Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10032947m.g Citrus clementina HOM05D005580 ORTHO05D006395 8.6e-90 333.6 162 100.0
Thecc.10G042400 Theobroma cacao HOM05D005580 ORTHO05D006395 3.1e-55 218.8 120 90.8
Potri.008G055800 Populus trichocarpa HOM05D005580 ORTHO05D006395 6.9e-55 217.6 120 88.3
Potri.010G203900 Populus trichocarpa HOM05D005580 ORTHO05D006395 6.9e-55 217.6 120 88.3
Atru.chr12.452 Acer truncatum HOM05D005580 ORTHO05D006395 4.5e-54 214.9 123 89.4
Atru.chr12.474 Acer truncatum HOM05D005580 ORTHO05D006395 4.5e-54 214.9 123 89.4
Duzib106G1822 Durio zibethinus HOM05D005580 ORTHO05D006395 7.6e-54 214.2 120 90.0
Sabra08G0040500 Salix brachista HOM05D005580 ORTHO05D006395 5.0e-53 211.5 120 86.7
Duzib128G0371 Durio zibethinus HOM05D005580 ORTHO05D006395 8.4e-53 210.7 120 87.5
COL.COLO4_15040 Corchorus olitorius HOM05D005580 ORTHO05D006395 2.5e-52 209.1 120 87.5
GSVIVG01016552001 Vitis vinifera HOM05D005580 ORTHO05D006395 2.5e-52 209.1 120 85.0
QL08p059794 Quercus lobata HOM05D005580 ORTHO05D006395 4.2e-52 208.4 122 82.0
Sabra10G0157500 Salix brachista HOM05D005580 ORTHO05D006395 5.5e-52 208.0 120 85.0
TWI38G1118 Tripterygium wilfordii HOM05D005580 ORTHO05D006395 7.2e-52 207.6 120 85.0
Cc02_g07860 Coffea canephora HOM05D005580 ORTHO05D006395 1.6e-51 206.5 119 87.4
Manes.10G030300 Manihot esculenta HOM05D005580 ORTHO05D006395 1.6e-51 206.5 120 85.0
RcHm_v2.0_Chr1g0367081 Rosa chinensis HOM05D005580 ORTHO05D006395 3.5e-51 205.3 120 84.2
CANSAT56G2481 Cannabis sativa HOM05D005580 ORTHO05D006395 4.6e-51 204.9 122 83.6
ClCG09G019730 Citrullus lanatus HOM05D005580 ORTHO05D006395 4.6e-51 204.9 120 80.8
FvH4_7g22470 Fragaria vesca HOM05D005580 ORTHO05D006395 4.6e-51 204.9 120 83.3
FAN01G0694 Fragaria x ananassa HOM05D005580 ORTHO05D006395 4.6e-51 204.9 120 83.3
FAN01G2215 Fragaria x ananassa HOM05D005580 ORTHO05D006395 4.6e-51 204.9 120 83.3
FAN03G1496 Fragaria x ananassa HOM05D005580 ORTHO05D006395 4.6e-51 204.9 120 83.3
FAN06G0736 Fragaria x ananassa HOM05D005580 ORTHO05D006395 4.6e-51 204.9 120 83.3
FAN06G1328 Fragaria x ananassa HOM05D005580 ORTHO05D006395 4.6e-51 204.9 120 83.3
FAN10G2347 Fragaria x ananassa HOM05D005580 ORTHO05D006395 4.6e-51 204.9 120 83.3
Gorai.013G022300 Gossypium raimondii HOM05D005580 ORTHO05D006395 6.1e-51 204.5 120 85.0
Gohir.D13G019900 Gossypium hirsutum HOM05D005580 ORTHO05D006395 7.9e-51 204.1 120 84.2
Nn2g11101 Nelumbo nucifera HOM05D005580 ORTHO05D006395 7.9e-51 204.1 120 83.3
CANSAT56G4483 Cannabis sativa HOM05D005580 ORTHO05D006395 1.0e-50 203.8 122 82.8
Cpa.g.sc1.404 Carica papaya HOM05D005580 ORTHO05D006395 1.0e-50 203.8 122 82.0
MELO3C021630.2 Cucumis melo HOM05D005580 ORTHO05D006395 1.0e-50 203.8 120 80.0
CsaV3_5G026670 Cucumis sativus L. HOM05D005580 ORTHO05D006395 1.0e-50 203.8 120 80.0
Sed0002022 Sechium edule HOM05D005580 ORTHO05D006395 1.0e-50 203.8 120 80.0
Sed0020308 Sechium edule HOM05D005580 ORTHO05D006395 1.0e-50 203.8 120 80.0
TAR623G0785 Trochodendron aralioides HOM05D005580 ORTHO05D006395 1.3e-50 203.4 120 83.3
DCAR_011695 Daucus carota HOM05D005580 ORTHO05D006395 1.8e-50 203.0 122 82.8
Gohir.A13G019300 Gossypium hirsutum HOM05D005580 ORTHO05D006395 1.8e-50 203.0 120 84.2
MD01G1134100 Malus domestica HOM05D005580 ORTHO05D006395 1.8e-50 203.0 123 81.3
CiPaw.02G183900 Carya illinoinensis HOM05D005580 ORTHO05D006395 2.3e-50 202.6 123 80.5
Manes.07G116200 Manihot esculenta HOM05D005580 ORTHO05D006395 2.3e-50 202.6 120 83.3
CiPaw.01G287400 Carya illinoinensis HOM05D005580 ORTHO05D006395 5.1e-50 201.4 120 84.2
MD07G1198300 Malus domestica HOM05D005580 ORTHO05D006395 5.1e-50 201.4 123 80.5
Actinidia02948 Actinidia chinensis HOM05D005580 ORTHO05D006395 6.7e-50 201.1 118 83.1
Cfa001474 Carpinus fangiana HOM05D005580 ORTHO05D006395 6.7e-50 201.1 120 81.7
Eucgr.G02934 Eucalyptus grandis HOM05D005580 ORTHO05D006395 1.1e-49 200.3 120 82.5
Prupe.2G235300 Prunus persica HOM05D005580 ORTHO05D006395 1.1e-49 200.3 123 79.7
TWI63G0967 Tripterygium wilfordii HOM05D005580 ORTHO05D006395 1.1e-49 200.3 120 84.2
HanXRQChr14g0457951 Helianthus annuus HOM05D005580 ORTHO05D006395 1.5e-49 199.9 123 79.7
Lsat_1_v5_gn_2_119121 Lactuca sativa HOM05D005580 ORTHO05D006395 1.5e-49 199.9 127 78.0
Oeu064380.1 Olea europaea HOM05D005580 ORTHO05D006395 1.5e-49 199.9 120 81.7
Gohir.A10G218800 Gossypium hirsutum HOM05D005580 ORTHO05D006395 1.9e-49 199.5 120 82.5
Gohir.D10G228400 Gossypium hirsutum HOM05D005580 ORTHO05D006395 1.9e-49 199.5 120 82.5
Gorai.011G260800 Gossypium raimondii HOM05D005580 ORTHO05D006395 1.9e-49 199.5 120 82.5
TAR633G1881 Trochodendron aralioides HOM05D005580 ORTHO05D006395 1.9e-49 199.5 120 81.7
DCAR_027619 Daucus carota HOM05D005580 ORTHO05D006395 2.5e-49 199.1 120 80.0
Lj1P937T48 Lonicera japonica HOM05D005580 ORTHO05D006395 2.5e-49 199.1 120 82.5
Rhsim03G0130700 Rhododendron simsii HOM05D005580 ORTHO05D006395 4.3e-49 198.4 123 78.9
CSS0041204 Camellia sinensis var. sinensis HOM05D005580 ORTHO05D006395 5.7e-49 198.0 120 80.0
Nn2g13341 Nelumbo nucifera HOM05D005580 ORTHO05D006395 5.7e-49 198.0 120 80.0
Lsat_1_v5_gn_8_15580 Lactuca sativa HOM05D005580 ORTHO05D006395 7.4e-49 197.6 120 81.7
vmacro07170 Vaccinium macrocarpon HOM05D005580 ORTHO05D006395 1.3e-48 196.8 115 80.9
VMungo1383G1027 Vigna mungo HOM05D005580 ORTHO05D006395 1.3e-48 196.8 122 80.3
Glyma.02G091600 Glycine max HOM05D005580 ORTHO05D006395 1.6e-48 196.4 122 79.5
Glyma.18G291400 Glycine max HOM05D005580 ORTHO05D006395 2.2e-48 196.1 124 78.2
PGSC0003DMG400023532 Solanum tuberosum HOM05D005580 ORTHO05D006395 2.8e-48 195.7 112 83.0
Nitab4.5_0001097g0030 Nicotiana tabacum HOM05D005580 ORTHO05D006395 4.8e-48 194.9 112 83.9
MSTRG.8252 Avicennia marina HOM05D005580 ORTHO05D006395 6.3e-48 194.5 120 79.2
Nitab4.5_0013062g0010 Nicotiana tabacum HOM05D005580 ORTHO05D006395 6.3e-48 194.5 112 83.9
Phvul.008G010700 Phaseolus vulgaris HOM05D005580 ORTHO05D006395 6.3e-48 194.5 112 83.0
Solyc05g054450.1 Solanum lycopersicum HOM05D005580 ORTHO05D006395 8.2e-48 194.1 112 82.1
Sopen05g032940 Solanum pennellii HOM05D005580 ORTHO05D006395 8.2e-48 194.1 112 82.1
Peaxi162Scf00886g00003 Petunia axillaris HOM05D005580 ORTHO05D006395 1.1e-47 193.7 114 82.5
Lj1g0024567 Lotus japonicus HOM05D005580 ORTHO05D006395 1.4e-47 193.4 120 77.5
ECA238G1104 Erigeron canadensis HOM05D005580 ORTHO05D006395 5.3e-47 191.4 125 75.2
HanXRQChr02g0037481 Helianthus annuus HOM05D005580 ORTHO05D006395 6.9e-47 191.0 120 75.8
Lalb_Chr17g0336141 Lupinus albus HOM05D005580 ORTHO05D006395 9.0e-47 190.7 121 78.5
SalBow6G2402 Salvia bowleyana HOM05D005580 ORTHO05D006395 2.0e-46 189.5 120 74.2
MBI05_g22035_MAGBIO Magnolia biondii HOM05D005580 ORTHO05D006395 1.3e-45 186.8 120 78.3
Sc10g0001550 Simmondsia chinensis HOM05D005580 ORTHO05D006395 1.3e-45 186.8 120 77.5
Medtr7g026320 Medicago truncatula HOM05D005580 ORTHO05D006395 2.2e-45 186.0 122 75.4
TPR.G23775 Trifolium pratense HOM05D005580 ORTHO05D006395 2.2e-45 186.0 123 75.6
Ca_26455_v3 Cicer arietinum L. HOM05D005580 ORTHO05D006395 2.9e-45 185.7 121 75.2
SEGI_33908 Sequoiadendron giganteum HOM05D005580 ORTHO05D006395 2.9e-45 185.7 115 77.4
THA.LOC104810028 Tarenaya hassleriana HOM05D005580 ORTHO05D006395 8.5e-45 184.1 124 72.6
Os05g0459300 Oryza sativa ssp. japonica HOM05D005580 ORTHO05D006395 2.5e-44 182.6 111 80.2
PSO339G4490 Papaver somniferum HOM05D005580 ORTHO05D006395 7.2e-44 181.0 120 71.7
PSO384G2205 Papaver somniferum HOM05D005580 ORTHO05D006395 7.2e-44 181.0 120 71.7
HPP92_019446 Vanilla planifolia HOM05D005580 ORTHO05D006395 9.4e-44 180.6 120 72.5
PSO339G6083 Papaver somniferum HOM05D005580 ORTHO05D006395 1.2e-43 180.3 112 80.4
THA.LOC104824274 Tarenaya hassleriana HOM05D005580 ORTHO05D006395 1.2e-43 180.3 112 75.9
ClCG07G003270 Citrullus lanatus HOM05D005580 ORTHO05D006395 4.6e-43 178.3 112 72.3
Lj8C84T10 Lonicera japonica HOM05D005580 ORTHO05D006395 4.6e-43 178.3 120 71.7
PSO151G0057 Papaver somniferum HOM05D005580 ORTHO05D006395 4.6e-43 178.3 112 79.5
SGA_v2.0_scaffold2G01004 Striga asiatica HOM05D005580 ORTHO05D006395 6.1e-43 177.9 119 70.6
Psat3g161760 Pisum sativum HOM05D005580 ORTHO05D006395 7.9e-43 177.6 112 74.1
unitig_8.g3317 Utricularia gibba HOM05D005580 ORTHO05D006395 1.4e-42 176.8 115 73.9
MELO3C023848.2 Cucumis melo HOM05D005580 ORTHO05D006395 1.8e-42 176.4 112 71.4
CsaV3_5G008020 Cucumis sativus L. HOM05D005580 ORTHO05D006395 2.3e-42 176.0 112 71.4
Lalb_Chr10g0091641 Lupinus albus HOM05D005580 ORTHO05D006395 5.1e-42 174.9 124 70.2
ATR0559G355 Amborella trichopoda HOM05D005580 ORTHO05D006395 6.7e-42 174.5 123 67.5
PGR142G3643 Punica granatum HOM05D005580 ORTHO05D006395 8.8e-42 174.1 117 73.5
Sp5g07050 Schrenkiella parvula HOM05D005580 ORTHO05D006395 8.8e-42 174.1 125 70.4
Ah.16g102300 Amaranthus hybridus HOM05D005580 ORTHO05D006395 1.1e-41 173.7 127 68.5
Thhalv10010708m.g Eutrema salsugineum HOM05D005580 ORTHO05D006395 2.0e-41 172.9 125 69.6
AL5G36570 Arabidopsis lyrata HOM05D005580 ORTHO05D006395 4.3e-41 171.8 125 69.6
Sed0012553 Sechium edule HOM05D005580 ORTHO05D006395 4.3e-41 171.8 112 70.5
Aa31LG10G10450 Aethionema arabicum HOM05D005580 ORTHO05D006395 5.7e-41 171.4 116 74.1
A09p48340 Brassica napus HOM05D005580 ORTHO05D006395 9.7e-41 170.6 125 68.8
BraA09t40286Z Brassica rapa HOM05D005580 ORTHO05D006395 9.7e-41 170.6 125 68.8
AT3G55420 Arabidopsis thaliana HOM05D005580 ORTHO05D006395 1.3e-40 170.2 125 68.8
BolC8t50680H Brassica oleracea HOM05D005580 ORTHO05D006395 1.7e-40 169.9 125 69.6
THA.LOC104807715 Tarenaya hassleriana HOM05D005580 ORTHO05D006395 2.2e-40 169.5 123 69.9
Carub.0005s2214 Capsella rubella HOM05D005580 ORTHO05D006395 2.8e-40 169.1 126 68.3
SGA_v2.0_scaffold221G42666 Striga asiatica HOM05D005580 ORTHO05D006395 2.8e-40 169.1 105 74.3
BcaC02g09755 Brassica carinata HOM05D005580 ORTHO05D006395 3.7e-40 168.7 125 67.2
C04p36960 Brassica napus HOM05D005580 ORTHO05D006395 3.7e-40 168.7 125 67.2
C08p30460 Brassica napus HOM05D005580 ORTHO05D006395 3.7e-40 168.7 125 68.0
BolC4t25261H Brassica oleracea HOM05D005580 ORTHO05D006395 3.7e-40 168.7 125 67.2
BcaC07g39844 Brassica carinata HOM05D005580 ORTHO05D006395 1.1e-39 167.2 125 68.0
A04p04530 Brassica napus HOM05D005580 ORTHO05D006395 1.4e-39 166.8 125 66.4
C08p30630 Brassica napus HOM05D005580 ORTHO05D006395 1.4e-39 166.8 125 67.2
BraA04t16163Z Brassica rapa HOM05D005580 ORTHO05D006395 1.4e-39 166.8 125 66.4
Migut.F01495 Erythranthe guttata HOM05D005580 ORTHO05D006395 3.1e-39 165.6 95 82.1
Oeu048246.1 Olea europaea HOM05D005580 ORTHO05D006395 4.1e-39 165.2 102 79.4
AUR62012083 Chenopodium quinoa HOM05D005580 ORTHO05D006395 5.3e-39 164.9 113 68.1
BcaB01g00102 Brassica carinata HOM05D005580 ORTHO05D006395 1.2e-38 163.7 126 65.9
AUR62039380 Chenopodium quinoa HOM05D000020 ORTHO05D001617 1.2e-38 163.7 113 68.1
CDE02G1824 Ceratophyllum demersum HOM05D005580 ORTHO05D006395 4.5e-38 161.8 116 65.5
Dinv26015 Davidia involucrata HOM05D005580 ORTHO05D006395 8.5e-37 157.5 104 71.2
Cc05_g01760 Coffea canephora HOM05D005580 ORTHO05D006395 3.2e-36 155.6 133 62.4
Os12g0571300 Oryza sativa ssp. japonica HOM05D005580 ORTHO05D006395 3.3e-33 145.6 122 59.0
BcaC07g39859 Brassica carinata HOM05D005580 ORTHO05D006395 7.4e-33 144.4 120 60.8
CARHR165440 Cardamine hirsuta HOM05D005580 ORTHO05D006395 3.2e-28 129.0 87 72.4
BcaB02g08423 Brassica carinata HOM05D005580 ORTHO05D006395 2.1e-27 126.3 87 71.3
Dinv03047 Davidia involucrata HOM05D005580 ORTHO05D006395 1.7e-21 106.7 120 55.8
SEGI_21732 Sequoiadendron giganteum HOM05D003049 ORTHO05D003531 1.0e-18 97.4 59 78.0
CDE08G0377 Ceratophyllum demersum HOM05D005580 ORTHO05D006395 3.5e-14 82.4 77 54.5
arahy.Tifrunner.gnm1.ann1.HEV3CF Arachis hypogaea HOM05D000969 ORTHO05D011765 4.5e-14 82.0 62 66.1
Aqoxy4G02929 Aquilegia oxysepala HOM05D005580 ORTHO05D006395 5.5e-12 75.1 39 87.2
AagrBONN_evm.TU.Sc2ySwM_117.4181 Anthoceros agrestis HOM05D025074 ORTHO05D006395 5.9e-06 55.1 99 28.3
AagrBONN_evm.TU.Sc2ySwM_117.4197 Anthoceros agrestis HOM05D025074 ORTHO05D006395 5.9e-06 55.1 99 28.3


User provided reference genes

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