56.2 110 35.5
QL08p037183 Quercus lobata HOM05D018442 ORTHO05D020347 3.3e-06 55.8 99 36.4
COL.COLO4_34173 Corchorus olitorius HOM05D018442 ORTHO05D020347 4.3e-06 55.5 110 38.2
Lsat_1_v5_gn_2_102881 Lactuca sativa HOM05D007333 ORTHO05D008874 4.3e-06 55.5 117 38.5
Thecc.10G097400 Theobroma cacao HOM05D018442 ORTHO05D020347 5.6e-06 55.1 113 39.8
CSS0002382 Camellia sinensis var. sinensis HOM05D007333 ORTHO05D008874 9.6e-06 54.3 126 33.3
HPP92_009761 Vanilla planifolia HOM05D065211 ORTHO05D008874 9.6e-06 54.3 81 43.2


User provided reference genes

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