Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10032958m.g Citrus clementina HOM05D007558 ORTHO05D009245 9.8e-86 320.1 160 100.0
Atru.chr11.2043 Acer truncatum HOM05D007558 ORTHO05D009245 4.9e-29 131.7 156 52.6
MD13G1093000 Malus domestica HOM05D007558 ORTHO05D009245 2.3e-26 122.9 144 55.6
Manes.12G027900 Manihot esculenta HOM05D007558 ORTHO05D009245 2.1e-24 116.3 147 50.3
Prupe.1G252500 Prunus persica HOM05D007558 ORTHO05D009245 2.8e-24 115.9 140 57.9
QL03p060106 Quercus lobata HOM05D007558 ORTHO05D009245 8.1e-24 114.4 134 53.0
Dinv15286 Davidia involucrata HOM05D000812 ORTHO05D000672 1.5e-22 110.2 147 46.3
MD16G1094000 Malus domestica HOM05D007558 ORTHO05D009245 4.5e-22 108.6 133 51.9
Duzib268G0018 Durio zibethinus HOM05D007558 ORTHO05D009245 7.6e-22 107.8 143 51.7
Thecc.02G251400 Theobroma cacao HOM05D007558 ORTHO05D009245 9.9e-22 107.5 145 51.0
Potri.010G041600 Populus trichocarpa HOM05D007558 ORTHO05D009245 4.2e-20 102.1 143 46.9
CiPaw.06G071200 Carya illinoinensis HOM05D007558 ORTHO05D009245 5.5e-20 101.7 135 47.4
Hma1.2p1_0536F.1_g173970 Hydrangea macrophylla HOM05D007558 ORTHO05D009245 1.6e-19 100.1 133 48.9
Phvul.002G070800 Phaseolus vulgaris HOM05D007558 ORTHO05D009245 1.6e-19 100.1 139 45.3
Duzib248G0521 Durio zibethinus HOM05D007558 ORTHO05D009245 2.1e-19 99.8 144 48.6
FvH4_4g34300 Fragaria vesca HOM05D007558 ORTHO05D009245 2.1e-19 99.8 122 50.0
VMungo1215G0509 Vigna mungo HOM05D007558 ORTHO05D009245 2.1e-19 99.8 139 44.6
Cfa009155 Carpinus fangiana HOM05D007558 ORTHO05D009245 4.6e-19 98.6 132 49.2
RcHm_v2.0_Chr4g0443731 Rosa chinensis HOM05D007558 ORTHO05D009245 6.0e-19 98.2 137 49.6
TWI18G1040 Tripterygium wilfordii HOM05D007558 ORTHO05D009245 6.0e-19 98.2 139 46.8
CSS0045389 Camellia sinensis var. sinensis HOM05D007558 ORTHO05D009245 7.9e-19 97.8 145 43.4
FAN12G2944 Fragaria x ananassa HOM05D007558 ORTHO05D009245 7.9e-19 97.8 135 51.1
FAN07G0793 Fragaria x ananassa HOM05D007558 ORTHO05D009245 3.0e-18 95.9 130 47.7
FAN22G1900 Fragaria x ananassa HOM05D007558 ORTHO05D009245 3.9e-18 95.5 130 47.7
PGR102G1011 Punica granatum HOM05D007558 ORTHO05D009245 5.1e-18 95.1 98 58.2
Cpa.g.sc69.52 Carica papaya HOM05D001601 ORTHO05D002628 6.7e-18 94.7 161 44.7
COL.COLO4_24179 Corchorus olitorius HOM05D007558 ORTHO05D009245 8.7e-18 94.4 90 62.2
Nn4g22760 Nelumbo nucifera HOM05D007558 ORTHO05D009245 8.7e-18 94.4 148 44.6
Glyma.08G286300 Glycine max HOM05D007558 ORTHO05D009245 1.1e-17 94.0 111 53.2
FAN17G0543 Fragaria x ananassa HOM05D007558 ORTHO05D009245 2.5e-17 92.8 117 48.7
Gohir.A12G143200 Gossypium hirsutum HOM05D007558 ORTHO05D009245 5.6e-17 91.7 139 47.5
Gohir.D12G147900 Gossypium hirsutum HOM05D007558 ORTHO05D009245 5.6e-17 91.7 139 47.5
Gorai.008G159200 Gossypium raimondii HOM05D007558 ORTHO05D009245 5.6e-17 91.7 139 47.5
Oeu056732.1 Olea europaea HOM05D007558 ORTHO05D009245 7.4e-17 91.3 134 44.8
Lalb_Chr05g0216831 Lupinus albus HOM05D007558 ORTHO05D009245 2.8e-16 89.4 125 46.4
Peaxi162Scf00710g00042 Petunia axillaris HOM05D020724 ORTHO05D009245 6.2e-16 88.2 160 39.4
CSS0017958 Camellia sinensis var. sinensis HOM05D007558 ORTHO05D009245 8.2e-16 87.8 127 44.1
Sc11g0001140 Simmondsia chinensis HOM05D007558 ORTHO05D009245 8.2e-16 87.8 184 35.9
Glyma.02G035400 Glycine max HOM05D007558 ORTHO05D009245 1.1e-15 87.4 142 43.0
Lalb_Chr16g0382221 Lupinus albus HOM05D007558 ORTHO05D009245 1.1e-15 87.4 129 44.2
CiPaw.05G151900 Carya illinoinensis HOM05D007558 ORTHO05D009245 1.4e-15 87.0 77 67.5
GSVIVG01013748001 Vitis vinifera HOM05D007558 ORTHO05D009245 1.8e-15 86.7 84 61.9
Glyma.01G030000 Glycine max HOM05D007558 ORTHO05D009245 2.4e-15 86.3 140 41.4
Gorai.012G171800 Gossypium raimondii HOM05D007558 ORTHO05D009245 2.4e-15 86.3 141 41.8
Gohir.D04G178700 Gossypium hirsutum HOM05D007558 ORTHO05D009245 3.1e-15 85.9 141 41.8
TPR.G11688 Trifolium pratense HOM05D007558 ORTHO05D009245 3.1e-15 85.9 147 40.8
Medtr5g034200 Medicago truncatula HOM05D007558 ORTHO05D009245 4.0e-15 85.5 117 44.4
Manes.13G029400 Manihot esculenta HOM05D007558 ORTHO05D009245 6.9e-15 84.7 165 38.2
Nn3g16851 Nelumbo nucifera HOM05D007558 ORTHO05D009245 6.9e-15 84.7 162 42.0
Lj2g0015975 Lotus japonicus HOM05D007558 ORTHO05D009245 1.2e-14 84.0 134 42.5
TPR.G11726 Trifolium pratense HOM05D007558 ORTHO05D009245 1.2e-14 84.0 144 42.4
Phvul.003G060900 Phaseolus vulgaris HOM05D007558 ORTHO05D009245 1.5e-14 83.6 105 53.3
Actinidia08162 Actinidia chinensis HOM05D007558 ORTHO05D009245 2.0e-14 83.2 105 50.5
CANSAT01G1746 Cannabis sativa HOM05D007558 ORTHO05D009245 2.6e-14 82.8 87 55.2
Lsat_1_v5_gn_8_155581 Lactuca sativa HOM05D007558 ORTHO05D009245 3.4e-14 82.4 133 41.4
Gohir.A04G135600 Gossypium hirsutum HOM05D007558 ORTHO05D009245 4.5e-14 82.0 145 40.0
Nitab4.5_0004636g0010 Nicotiana tabacum HOM05D007558 ORTHO05D009245 1.0e-13 80.9 97 47.4
CAN.G126.6 Capsicum annuum HOM05D007558 ORTHO05D009245 2.2e-13 79.7 98 48.0
Gohir.A03G139000 Gossypium hirsutum HOM05D007558 ORTHO05D009245 2.2e-13 79.7 132 47.0
PGSC0003DMG400027920 Solanum tuberosum HOM05D007558 ORTHO05D009245 2.2e-13 79.7 111 43.2
ClCG05G025370 Citrullus lanatus HOM05D007558 ORTHO05D009245 2.9e-13 79.3 146 43.8
Lj4g0018280 Lotus japonicus HOM05D007558 ORTHO05D009245 2.9e-13 79.3 152 42.1
Eucgr.B03316 Eucalyptus grandis HOM05D007558 ORTHO05D009245 4.9e-13 78.6 143 39.9
Aa31LG4G10480 Aethionema arabicum HOM05D008527 ORTHO05D010701 6.5e-13 78.2 141 42.6
DCAR_007085 Daucus carota HOM05D007558 ORTHO05D009245 6.5e-13 78.2 135 40.0
MSTRG.7902 Avicennia marina HOM05D007558 ORTHO05D009245 8.4e-13 77.8 107 50.5
Lalb_Chr09g0334981 Lupinus albus HOM05D007558 ORTHO05D009245 8.4e-13 77.8 145 40.7
Migut.E00166 Erythranthe guttata HOM05D007558 ORTHO05D009245 1.1e-12 77.4 126 43.7
THA.LOC104822151 Tarenaya hassleriana HOM05D008527 ORTHO05D010701 1.1e-12 77.4 111 49.5
SGA_v2.0_scaffold8G04208 Striga asiatica HOM05D007558 ORTHO05D009245 1.4e-12 77.0 119 45.4
Aqoxy3G02932 Aquilegia oxysepala HOM05D007558 ORTHO05D009245 1.9e-12 76.6 138 37.7
ECA233G1669 Erigeron canadensis HOM05D007558 ORTHO05D009245 2.5e-12 76.3 128 44.5
Gohir.D02G161900 Gossypium hirsutum HOM05D007558 ORTHO05D009245 2.5e-12 76.3 132 45.5
MSTRG.2398 Avicennia marina HOM05D007558 ORTHO05D009245 3.2e-12 75.9 137 40.1
Sed0009378 Sechium edule HOM05D007558 ORTHO05D009245 3.2e-12 75.9 142 46.5
Nitab4.5_0000034g0280 Nicotiana tabacum HOM05D007558 ORTHO05D009245 4.2e-12 75.5 83 48.2
Sopen04g014760 Solanum pennellii HOM05D007558 ORTHO05D009245 4.2e-12 75.5 79 49.4
VMungo0251G2708 Vigna mungo HOM05D007558 ORTHO05D009245 4.2e-12 75.5 107 50.5
TAR374G1667 Trochodendron aralioides HOM05D007558 ORTHO05D009245 7.1e-12 74.7 123 42.3
Carub.0002s1715 Capsella rubella HOM05D008527 ORTHO05D010701 9.3e-12 74.3 129 43.4
Oeu054057.1 Olea europaea HOM05D007558 ORTHO05D009245 9.3e-12 74.3 127 40.2
MELO3C011993.2 Cucumis melo HOM05D007558 ORTHO05D009245 2.1e-11 73.2 120 42.5
Solyc04g026250.1 Solanum lycopersicum HOM05D007558 ORTHO05D009245 2.7e-11 72.8 79 50.6
MBI16_g27096_MAGBIO Magnolia biondii HOM05D007558 ORTHO05D009245 3.5e-11 72.4 134 38.1
BolC2t08819H Brassica oleracea HOM05D008527 ORTHO05D010701 1.8e-10 70.1 122 41.8
BcaB07g32343 Brassica carinata HOM05D008527 ORTHO05D010701 3.0e-10 69.3 114 44.7
A02p16540 Brassica napus HOM05D008527 ORTHO05D010701 3.0e-10 69.3 122 41.8
BraA02t06712Z Brassica rapa HOM05D008527 ORTHO05D010701 3.0e-10 69.3 122 41.8
Psat4g124320 Pisum sativum HOM05D007558 ORTHO05D009245 6.7e-10 68.2 144 39.6
ECA234G1002 Erigeron canadensis HOM05D007558 ORTHO05D009245 8.7e-10 67.8 135 39.3
DCAR_026537 Daucus carota HOM05D007558 ORTHO05D009245 1.1e-09 67.4 134 41.8
unitig_26.g10360 Utricularia gibba HOM05D007558 ORTHO05D009245 1.5e-09 67.0 130 38.5
Ah.03g132750 Amaranthus hybridus HOM05D023191 ORTHO05D009245 1.9e-09 66.6 82 47.6
SalBow2G1747 Salvia bowleyana HOM05D007558 ORTHO05D009245 5.7e-09 65.1 73 49.3
Ah.02g129970 Amaranthus hybridus HOM05D023191 ORTHO05D009245 1.3e-08 63.9 79 45.6
Sed0023819 Sechium edule HOM05D007558 ORTHO05D009245 1.3e-08 63.9 110 43.6
AL1G37290 Arabidopsis lyrata HOM05D008527 ORTHO05D010701 2.2e-08 63.2 130 40.8
Nitab4.5_0005678g0020 Nicotiana tabacum HOM05D020724 ORTHO05D025910 2.2e-08 63.2 160 35.0
Lsat_1_v5_gn_4_5541 Lactuca sativa HOM05D007558 ORTHO05D009245 2.8e-08 62.8 117 38.5
Nitab4.5_0000203g0180 Nicotiana tabacum HOM05D020724 ORTHO05D025910 3.7e-08 62.4 162 35.8
unitig_8.g3152 Utricularia gibba HOM05D007558 ORTHO05D009245 1.8e-07 60.1 103 39.8
A07p36840 Brassica napus HOM05D008527 ORTHO05D010701 2.4e-07 59.7 127 39.4
A09p41140 Brassica napus HOM05D008527 ORTHO05D010701 2.4e-07 59.7 114 41.2
BraA09t39607Z Brassica rapa HOM05D008527 ORTHO05D010701 2.4e-07 59.7 114 41.2
Sp5g25540 Schrenkiella parvula HOM05D008527 ORTHO05D010701 2.4e-07 59.7 98 46.9
unitig_22.g6434 Utricularia gibba HOM05D007558 ORTHO05D009245 4.1e-07 58.9 133 31.6
EL10Ac6g13681 Beta vulgaris HOM05D023191 ORTHO05D009245 6.9e-07 58.2 172 29.7
AUR62014050 Chenopodium quinoa HOM05D023191 ORTHO05D009245 6.9e-07 58.2 74 44.6
BcaC05g26275 Brassica carinata HOM05D008527 ORTHO05D010701 9.0e-07 57.8 114 40.4
BcaC08g46489 Brassica carinata HOM05D008527 ORTHO05D010701 9.0e-07 57.8 86 46.5
C05p22860 Brassica napus HOM05D008527 ORTHO05D010701 9.0e-07 57.8 114 40.4
C06p44320 Brassica napus HOM05D008527 ORTHO05D010701 9.0e-07 57.8 86 46.5
BolC6t39502H Brassica oleracea HOM05D008527 ORTHO05D010701 9.0e-07 57.8 86 46.5
AL2G29840 Arabidopsis lyrata HOM05D008527 ORTHO05D010701 1.2e-06 57.4 125 37.6
BolC5t30985H Brassica oleracea HOM05D008527 ORTHO05D010701 1.2e-06 57.4 114 40.4
CsaV3_5G031540 Cucumis sativus L. HOM05D001601 ORTHO05D002628 1.5e-06 57.0 74 58.1
BcaC03g15190 Brassica carinata HOM05D008527 ORTHO05D010701 2.0e-06 56.6 128 35.2
C02p27710 Brassica napus HOM05D008527 ORTHO05D010701 2.0e-06 56.6 122 38.5
AUR62005388 Chenopodium quinoa HOM05D023191 ORTHO05D009245 2.0e-06 56.6 75 42.7
Thhalv10019272m.g Eutrema salsugineum HOM05D008527 ORTHO05D010701 3.4e-06 55.8 94 45.7
ATR0730G210 Amborella trichopoda HOM05D022024 ORTHO05D009245 7.7e-06 54.7 67 49.3
SalBow8G4409 Salvia bowleyana HOM05D007558 ORTHO05D009245 7.7e-06 54.7 125 36.8


User provided reference genes

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