Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10032959m.g Citrus clementina HOM05D005335 ORTHO05D006472 2.3e-63 245.7 160 100.0
Haze_07140 Corylus avellana HOM05D005335 ORTHO05D006472 1.6e-35 153.3 173 72.8
Cfa018794 Carpinus fangiana HOM05D005335 ORTHO05D006472 8.7e-34 147.5 176 71.6
Thecc.03G129400 Theobroma cacao HOM05D005335 ORTHO05D006472 7.3e-33 144.4 175 68.6
Duzib205G0334 Durio zibethinus HOM05D005335 ORTHO05D006472 6.2e-32 141.4 177 64.4
Atru.chr6.1795 Acer truncatum HOM05D005335 ORTHO05D006472 2.4e-31 139.4 173 68.2
COL.COLO4_28131 Corchorus olitorius HOM05D005335 ORTHO05D006472 2.4e-31 139.4 178 68.5
Duzib084G1383 Durio zibethinus HOM05D005335 ORTHO05D006472 3.1e-31 139.0 176 52.3
Potri.012G097901 Populus trichocarpa HOM05D005335 ORTHO05D006472 9.9e-30 134.0 181 63.0
TAR371G0199 Trochodendron aralioides HOM05D005335 ORTHO05D006472 1.7e-29 133.3 166 60.2
PGR044G0086 Punica granatum HOM05D005335 ORTHO05D006472 3.8e-29 132.1 171 60.8
CiPaw.11G007000 Carya illinoinensis HOM05D005335 ORTHO05D006472 1.4e-28 130.2 178 68.0
TWI39G0987 Tripterygium wilfordii HOM05D005335 ORTHO05D006472 1.4e-28 130.2 174 67.8
Manes.06G119800 Manihot esculenta HOM05D005335 ORTHO05D006472 5.4e-28 128.3 180 65.6
Hma1.2p1_0014F.1_g009400 Hydrangea macrophylla HOM05D005335 ORTHO05D006472 1.2e-27 127.1 176 61.4
QL10p002879 Quercus lobata HOM05D005335 ORTHO05D006472 2.7e-27 125.9 185 57.8
TAR629G1091 Trochodendron aralioides HOM05D005335 ORTHO05D006472 2.7e-27 125.9 172 66.3
ClCG06G017900 Citrullus lanatus HOM05D005335 ORTHO05D006472 4.6e-27 125.2 169 65.1
Sabra15G0117300 Salix brachista HOM05D005335 ORTHO05D006472 6.0e-27 124.8 177 61.0
Potri.015G096500 Populus trichocarpa HOM05D005335 ORTHO05D006472 7.9e-27 124.4 178 62.4
MELO3C026206.2 Cucumis melo HOM05D005335 ORTHO05D006472 1.0e-26 124.0 175 64.6
Nn3g16458 Nelumbo nucifera HOM05D005335 ORTHO05D006472 1.9e-25 119.8 175 46.3
Sabra12G0071600 Salix brachista HOM05D005335 ORTHO05D006472 3.3e-25 119.0 148 65.5
Cpa.g.sc13.114 Carica papaya HOM05D005335 ORTHO05D006472 4.3e-25 118.6 178 63.5
Gohir.D07G055600 Gossypium hirsutum HOM05D005335 ORTHO05D006472 4.3e-25 118.6 173 64.7
Gorai.001G058900 Gossypium raimondii HOM05D005335 ORTHO05D006472 4.3e-25 118.6 173 64.7
Rhsim08G0190300 Rhododendron simsii HOM05D005335 ORTHO05D006472 7.4e-25 117.9 174 56.3
Gohir.A07G051200 Gossypium hirsutum HOM05D005335 ORTHO05D006472 1.3e-24 117.1 173 64.2
Gorai.009G431200 Gossypium raimondii HOM05D005335 ORTHO05D006472 1.3e-24 117.1 162 47.5
Sed0021893 Sechium edule HOM05D005335 ORTHO05D006472 1.6e-24 116.7 162 58.6
CAN.G1305.23 Capsicum annuum HOM05D005335 ORTHO05D006472 2.1e-24 116.3 172 63.4
Gohir.D05G361600 Gossypium hirsutum HOM05D005335 ORTHO05D006472 2.1e-24 116.3 162 47.5
PGSC0003DMG400018091 Solanum tuberosum HOM05D005335 ORTHO05D006472 2.1e-24 116.3 168 61.9
Nitab4.5_0000514g0170 Nicotiana tabacum HOM05D005335 ORTHO05D006472 1.8e-23 113.2 168 63.1
Nitab4.5_0002403g0010 Nicotiana tabacum HOM05D005335 ORTHO05D006472 1.8e-23 113.2 181 60.8
FAN04G0838 Fragaria x ananassa HOM05D005335 ORTHO05D006472 2.4e-23 112.8 178 62.9
Gohir.D09G247500 Gossypium hirsutum HOM05D005335 ORTHO05D006472 2.4e-23 112.8 171 47.4
RcHm_v2.0_Chr7g0190101 Rosa chinensis HOM05D005335 ORTHO05D006472 2.4e-23 112.8 178 62.4
Sopen03g032000 Solanum pennellii HOM05D005335 ORTHO05D006472 2.4e-23 112.8 175 61.1
CiPaw.12G043300 Carya illinoinensis HOM05D005335 ORTHO05D006472 3.1e-23 112.5 163 60.1
CsaV3_1G000550 Cucumis sativus L. HOM05D005335 ORTHO05D006472 5.3e-23 111.7 175 62.3
Gorai.006G272000 Gossypium raimondii HOM05D005335 ORTHO05D006472 5.3e-23 111.7 171 46.8
Nn4g22311 Nelumbo nucifera HOM05D005335 ORTHO05D006472 5.3e-23 111.7 171 64.9
Sed0012251 Sechium edule HOM05D005335 ORTHO05D006472 5.3e-23 111.7 162 62.3
A01p25690 Brassica napus HOM05D005335 ORTHO05D006472 6.9e-23 111.3 167 44.3
BraA01t02445Z Brassica rapa HOM05D005335 ORTHO05D006472 6.9e-23 111.3 167 44.3
Gohir.A09G247000 Gossypium hirsutum HOM05D005335 ORTHO05D006472 6.9e-23 111.3 171 51.5
vmacro19206 Vaccinium macrocarpon HOM05D005335 ORTHO05D006472 6.9e-23 111.3 175 52.6
Actinidia36728 Actinidia chinensis HOM05D005335 ORTHO05D006472 9.0e-23 110.9 140 50.0
BolC1t03128H Brassica oleracea HOM05D005335 ORTHO05D006472 9.0e-23 110.9 167 43.7
Solyc03g112920.1 Solanum lycopersicum HOM05D005335 ORTHO05D006472 9.0e-23 110.9 175 60.6
MSTRG.11283 Avicennia marina HOM05D005335 ORTHO05D006472 1.2e-22 110.5 173 53.8
Cc04_g09930 Coffea canephora HOM05D005335 ORTHO05D006472 1.2e-22 110.5 169 56.2
VMungo1215G0398 Vigna mungo HOM05D005335 ORTHO05D006472 1.2e-22 110.5 165 66.1
Dinv11173 Davidia involucrata HOM05D001420 ORTHO05D002488 1.5e-22 110.2 167 54.5
Lsat_1_v5_gn_4_80981 Lactuca sativa HOM05D005335 ORTHO05D006472 1.5e-22 110.2 184 57.6
Glyma.17G130400 Glycine max HOM05D005335 ORTHO05D006472 2.0e-22 109.8 169 63.9
Prupe.5G150800 Prunus persica HOM05D005335 ORTHO05D006472 2.0e-22 109.8 167 62.9
FAN08G1274 Fragaria x ananassa HOM05D005335 ORTHO05D006472 2.6e-22 109.4 178 62.4
CSS0021703 Camellia sinensis var. sinensis HOM05D005335 ORTHO05D006472 3.4e-22 109.0 164 46.3
HanXRQChr09g0273241 Helianthus annuus HOM05D005335 ORTHO05D006472 3.4e-22 109.0 172 58.7
Lalb_Chr07g0183461 Lupinus albus HOM05D005335 ORTHO05D006472 4.5e-22 108.6 159 62.9
Gohir.D08G258700 Gossypium hirsutum HOM05D005335 ORTHO05D006472 7.6e-22 107.8 171 45.0
DCAR_016388 Daucus carota HOM05D005335 ORTHO05D006472 9.9e-22 107.5 173 56.6
FAN13G0785 Fragaria x ananassa HOM05D005335 ORTHO05D006472 9.9e-22 107.5 177 54.8
MD06G1141500 Malus domestica HOM05D005335 ORTHO05D006472 9.9e-22 107.5 171 62.0
Manes.14G051200 Manihot esculenta HOM05D005335 ORTHO05D006472 1.7e-21 106.7 160 63.8
BcaC09g49876 Brassica carinata HOM05D005335 ORTHO05D006472 2.2e-21 106.3 167 61.1
CSS0038536 Camellia sinensis var. sinensis HOM05D005335 ORTHO05D006472 2.2e-21 106.3 175 46.3
Oeu023482.1 Olea europaea HOM05D005335 ORTHO05D006472 2.9e-21 105.9 175 56.6
Gohir.A04G026600 Gossypium hirsutum HOM05D005335 ORTHO05D006472 3.8e-21 105.5 125 55.2
HanXRQChr16g0498141 Helianthus annuus HOM05D005335 ORTHO05D006472 3.8e-21 105.5 176 57.4
MBI11_g05328_MAGBIO Magnolia biondii HOM05D001420 ORTHO05D002488 3.8e-21 105.5 154 62.3
FvH4_5g08350 Fragaria vesca HOM05D005335 ORTHO05D006472 8.4e-21 104.4 173 61.8
FAN18G1337 Fragaria x ananassa HOM05D005335 ORTHO05D006472 8.4e-21 104.4 173 61.8
PSO478G2775 Papaver somniferum HOM05D005335 ORTHO05D006472 1.1e-20 104.0 180 57.8
BcaB05g23008 Brassica carinata HOM05D005335 ORTHO05D006472 1.9e-20 103.2 167 43.1
Lalb_Chr13g0297231 Lupinus albus HOM05D005335 ORTHO05D006472 3.2e-20 102.4 161 52.2
PSO017G0745 Papaver somniferum HOM05D005335 ORTHO05D006472 3.2e-20 102.4 180 51.7
Peaxi162Scf00009g00007 Petunia axillaris HOM05D005335 ORTHO05D006472 3.2e-20 102.4 142 63.4
TPR.G19227 Trifolium pratense HOM05D005335 ORTHO05D006472 3.2e-20 102.4 162 63.0
Ca_26102_v3 Cicer arietinum L. HOM05D005335 ORTHO05D006472 9.3e-20 100.9 159 64.2
Lj4g0005056 Lotus japonicus HOM05D005335 ORTHO05D006472 1.6e-19 100.1 157 46.5
PSO478G4723 Papaver somniferum HOM05D005335 ORTHO05D006472 1.6e-19 100.1 204 50.0
Rhsim12G0175000 Rhododendron simsii HOM05D005335 ORTHO05D006472 1.6e-19 100.1 162 50.0
Medtr4g103250 Medicago truncatula HOM05D005335 ORTHO05D006472 2.1e-19 99.8 160 64.4
THA.LOC104821517 Tarenaya hassleriana HOM05D005335 ORTHO05D006472 2.1e-19 99.8 164 62.8
Gorai.004G276200 Gossypium raimondii HOM05D005335 ORTHO05D006472 2.7e-19 99.4 170 43.5
Psat4g066680 Pisum sativum HOM05D005335 ORTHO05D006472 2.7e-19 99.4 160 63.8
GSVIVG01008545001 Vitis vinifera HOM05D005335 ORTHO05D006472 2.7e-19 99.4 92 90.2
A06p19120 Brassica napus HOM05D005335 ORTHO05D006472 3.5e-19 99.0 170 41.8
BraA06t24996Z Brassica rapa HOM05D005335 ORTHO05D006472 3.5e-19 99.0 170 41.8
Glyma.05G048500 Glycine max HOM05D005335 ORTHO05D006472 6.0e-19 98.2 168 62.5
PSO017G4217 Papaver somniferum HOM05D005335 ORTHO05D006472 7.9e-19 97.8 203 49.3
Thhalv10010777m.g Eutrema salsugineum HOM05D005335 ORTHO05D006472 1.0e-18 97.4 160 40.6
Oeu045458.1 Olea europaea HOM05D005335 ORTHO05D006472 1.0e-18 97.4 172 55.2
Oeu045459.1 Olea europaea HOM05D005335 ORTHO05D006472 1.0e-18 97.4 172 55.2
MD14G1156700 Malus domestica HOM05D005335 ORTHO05D006472 1.3e-18 97.1 171 60.8
TWI23G0456 Tripterygium wilfordii HOM05D005335 ORTHO05D006472 1.8e-18 96.7 170 58.8
Aqoxy5G03368 Aquilegia oxysepala HOM05D005335 ORTHO05D006472 2.3e-18 96.3 174 52.9
BcaC07g39341 Brassica carinata HOM05D005335 ORTHO05D006472 2.3e-18 96.3 170 41.2
C08p23580 Brassica napus HOM05D005335 ORTHO05D006472 2.3e-18 96.3 170 41.2
BolC8t49988H Brassica oleracea HOM05D005335 ORTHO05D006472 2.3e-18 96.3 170 41.2
AT3G48550 Arabidopsis thaliana HOM05D005335 ORTHO05D006472 3.0e-18 95.9 171 39.8
Oeu005014.1 Olea europaea HOM05D005335 ORTHO05D006472 3.0e-18 95.9 168 52.4
AL5G28000 Arabidopsis lyrata HOM05D005335 ORTHO05D006472 5.1e-18 95.1 170 40.0
Actinidia25571 Actinidia chinensis HOM05D005335 ORTHO05D006472 1.1e-17 94.0 115 57.4
Dinv23148 Davidia involucrata HOM05D005335 ORTHO05D006472 4.3e-17 92.0 118 52.5
Migut.I00507 Erythranthe guttata HOM05D005335 ORTHO05D006472 4.3e-17 92.0 177 55.4
Sp5g13430 Schrenkiella parvula HOM05D005335 ORTHO05D006472 7.4e-17 91.3 123 46.3
Carub.0005s1474 Capsella rubella HOM05D005335 ORTHO05D006472 9.6e-17 90.9 176 39.2
BcaB01g00799 Brassica carinata HOM05D005335 ORTHO05D006472 1.6e-16 90.1 167 41.3
Aqoxy3G00598 Aquilegia oxysepala HOM05D005335 ORTHO05D006472 1.4e-15 87.0 162 52.5
C01p32260 Brassica napus HOM05D005335 ORTHO05D006472 2.4e-15 86.3 167 56.9
Sc04g0000630 Simmondsia chinensis HOM05D005335 ORTHO05D006472 2.4e-15 86.3 151 40.4
EL10Ac5g11411 Beta vulgaris HOM05D005335 ORTHO05D006472 4.0e-15 85.5 125 46.4
CANSAT80G0357 Cannabis sativa HOM05D005335 ORTHO05D006472 4.0e-15 85.5 248 40.7
Migut.D01260 Erythranthe guttata HOM05D005335 ORTHO05D006472 1.2e-14 84.0 179 50.3
Actinidia08873 Actinidia chinensis HOM05D001420 ORTHO05D002488 1.5e-14 83.6 163 41.1
Oeu030248.1 Olea europaea HOM05D005335 ORTHO05D006472 1.5e-14 83.6 167 54.5
Aa31LG4G17170 Aethionema arabicum HOM05D005335 ORTHO05D006472 2.0e-14 83.2 87 50.6
THA.LOC104818185 Tarenaya hassleriana HOM05D005335 ORTHO05D006472 2.6e-14 82.8 163 53.4
Ah.11g045430 Amaranthus hybridus HOM05D005335 ORTHO05D006472 3.8e-13 79.0 125 42.4
CARHR157350 Cardamine hirsuta HOM05D005335 ORTHO05D006472 3.8e-13 79.0 113 49.6
AUR62034828 Chenopodium quinoa HOM05D005335 ORTHO05D006472 1.1e-12 77.4 123 43.9
DCAR_007490 Daucus carota HOM05D005335 ORTHO05D006472 1.1e-12 77.4 171 36.8
Ah.04g153430 Amaranthus hybridus HOM05D005335 ORTHO05D006472 2.5e-12 76.3 125 42.4
AUR62029609 Chenopodium quinoa HOM05D005335 ORTHO05D006472 2.5e-12 76.3 122 44.3
unitig_744.g24466 Utricularia gibba HOM05D005335 ORTHO05D006472 4.2e-12 75.5 158 53.8
SGA_v2.0_scaffold161G37793 Striga asiatica HOM05D005335 ORTHO05D006472 2.1e-11 73.2 155 38.1
THA.LOC104798946 Tarenaya hassleriana HOM05D005335 ORTHO05D006472 3.0e-10 69.3 164 51.8
HPP92_009722 Vanilla planifolia HOM05D005335 ORTHO05D006472 1.1e-09 67.4 161 32.9
HanXRQChr05g0155191 Helianthus annuus HOM05D005335 ORTHO05D006472 9.7e-09 64.3 172 51.2
CDE11G1049 Ceratophyllum demersum HOM05D000179 ORTHO05D000107 1.3e-08 63.9 159 43.4
SGA_v2.0_scaffold5G02870 Striga asiatica HOM05D005335 ORTHO05D006472 2.2e-08 63.2 165 50.3
CDE05G0391 Ceratophyllum demersum HOM05D000179 ORTHO05D000107 1.8e-07 60.1 157 41.4
Lj9P479T20 Lonicera japonica HOM05D005335 ORTHO05D006472 2.0e-06 56.6 69 87.0
SEGI_18714 Sequoiadendron giganteum HOM05D005335 ORTHO05D006472 3.4e-06 55.8 79 74.7


User provided reference genes

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