Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10032926m.g Citrus clementina HOM05D008070 ORTHO05D001888 5.4e-87 324.3 168 100.0
Duzib251G0841 Durio zibethinus HOM05D008070 ORTHO05D001888 1.3e-27 127.1 167 44.9
Atru.chr11.2085 Acer truncatum HOM05D008070 ORTHO05D001888 1.1e-26 124.0 162 44.4
Atru.chr11.2086 Acer truncatum HOM05D008070 ORTHO05D001888 1.1e-26 124.0 162 44.4
Cfa009190 Carpinus fangiana HOM05D008070 ORTHO05D001888 5.0e-24 115.2 166 40.4
Haze_12224 Corylus avellana HOM05D008070 ORTHO05D001888 5.5e-23 111.7 174 38.5
Sed0022593 Sechium edule HOM05D008070 ORTHO05D001888 1.2e-22 110.5 138 39.9
TWI75G1444 Tripterygium wilfordii HOM05D008070 ORTHO05D001888 1.2e-22 110.5 169 42.0
Manes.12G025200 Manihot esculenta HOM05D008070 ORTHO05D001888 3.6e-22 109.0 162 38.3
MELO3C010682.2 Cucumis melo HOM05D008070 ORTHO05D001888 4.7e-22 108.6 127 42.5
TWI36G0098 Tripterygium wilfordii HOM05D008070 ORTHO05D001888 4.7e-22 108.6 172 39.5
CiPaw.06G069400 Carya illinoinensis HOM05D008070 ORTHO05D001888 6.1e-22 108.2 164 42.1
ClCG08G017790 Citrullus lanatus HOM05D008070 ORTHO05D001888 2.3e-21 106.3 154 39.0
Manes.13G026900 Manihot esculenta HOM05D008070 ORTHO05D001888 2.3e-21 106.3 163 35.0
CiPaw.05G184900 Carya illinoinensis HOM05D008070 ORTHO05D001888 3.0e-21 105.9 167 38.9
CsaV3_2G024840 Cucumis sativus L. HOM05D008070 ORTHO05D001888 4.4e-20 102.1 127 40.9
QL03p058723 Quercus lobata HOM05D010056 ORTHO05D001888 2.8e-19 99.4 166 34.3
CANSAT01G1404 Cannabis sativa HOM05D008070 ORTHO05D001888 8.3e-19 97.8 164 35.4
THA.LOC104822159 Tarenaya hassleriana HOM05D008070 ORTHO05D001888 1.1e-18 97.4 159 39.6
COL.COLO4_24233 Corchorus olitorius HOM05D008070 ORTHO05D001888 3.1e-18 95.9 168 40.5
Carub.0002s1726 Capsella rubella HOM05D008070 ORTHO05D001888 5.4e-18 95.1 143 39.2
TAR629G1731 Trochodendron aralioides HOM05D008070 ORTHO05D001888 5.4e-18 95.1 169 39.1
CARHR063750 Cardamine hirsuta HOM05D008070 ORTHO05D001888 7.0e-18 94.7 129 39.5
QL03p058730 Quercus lobata HOM05D008070 ORTHO05D001888 7.0e-18 94.7 150 36.0
AL2G29930 Arabidopsis lyrata HOM05D008070 ORTHO05D001888 1.6e-17 93.6 133 38.3
AT1G70540 Arabidopsis thaliana HOM05D008070 ORTHO05D001888 1.6e-17 93.6 133 38.3
AT1G10770 Arabidopsis thaliana HOM05D009121 ORTHO05D001888 2.0e-17 93.2 165 33.9
Carub.0001s1032 Capsella rubella HOM05D009121 ORTHO05D001888 2.0e-17 93.2 169 33.7
Sed0022116 Sechium edule HOM05D008070 ORTHO05D001888 5.9e-17 91.7 145 37.2
BcaC03g15202 Brassica carinata HOM05D008070 ORTHO05D001888 1.0e-16 90.9 130 38.5
C02p27870 Brassica napus HOM05D008070 ORTHO05D001888 1.0e-16 90.9 130 38.5
BolC2t08833H Brassica oleracea HOM05D008070 ORTHO05D001888 1.0e-16 90.9 130 38.5
Thhalv10008932m.g Eutrema salsugineum HOM05D009121 ORTHO05D001888 1.7e-16 90.1 165 30.9
A02p16620 Brassica napus HOM05D008070 ORTHO05D001888 2.9e-16 89.4 133 38.3
BraA02t06717Z Brassica rapa HOM05D008070 ORTHO05D001888 2.9e-16 89.4 130 37.7
Sp1g09470 Schrenkiella parvula HOM05D009121 ORTHO05D001888 3.8e-16 89.0 165 30.3
TAR622G1131 Trochodendron aralioides HOM05D008070 ORTHO05D001888 3.8e-16 89.0 165 38.2
BcaC05g24955 Brassica carinata HOM05D009121 ORTHO05D001888 8.6e-16 87.8 165 31.5
BolC5t29657H Brassica oleracea HOM05D009121 ORTHO05D001888 8.6e-16 87.8 165 30.3
AL1G21700 Arabidopsis lyrata HOM05D009121 ORTHO05D001888 1.1e-15 87.4 165 31.5
C05p09130 Brassica napus HOM05D009121 ORTHO05D001888 1.1e-15 87.4 165 30.3
Carub.0001s2294 Capsella rubella HOM05D008070 ORTHO05D001888 2.5e-15 86.3 132 37.9
CARHR010990 Cardamine hirsuta HOM05D009121 ORTHO05D001888 2.5e-15 86.3 165 32.7
CARHR023800 Cardamine hirsuta HOM05D008070 ORTHO05D001888 4.3e-15 85.5 150 34.0
Sed0024894 Sechium edule HOM05D008070 ORTHO05D001888 5.6e-15 85.1 141 35.5
BcaC07g38628 Brassica carinata HOM05D009121 ORTHO05D001888 9.5e-15 84.3 154 31.8
A06p07570 Brassica napus HOM05D009121 ORTHO05D001888 1.2e-14 84.0 165 29.7
BraA06t23959Z Brassica rapa HOM05D009121 ORTHO05D001888 1.2e-14 84.0 165 29.7
Thhalv10019249m.g Eutrema salsugineum HOM05D008070 ORTHO05D001888 1.2e-14 84.0 151 33.1
Sp5g25690 Schrenkiella parvula HOM05D008070 ORTHO05D001888 1.2e-14 84.0 142 34.5
AT1G23350 Arabidopsis thaliana HOM05D008070 ORTHO05D001888 2.8e-14 82.8 146 32.9
Eucgr.H02532 Eucalyptus grandis HOM05D008070 ORTHO05D001888 4.7e-14 82.0 167 32.9
THA.LOC104822979 Tarenaya hassleriana HOM05D008070 ORTHO05D001888 6.1e-14 81.6 160 32.5
AL1G37150 Arabidopsis lyrata HOM05D008070 ORTHO05D001888 8.0e-14 81.3 129 36.4
Cpa.g.sc69.89 Carica papaya HOM05D008070 ORTHO05D001888 8.0e-14 81.3 156 37.8
BcaB07g32331 Brassica carinata HOM05D008070 ORTHO05D001888 1.8e-13 80.1 131 35.9
AL3G17770 Arabidopsis lyrata HOM05D005742 ORTHO05D001888 3.0e-13 79.3 135 32.6
BcaB08g37374 Brassica carinata HOM05D009121 ORTHO05D001888 3.0e-13 79.3 165 27.9
CsaV3_5G031330 Cucumis sativus L. HOM05D008070 ORTHO05D001888 3.0e-13 79.3 164 30.5
THA.LOC104809586 Tarenaya hassleriana HOM05D009121 ORTHO05D001888 3.0e-13 79.3 154 33.8
C08p48520 Brassica napus HOM05D009121 ORTHO05D001888 4.0e-13 79.0 165 28.5
BraA09t41825Z Brassica rapa HOM05D009121 ORTHO05D001888 4.0e-13 79.0 165 28.5
MELO3C011974.2 Cucumis melo HOM05D008070 ORTHO05D001888 4.0e-13 79.0 164 32.3
Prupe.1G249100 Prunus persica HOM05D008070 ORTHO05D001888 4.0e-13 79.0 161 31.7
ATR1152G035 Amborella trichopoda HOM05D008070 ORTHO05D001888 5.2e-13 78.6 176 33.0
BolC8t52391H Brassica oleracea HOM05D009121 ORTHO05D001888 5.2e-13 78.6 165 28.5
Aa31LG2G9780 Aethionema arabicum HOM05D009121 ORTHO05D001888 6.8e-13 78.2 165 31.5
A09p64670 Brassica napus HOM05D009121 ORTHO05D001888 6.8e-13 78.2 165 28.5
THA.LOC104802706 Tarenaya hassleriana HOM05D005742 ORTHO05D001888 8.9e-13 77.8 138 29.7
Carub.0003s0617 Capsella rubella HOM05D005742 ORTHO05D001888 1.2e-12 77.4 156 30.1
THA.LOC104819351 Tarenaya hassleriana HOM05D009121 ORTHO05D001888 1.2e-12 77.4 152 30.3
BcaB03g11935 Brassica carinata HOM05D008070 ORTHO05D001888 2.0e-12 76.6 134 32.1
AT3G36659 Arabidopsis thaliana HOM05D005742 ORTHO05D001888 2.6e-12 76.3 131 29.8
BcaC05g26248 Brassica carinata HOM05D008070 ORTHO05D001888 3.4e-12 75.9 161 32.3
BcaC07g39196 Brassica carinata HOM05D008070 ORTHO05D001888 3.4e-12 75.9 132 34.1
A08p28210 Brassica napus HOM05D008070 ORTHO05D001888 3.4e-12 75.9 132 34.1
C05p22620 Brassica napus HOM05D008070 ORTHO05D001888 3.4e-12 75.9 161 32.3
BolC5t30961H Brassica oleracea HOM05D008070 ORTHO05D001888 3.4e-12 75.9 161 32.3
BolC8t49825H Brassica oleracea HOM05D008070 ORTHO05D001888 3.4e-12 75.9 132 34.1
BraA08t34752Z Brassica rapa HOM05D008070 ORTHO05D001888 3.4e-12 75.9 132 34.1
C08p21860 Brassica napus HOM05D008070 ORTHO05D001888 4.4e-12 75.5 132 34.1
Sp2g04000 Schrenkiella parvula HOM05D009121 ORTHO05D001888 4.4e-12 75.5 164 33.5
BolC7t42570H Brassica oleracea HOM05D008070 ORTHO05D001888 5.7e-12 75.1 144 34.0
Sp1g20800 Schrenkiella parvula HOM05D008070 ORTHO05D001888 5.7e-12 75.1 129 33.3
Aa31LG5G17240 Aethionema arabicum HOM05D005742 ORTHO05D001888 7.5e-12 74.7 131 28.2
Aa31LG7G7380 Aethionema arabicum HOM05D008070 ORTHO05D001888 7.5e-12 74.7 159 32.1
BcaC05g30549 Brassica carinata HOM05D005742 ORTHO05D001888 7.5e-12 74.7 137 28.5
Thhalv10022426m.g Eutrema salsugineum HOM05D005742 ORTHO05D001888 9.8e-12 74.3 132 31.8
BcaC06g35034 Brassica carinata HOM05D008070 ORTHO05D001888 1.3e-11 73.9 144 33.3
BcaC09g47911 Brassica carinata HOM05D005742 ORTHO05D001888 1.7e-11 73.6 137 29.2
BolC1t05594H Brassica oleracea HOM05D005742 ORTHO05D001888 1.7e-11 73.6 137 29.2
Sp3g05640 Schrenkiella parvula HOM05D005742 ORTHO05D001888 1.7e-11 73.6 135 32.6
THA.LOC104818886 Tarenaya hassleriana HOM05D005742 ORTHO05D001888 2.2e-11 73.2 142 31.0
BraA07t29145Z Brassica rapa HOM05D008070 ORTHO05D001888 2.9e-11 72.8 152 33.6
CARHR081260 Cardamine hirsuta HOM05D005742 ORTHO05D001888 2.9e-11 72.8 131 29.8
MELO3C011973.2 Cucumis melo HOM05D008070 ORTHO05D001888 2.9e-11 72.8 174 29.9
CDE04G3015 Ceratophyllum demersum HOM05D004884 ORTHO05D005873 3.7e-11 72.4 153 34.6
BcaB03g14151 Brassica carinata HOM05D008070 ORTHO05D001888 4.9e-11 72.0 163 31.9
Duzib248G0935 Durio zibethinus HOM05D008070 ORTHO05D001888 6.4e-11 71.6 165 35.8
Eucgr.H01005 Eucalyptus grandis HOM05D005742 ORTHO05D001888 6.4e-11 71.6 139 32.4
BcaC07g38589 Brassica carinata HOM05D009121 ORTHO05D001888 8.3e-11 71.2 168 31.0
CDE06G1547 Ceratophyllum demersum HOM05D004884 ORTHO05D005873 1.1e-10 70.9 139 35.3
AL2G15820 Arabidopsis lyrata HOM05D009121 ORTHO05D001888 1.4e-10 70.5 165 32.7
BNapus_Darmor_BZH_scaffold_118p00010 Brassica napus HOM05D005742 ORTHO05D001888 1.4e-10 70.5 131 29.0
BraA01t04423Z Brassica rapa HOM05D005742 ORTHO05D001888 1.4e-10 70.5 131 29.0
HPP92_017245 Vanilla planifolia HOM05D005742 ORTHO05D001888 1.4e-10 70.5 137 30.7
Sed0000802 Sechium edule HOM05D008070 ORTHO05D001888 1.8e-10 70.1 125 31.2
HPP92_027565 Vanilla planifolia HOM05D005742 ORTHO05D001888 2.4e-10 69.7 137 30.7
AT1G60760 Arabidopsis thaliana HOM05D009121 ORTHO05D001888 4.1e-10 68.9 165 32.1
Thhalv10008931m.g Eutrema salsugineum HOM05D008070 ORTHO05D001888 4.1e-10 68.9 162 29.6
MBI19_g03227_MAGBIO Magnolia biondii HOM05D005742 ORTHO05D001888 5.4e-10 68.6 160 28.1
ClCG10G011490 Citrullus lanatus HOM05D005742 ORTHO05D001888 9.2e-10 67.8 145 29.0
QL04p082607 Quercus lobata HOM05D010056 ORTHO05D001888 9.2e-10 67.8 162 26.5
A09p41290 Brassica napus HOM05D008070 ORTHO05D001888 1.6e-09 67.0 103 36.9
MELO3C017910.2 Cucumis melo HOM05D005742 ORTHO05D001888 1.6e-09 67.0 145 29.0
CDE06G2294 Ceratophyllum demersum HOM05D005742 ORTHO05D001888 2.0e-09 66.6 141 31.9
CDE07G0112 Ceratophyllum demersum HOM05D005742 ORTHO05D001888 2.0e-09 66.6 141 31.9
Actinidia18454 Actinidia chinensis HOM05D005742 ORTHO05D001888 2.7e-09 66.2 139 35.3
Actinidia40376 Actinidia chinensis HOM05D005742 ORTHO05D001888 2.7e-09 66.2 139 35.3
BraA09t39622Z Brassica rapa HOM05D008070 ORTHO05D001888 4.6e-09 65.5 133 32.3
Thhalv10024081m.g Eutrema salsugineum HOM05D009121 ORTHO05D001888 5.9e-09 65.1 131 32.1
TAR362G0759 Trochodendron aralioides HOM05D005742 ORTHO05D001888 5.9e-09 65.1 146 34.2
unitig_0.g2583 Utricularia gibba HOM05D005742 ORTHO05D001888 1.0e-08 64.3 141 30.5
CsaV3_4G001290 Cucumis sativus L. HOM05D005742 ORTHO05D001888 1.3e-08 63.9 145 28.3
QL04p082907 Quercus lobata HOM05D010056 ORTHO05D001888 1.3e-08 63.9 163 30.1
Rhsim04G0235100 Rhododendron simsii HOM05D005742 ORTHO05D001888 1.3e-08 63.9 136 30.1
Aa31LG1G4060 Aethionema arabicum HOM05D009121 ORTHO05D001888 1.7e-08 63.5 141 32.6
Cpa.g.sc9.68 Carica papaya HOM05D005742 ORTHO05D001888 1.7e-08 63.5 140 29.3
PSO017G3787 Papaver somniferum HOM05D020914 ORTHO05D023578 1.7e-08 63.5 180 30.0
PSO478G3987 Papaver somniferum HOM05D020914 ORTHO05D001888 1.7e-08 63.5 180 30.0
Actinidia15607 Actinidia chinensis HOM05D005742 ORTHO05D001888 2.3e-08 63.2 139 33.1
QL04p088745 Quercus lobata HOM05D010056 ORTHO05D001888 5.0e-08 62.0 149 28.9
Thecc.02G256200 Theobroma cacao HOM05D018853 ORTHO05D020509 5.0e-08 62.0 164 29.9
MSTRG.24819 Avicennia marina HOM05D005742 ORTHO05D001888 6.6e-08 61.6 159 26.4
Carub.0003s0619 Capsella rubella HOM05D005742 ORTHO05D001888 6.6e-08 61.6 129 29.5
QL04p087995 Quercus lobata HOM05D010056 ORTHO05D001888 6.6e-08 61.6 149 28.9
vmacro08056 Vaccinium macrocarpon HOM05D001258 ORTHO05D000158 6.6e-08 61.6 137 28.5
Dinv44293 Davidia involucrata HOM05D005742 ORTHO05D001888 8.6e-08 61.2 145 26.9
Hma1.2p1_0013F.1_g008650 Hydrangea macrophylla HOM05D005742 ORTHO05D001888 8.6e-08 61.2 146 27.4
Nn3g16774 Nelumbo nucifera HOM05D008070 ORTHO05D001888 8.6e-08 61.2 177 29.9
Carub.0002s0459 Capsella rubella HOM05D009121 ORTHO05D001888 1.1e-07 60.8 165 30.3
DCAR_026529 Daucus carota HOM05D009745 ORTHO05D011350 1.1e-07 60.8 154 30.5
CSS0018184 Camellia sinensis var. sinensis HOM05D005742 ORTHO05D001888 1.5e-07 60.5 141 29.8
CSS0026509 Camellia sinensis var. sinensis HOM05D005742 ORTHO05D001888 1.5e-07 60.5 141 29.8
CARHR051730 Cardamine hirsuta HOM05D009121 ORTHO05D001888 1.5e-07 60.5 130 32.3
MSTRG.21772 Avicennia marina HOM05D005742 ORTHO05D001888 1.9e-07 60.1 144 29.2
QL04p078865 Quercus lobata HOM05D010056 ORTHO05D001888 1.9e-07 60.1 129 27.9
Prupe.1G118800 Prunus persica HOM05D005742 ORTHO05D001888 2.5e-07 59.7 150 28.0
QL04p083524 Quercus lobata HOM05D010056 ORTHO05D001888 3.3e-07 59.3 150 29.3
CDE02G2547 Ceratophyllum demersum HOM05D005742 ORTHO05D001888 4.3e-07 58.9 144 27.1
Nn4g25584 Nelumbo nucifera HOM05D005742 ORTHO05D001888 4.3e-07 58.9 140 30.0
Oeu032017.1 Olea europaea HOM05D005742 ORTHO05D001888 9.5e-07 57.8 141 27.0
QL04p082952 Quercus lobata HOM05D010056 ORTHO05D001888 1.2e-06 57.4 127 29.1
CANSAT78G0521 Cannabis sativa HOM05D005742 ORTHO05D001888 1.6e-06 57.0 152 28.3
RcHm_v2.0_Chr4g0424831 Rosa chinensis HOM05D005742 ORTHO05D001888 1.6e-06 57.0 152 28.3
PGSC0003DMG400021845 Solanum tuberosum HOM05D005742 ORTHO05D001888 1.6e-06 57.0 152 27.0
Solyc01g059940.2 Solanum lycopersicum HOM05D005742 ORTHO05D001888 2.1e-06 56.6 152 27.0
Sopen01g026080 Solanum pennellii HOM05D005742 ORTHO05D001888 2.8e-06 56.2 152 27.0
TAR633G1530 Trochodendron aralioides HOM05D005742 ORTHO05D001888 2.8e-06 56.2 142 30.3
MD16G1155100 Malus domestica HOM05D005742 ORTHO05D001888 4.7e-06 55.5 151 27.8
DCAR_027000 Daucus carota HOM05D005742 ORTHO05D001888 6.2e-06 55.1 137 28.5
MBI10_g44381_MAGBIO Magnolia biondii HOM05D008070 ORTHO05D001888 6.2e-06 55.1 141 29.1
QL04p076408 Quercus lobata HOM05D010056 ORTHO05D001888 6.2e-06 55.1 129 26.4
QL05p047917 Quercus lobata HOM05D010056 ORTHO05D001888 8.0e-06 54.7 120 26.7


User provided reference genes

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