Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10032884m.g Citrus clementina HOM05D006899 ORTHO05D008566 2.4e-80 302.4 180 100.0
Atru.chr6.2058 Acer truncatum HOM05D006899 ORTHO05D008566 2.4e-56 222.6 185 81.6
QL08p044873 Quercus lobata HOM05D006899 ORTHO05D008566 1.2e-55 220.3 191 67.0
Thecc.01G170200 Theobroma cacao HOM05D006899 ORTHO05D008566 3.8e-54 215.3 176 69.3
GSVIVG01020847001 Vitis vinifera HOM05D006899 ORTHO05D008566 8.5e-54 214.2 173 70.5
Rhsim04G0081600 Rhododendron simsii HOM05D006899 ORTHO05D008566 1.1e-53 213.8 192 65.6
Potri.005G204200 Populus trichocarpa HOM05D006899 ORTHO05D008566 1.4e-53 213.4 173 68.8
Gorai.001G092300 Gossypium raimondii HOM05D006899 ORTHO05D008566 3.2e-53 212.2 178 66.3
Gohir.A07G080700 Gossypium hirsutum HOM05D006899 ORTHO05D008566 9.4e-53 210.7 179 67.0
Cfa023072 Carpinus fangiana HOM05D006899 ORTHO05D008566 1.2e-52 210.3 191 63.4
Gohir.D07G086300 Gossypium hirsutum HOM05D006899 ORTHO05D008566 2.7e-52 209.1 179 66.5
COL.COLO4_08896 Corchorus olitorius HOM05D006899 ORTHO05D008566 6.1e-52 208.0 194 64.4
vmacro09192 Vaccinium macrocarpon HOM05D006899 ORTHO05D008566 7.9e-52 207.6 188 62.8
CiPaw.04G138700 Carya illinoinensis HOM05D006899 ORTHO05D008566 1.0e-51 207.2 190 61.6
Potri.002G058000 Populus trichocarpa HOM05D006899 ORTHO05D008566 1.8e-51 206.5 193 64.2
Duzib138G0065 Durio zibethinus HOM05D006899 ORTHO05D008566 1.5e-50 203.4 182 64.3
PGR042G1005 Punica granatum HOM05D006899 ORTHO05D008566 5.7e-50 201.4 193 62.2
VMungo0647G1903 Vigna mungo HOM05D006899 ORTHO05D008566 5.7e-50 201.4 119 87.4
Haze_13530 Corylus avellana HOM05D006899 ORTHO05D008566 9.7e-50 200.7 227 53.7
Nitab4.5_0002251g0050 Nicotiana tabacum HOM05D006899 ORTHO05D008566 1.3e-49 200.3 188 62.2
Phvul.008G193700 Phaseolus vulgaris HOM05D006899 ORTHO05D008566 1.7e-49 199.9 186 62.9
Cpa.g.sc50.104 Carica papaya HOM05D006899 ORTHO05D008566 2.2e-49 199.5 119 84.0
Glyma.02G285100 Glycine max HOM05D006899 ORTHO05D008566 6.3e-49 198.0 119 86.6
Nn4g26539 Nelumbo nucifera HOM05D006899 ORTHO05D008566 8.2e-49 197.6 178 65.7
TWI59G0652 Tripterygium wilfordii HOM05D006899 ORTHO05D008566 1.8e-48 196.4 189 63.5
TPR.G12679 Trifolium pratense HOM05D006899 ORTHO05D008566 2.4e-48 196.1 175 64.0
TAR627G0648 Trochodendron aralioides HOM05D006899 ORTHO05D008566 2.4e-48 196.1 172 63.4
Peaxi162Scf00111g00221 Petunia axillaris HOM05D006899 ORTHO05D008566 3.1e-48 195.7 187 61.5
Sabra02G0047300 Salix brachista HOM05D006899 ORTHO05D008566 3.1e-48 195.7 192 61.5
Nitab4.5_0001883g0020 Nicotiana tabacum HOM05D006899 ORTHO05D008566 4.1e-48 195.3 189 60.8
Prupe.3G176400 Prunus persica HOM05D006899 ORTHO05D008566 5.3e-48 194.9 172 65.7
Glyma.14G029700 Glycine max HOM05D006899 ORTHO05D008566 1.6e-47 193.4 171 66.1
Medtr5g091190 Medicago truncatula HOM05D006899 ORTHO05D008566 1.6e-47 193.4 173 62.4
arahy.Tifrunner.gnm1.ann1.SNQ1P9 Arachis hypogaea HOM05D006899 ORTHO05D008566 7.7e-47 191.0 188 61.7
Actinidia03641 Actinidia chinensis HOM05D006899 ORTHO05D008566 1.3e-46 190.3 120 83.3
MELO3C026968.2 Cucumis melo HOM05D006899 ORTHO05D008566 1.7e-46 189.9 119 82.4
ClCG11G016470 Citrullus lanatus HOM05D006899 ORTHO05D008566 2.2e-46 189.5 118 82.2
LjContig00049g0021241 Lotus japonicus HOM05D006899 ORTHO05D008566 2.9e-46 189.1 187 60.4
CsaV3_4G031920 Cucumis sativus L. HOM05D006899 ORTHO05D008566 3.8e-46 188.7 119 81.5
MD09G1149700 Malus domestica HOM05D006899 ORTHO05D008566 3.8e-46 188.7 178 61.2
arahy.Tifrunner.gnm1.ann1.226PX6 Arachis hypogaea HOM05D006899 ORTHO05D008566 6.5e-46 188.0 188 62.2
FAN09G4704 Fragaria x ananassa HOM05D006899 ORTHO05D008566 6.5e-46 188.0 175 61.1
Oeu020934.1 Olea europaea HOM05D006899 ORTHO05D008566 6.5e-46 188.0 119 80.7
PGSC0003DMG400017304 Solanum tuberosum HOM05D006899 ORTHO05D008566 1.1e-45 187.2 119 81.5
Sopen07g029600 Solanum pennellii HOM05D006899 ORTHO05D008566 1.9e-45 186.4 185 60.5
FvH4_6g38570 Fragaria vesca HOM05D006899 ORTHO05D008566 2.5e-45 186.0 176 61.4
Sed0025977 Sechium edule HOM05D006899 ORTHO05D008566 4.2e-45 185.3 194 59.8
FAN05G4631 Fragaria x ananassa HOM05D006899 ORTHO05D008566 5.5e-45 184.9 176 61.4
Oeu013822.1 Olea europaea HOM05D006899 ORTHO05D008566 5.5e-45 184.9 119 79.8
Manes.10G088300 Manihot esculenta HOM05D006899 ORTHO05D008566 1.2e-44 183.7 191 61.8
Solyc07g056240.3 Solanum lycopersicum HOM05D006899 ORTHO05D008566 1.2e-44 183.7 184 59.8
MD17G1136600 Malus domestica HOM05D006899 ORTHO05D008566 2.7e-44 182.6 171 62.0
Dinv09142 Davidia involucrata HOM05D006899 ORTHO05D008566 3.6e-44 182.2 165 63.6
AT2G42975 Arabidopsis thaliana HOM05D006899 ORTHO05D008566 4.7e-44 181.8 120 82.5
Eucgr.A02015 Eucalyptus grandis HOM05D006899 ORTHO05D008566 4.7e-44 181.8 187 60.4
RcHm_v2.0_Chr2g0151981 Rosa chinensis HOM05D006899 ORTHO05D008566 4.7e-44 181.8 172 61.0
CANSAT64G2357 Cannabis sativa HOM05D006899 ORTHO05D008566 6.1e-44 181.4 180 62.2
Cc05_g09700 Coffea canephora HOM05D006899 ORTHO05D008566 6.1e-44 181.4 184 60.3
Hund24233 Selenicereus undatus HOM05D006899 ORTHO05D008566 6.1e-44 181.4 195 57.9
FAN02G3475 Fragaria x ananassa HOM05D006899 ORTHO05D008566 1.8e-43 179.9 117 79.5
FAN14G2046 Fragaria x ananassa HOM05D006899 ORTHO05D008566 1.8e-43 179.9 117 79.5
Aa31LG1G24750 Aethionema arabicum HOM05D006899 ORTHO05D008566 4.0e-43 178.7 119 77.3
MSTRG.12841 Avicennia marina HOM05D006899 ORTHO05D008566 4.0e-43 178.7 190 56.8
Sp4g25100 Schrenkiella parvula HOM05D006899 ORTHO05D008566 5.2e-43 178.3 120 80.0
AL4G41610 Arabidopsis lyrata HOM05D006899 ORTHO05D008566 6.7e-43 177.9 120 80.0
Sc13g0007020 Simmondsia chinensis HOM05D006899 ORTHO05D008566 6.7e-43 177.9 119 78.2
BcaC02g07213 Brassica carinata HOM05D006899 ORTHO05D008566 8.8e-43 177.6 122 77.9
C04p70000 Brassica napus HOM05D006899 ORTHO05D008566 8.8e-43 177.6 122 77.9
BolC4t28500H Brassica oleracea HOM05D006899 ORTHO05D008566 8.8e-43 177.6 122 77.9
Duzib133G1045 Durio zibethinus HOM05D006899 ORTHO05D008566 1.2e-42 177.2 191 56.5
Carub.0004s2544 Capsella rubella HOM05D006899 ORTHO05D008566 3.3e-42 175.6 188 66.0
BcaB06g29274 Brassica carinata HOM05D006899 ORTHO05D008566 7.5e-42 174.5 124 76.6
Thhalv10017256m.g Eutrema salsugineum HOM05D006899 ORTHO05D008566 1.7e-41 173.3 122 77.0
BNapus_Darmor_BZH_scaffold_64p00160 Brassica napus HOM05D006899 ORTHO05D008566 2.2e-41 172.9 121 77.7
BraA04t18701Z Brassica rapa HOM05D006899 ORTHO05D008566 2.2e-41 172.9 121 77.7
SalBow7G1887 Salvia bowleyana HOM05D006899 ORTHO05D008566 2.2e-41 172.9 119 75.6
SGA_v2.0_scaffold4G02123 Striga asiatica HOM05D006899 ORTHO05D008566 3.7e-41 172.2 120 75.8
CARHR138030 Cardamine hirsuta HOM05D006899 ORTHO05D008566 4.8e-41 171.8 120 76.7
CSS0032532 Camellia sinensis var. sinensis HOM05D006899 ORTHO05D008566 3.1e-40 169.1 186 58.6
THA.LOC104803370 Tarenaya hassleriana HOM05D006899 ORTHO05D008566 1.2e-39 167.2 121 74.4
THA.LOC104802283 Tarenaya hassleriana HOM05D006899 ORTHO05D008566 2.0e-39 166.4 121 75.2
Migut.E01772 Erythranthe guttata HOM05D006899 ORTHO05D008566 2.7e-39 166.0 181 54.7
AUR62015134 Chenopodium quinoa HOM05D006899 ORTHO05D008566 4.5e-39 165.2 170 60.6
MBI10_g21113_MAGBIO Magnolia biondii HOM05D006899 ORTHO05D008566 7.7e-39 164.5 198 54.5
Aqoxy1G02918 Aquilegia oxysepala HOM05D006899 ORTHO05D008566 1.0e-38 164.1 120 71.7
EL10Ac9g22843 Beta vulgaris HOM05D006899 ORTHO05D008566 1.3e-38 163.7 202 53.5
Lalb_Chr04g0248871 Lupinus albus HOM05D006899 ORTHO05D008566 3.8e-38 162.2 98 84.7
AUR62017595 Chenopodium quinoa HOM05D006899 ORTHO05D008566 5.0e-38 161.8 195 55.4
Lj1P601T16 Lonicera japonica HOM05D006899 ORTHO05D008566 3.0e-35 152.5 87 86.2
ECA233G0523 Erigeron canadensis HOM05D006899 ORTHO05D008566 4.0e-35 152.1 119 68.1
Ah.01g013620 Amaranthus hybridus HOM05D006899 ORTHO05D008566 1.2e-34 150.6 100 80.0
CSS0025344 Camellia sinensis var. sinensis HOM05D006899 ORTHO05D008566 4.4e-34 148.7 185 51.9
HanXRQChr17g0554721 Helianthus annuus HOM05D006899 ORTHO05D008566 8.3e-33 144.4 119 65.5
Os01g0666600 Oryza sativa ssp. japonica HOM05D006899 ORTHO05D008566 6.5e-30 134.8 124 61.3
Lsat_1_v5_gn_8_137860 Lactuca sativa HOM05D006899 ORTHO05D008566 1.1e-29 134.0 114 61.4
CDE05G0801 Ceratophyllum demersum HOM05D006899 ORTHO05D008566 2.5e-29 132.9 120 62.5
PSO478G1301 Papaver somniferum HOM05D006899 ORTHO05D008566 7.2e-29 131.3 189 48.1
PSO675G8667 Papaver somniferum HOM05D006899 ORTHO05D008566 9.5e-29 131.0 189 47.6
ATR0585G139 Amborella trichopoda HOM05D006899 ORTHO05D008566 1.8e-27 126.7 107 64.5
PSO541G6147 Papaver somniferum HOM05D006899 ORTHO05D008566 6.8e-27 124.8 121 62.8
Zm00001eb157430 Zea mays HOM05D006899 ORTHO05D008566 6.8e-27 124.8 127 57.5
Hund24244 Selenicereus undatus HOM05D006899 ORTHO05D008566 1.2e-26 124.0 156 51.9
unitig_60.g25592 Utricularia gibba HOM05D006899 ORTHO05D008566 9.8e-26 120.9 121 57.9
Nitab4.5_0004243g0030 Nicotiana tabacum HOM05D006899 ORTHO05D008566 2.8e-25 119.4 83 75.9
HPP92_010055 Vanilla planifolia HOM05D006899 ORTHO05D008566 4.9e-25 118.6 118 57.6
Nitab4.5_0004950g0010 Nicotiana tabacum HOM05D006899 ORTHO05D008566 3.5e-23 112.5 81 75.3
Nitab4.5_0009604g0020 Nicotiana tabacum HOM05D006899 ORTHO05D008566 3.5e-23 112.5 81 75.3
Pp3c13_6560 Physcomitrium patens HOM05D006899 ORTHO05D008566 1.1e-21 107.5 118 52.5
TWI23G0441 Tripterygium wilfordii HOM05D006899 ORTHO05D008566 7.3e-21 104.8 122 54.1
Nitab4.5_0002251g0080 Nicotiana tabacum HOM05D006899 ORTHO05D008566 6.8e-19 98.2 111 53.2
Mapoly0120s0054 Marchantia polymorpha HOM05D006899 ORTHO05D008566 2.6e-18 96.3 120 48.3
AagrBONN_evm.TU.Sc2ySwM_368.298 Anthoceros agrestis HOM05D006899 ORTHO05D008566 3.2e-16 89.4 122 43.4
Medtr5g016040 Medicago truncatula HOM05D006899 ORTHO05D008566 3.5e-15 85.9 80 60.0
SMO353G0201 Selaginella moellendorffii HOM05D006899 ORTHO05D008566 6.8e-11 71.6 90 46.7
Medtr7g035145 Medicago truncatula HOM05D006899 ORTHO05D008566 3.7e-09 65.9 66 47.0
Duzib130G0001 Durio zibethinus HOM05D006899 ORTHO05D008566 3.2e-08 62.8 90 46.7


User provided reference genes

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