Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10032864m.g Citrus clementina HOM05D005391 ORTHO05D006694 4.1e-88 328.2 184 100.0
Atru.chr6.1808 Acer truncatum HOM05D005391 ORTHO05D006694 1.3e-57 226.9 188 68.1
Dinv23158 Davidia involucrata HOM05D005391 ORTHO05D006694 2.4e-51 206.1 184 67.9
Gorai.001G058300 Gossypium raimondii HOM05D005391 ORTHO05D006694 9.0e-51 204.1 202 62.9
TWI14G1436 Tripterygium wilfordii HOM05D005391 ORTHO05D006694 1.5e-50 203.4 200 60.0
Gohir.A07G050600 Gossypium hirsutum HOM05D005391 ORTHO05D006694 2.0e-50 203.0 202 62.4
Gohir.D07G055100 Gossypium hirsutum HOM05D005391 ORTHO05D006694 2.6e-50 202.6 202 62.4
TWI23G0649 Tripterygium wilfordii HOM05D005391 ORTHO05D006694 2.6e-50 202.6 200 60.0
Prupe.1G358600 Prunus persica HOM05D005391 ORTHO05D006694 7.6e-50 201.1 187 66.8
CiPaw.12G044000 Carya illinoinensis HOM05D005391 ORTHO05D006694 1.3e-49 200.3 197 60.9
Actinidia36818 Actinidia chinensis HOM05D005391 ORTHO05D006694 1.7e-49 199.9 180 64.4
Thecc.03G130500 Theobroma cacao HOM05D005391 ORTHO05D006694 2.9e-49 199.1 202 60.4
CSS0043065 Camellia sinensis var. sinensis HOM05D005391 ORTHO05D006694 1.4e-48 196.8 192 63.0
COL.COLO4_28143 Corchorus olitorius HOM05D005391 ORTHO05D006694 3.2e-48 195.7 203 60.1
CiPaw.11G006200 Carya illinoinensis HOM05D005391 ORTHO05D006694 5.4e-48 194.9 201 59.2
Potri.015G097800 Populus trichocarpa HOM05D005391 ORTHO05D006694 1.2e-47 193.7 202 62.4
vmacro16727 Vaccinium macrocarpon HOM05D005391 ORTHO05D006694 2.7e-47 192.6 192 60.4
CSS0003205 Camellia sinensis var. sinensis HOM05D005391 ORTHO05D006694 3.5e-47 192.2 196 63.3
CSS0033680 Camellia sinensis var. sinensis HOM05D005391 ORTHO05D006694 3.5e-47 192.2 196 63.3
MD15G1005900 Malus domestica HOM05D005391 ORTHO05D006694 4.6e-47 191.8 191 64.4
Manes.14G050400 Manihot esculenta HOM05D005391 ORTHO05D006694 4.6e-47 191.8 210 58.1
FAN20G0870 Fragaria x ananassa HOM05D005391 ORTHO05D006694 6.0e-47 191.4 189 61.4
FAN15G0439 Fragaria x ananassa HOM05D005391 ORTHO05D006694 1.0e-46 190.7 189 61.4
Duzib205G0229 Durio zibethinus HOM05D005391 ORTHO05D006694 1.3e-46 190.3 213 56.8
Cpa.g.sc13.100 Carica papaya HOM05D005391 ORTHO05D006694 2.3e-46 189.5 185 63.2
TAR629G0488 Trochodendron aralioides HOM05D005391 ORTHO05D006694 3.0e-46 189.1 184 61.4
FvH4_2g37750 Fragaria vesca HOM05D005391 ORTHO05D006694 3.9e-46 188.7 193 62.7
Potri.012G099200 Populus trichocarpa HOM05D005391 ORTHO05D006694 3.9e-46 188.7 178 68.0
Lsat_1_v5_gn_4_81240 Lactuca sativa HOM05D005391 ORTHO05D006694 8.7e-46 187.6 192 59.9
Nn4g22289 Nelumbo nucifera HOM05D005391 ORTHO05D006694 1.1e-45 187.2 170 64.7
Sed0002904 Sechium edule HOM05D005391 ORTHO05D006694 1.1e-45 187.2 196 58.7
MD08G1006700 Malus domestica HOM05D005391 ORTHO05D006694 1.5e-45 186.8 195 60.0
FAN27G0224 Fragaria x ananassa HOM05D005391 ORTHO05D006694 1.9e-45 186.4 190 62.1
Peaxi162Scf00045g01932 Petunia axillaris HOM05D005391 ORTHO05D006694 3.3e-45 185.7 188 59.0
MBI07_g28244_MAGBIO Magnolia biondii HOM05D005391 ORTHO05D006694 4.3e-45 185.3 183 60.1
TAR371G0831 Trochodendron aralioides HOM05D005391 ORTHO05D006694 5.6e-45 184.9 173 60.7
Sabra15G0118500 Salix brachista HOM05D005391 ORTHO05D006694 1.3e-44 183.7 214 57.5
Cc08_g07550 Coffea canephora HOM05D005391 ORTHO05D006694 8.1e-44 181.0 211 57.3
Sabra12G0072400 Salix brachista HOM05D005391 ORTHO05D006694 8.1e-44 181.0 182 65.4
Rhsim12G0176000 Rhododendron simsii HOM05D005391 ORTHO05D006694 1.1e-43 180.6 189 59.8
GSVIVG01008565001 Vitis vinifera HOM05D005391 ORTHO05D006694 1.8e-43 179.9 173 66.5
FAN26G2573 Fragaria x ananassa HOM05D005391 ORTHO05D006694 3.1e-43 179.1 182 61.0
ECA232G1626 Erigeron canadensis HOM05D005391 ORTHO05D006694 4.0e-43 178.7 191 57.6
Nn3g16438 Nelumbo nucifera HOM05D005391 ORTHO05D006694 6.9e-43 177.9 184 57.6
Sp2g26560 Schrenkiella parvula HOM05D005391 ORTHO05D006694 6.9e-43 177.9 179 60.3
Cfa018784 Carpinus fangiana HOM05D005391 ORTHO05D006694 9.0e-43 177.6 198 60.6
DCAR_016386 Daucus carota HOM05D005391 ORTHO05D006694 2.6e-42 176.0 187 58.8
Haze_07152 Corylus avellana HOM05D005391 ORTHO05D006694 3.4e-42 175.6 198 60.1
CANSAT80G1472 Cannabis sativa HOM05D005391 ORTHO05D006694 4.5e-42 175.3 208 53.8
Ca_16053_v3 Cicer arietinum L. HOM05D005391 ORTHO05D006694 4.5e-42 175.3 188 55.9
CARHR277330 Cardamine hirsuta HOM05D005391 ORTHO05D006694 5.8e-42 174.9 181 60.8
Oeu009657.1 Olea europaea HOM05D005391 ORTHO05D006694 7.6e-42 174.5 218 54.1
Glyma.06G169200 Glycine max HOM05D005391 ORTHO05D006694 1.0e-41 174.1 173 61.8
THA.LOC104798944 Tarenaya hassleriana HOM05D005391 ORTHO05D006694 1.0e-41 174.1 190 58.4
AUR62003784 Chenopodium quinoa HOM05D005391 ORTHO05D006694 2.9e-41 172.6 183 56.3
PGSC0003DMG400026284 Solanum tuberosum HOM05D005391 ORTHO05D006694 3.8e-41 172.2 197 53.8
SGA_v2.0_scaffold169G38603 Striga asiatica HOM05D005391 ORTHO05D006694 3.8e-41 172.2 196 57.7
Psat5g051960 Pisum sativum HOM05D005391 ORTHO05D006694 6.5e-41 171.4 186 54.8
TPR.G14215 Trifolium pratense HOM05D005391 ORTHO05D006694 6.5e-41 171.4 189 55.6
Nitab4.5_0000264g0120 Nicotiana tabacum HOM05D005391 ORTHO05D006694 8.4e-41 171.0 203 53.2
PSO478G3696 Papaver somniferum HOM05D005391 ORTHO05D006694 8.4e-41 171.0 176 58.0
CsaV3_1G000500 Cucumis sativus L. HOM05D005391 ORTHO05D006694 1.1e-40 170.6 203 53.7
PSO017G3900 Papaver somniferum HOM05D005391 ORTHO05D006694 1.4e-40 170.2 176 57.4
AUR62002017 Chenopodium quinoa HOM05D005391 ORTHO05D006694 1.9e-40 169.9 183 56.3
Glyma.04G196600 Glycine max HOM05D005391 ORTHO05D006694 2.5e-40 169.5 184 57.6
Lalb_Chr23g0273681 Lupinus albus HOM05D005391 ORTHO05D006694 2.5e-40 169.5 189 57.1
Medtr3g099130 Medicago truncatula HOM05D005391 ORTHO05D006694 2.5e-40 169.5 187 57.8
Lj5A95T81 Lonicera japonica HOM05D005391 ORTHO05D006694 4.2e-40 168.7 211 55.0
RcHm_v2.0_Chr6g0303761 Rosa chinensis HOM05D005391 ORTHO05D006694 4.2e-40 168.7 202 57.9
Hund08624 Selenicereus undatus HOM05D005391 ORTHO05D006694 4.2e-40 168.7 181 56.4
MELO3C026202.2 Cucumis melo HOM05D005391 ORTHO05D006694 5.5e-40 168.3 203 53.2
AL8G40540 Arabidopsis lyrata HOM05D005391 ORTHO05D006694 9.3e-40 167.5 181 56.9
QL10p002677 Quercus lobata HOM05D005391 ORTHO05D006694 9.3e-40 167.5 185 60.0
Phvul.009G165600 Phaseolus vulgaris HOM05D005391 ORTHO05D006694 2.7e-39 166.0 188 62.8
A09p08280 Brassica napus HOM05D005391 ORTHO05D006694 3.5e-39 165.6 171 58.5
EL10Ac6g15093 Beta vulgaris HOM05D005391 ORTHO05D006694 6.0e-39 164.9 187 55.1
C03p62960 Brassica napus HOM05D005391 ORTHO05D006694 6.0e-39 164.9 178 57.3
BraA09t36478Z Brassica rapa HOM05D005391 ORTHO05D006694 6.0e-39 164.9 171 57.9
BolC3t18550H Brassica oleracea HOM05D005391 ORTHO05D006694 7.9e-39 164.5 178 57.3
BcaB04g19920 Brassica carinata HOM05D005391 ORTHO05D006694 2.3e-38 162.9 176 55.7
Migut.E01449 Erythranthe guttata HOM05D005391 ORTHO05D006694 3.0e-38 162.5 216 50.5
Lj1g0005006 Lotus japonicus HOM05D005391 ORTHO05D006694 3.9e-38 162.2 186 55.9
Solyc08g006670.3 Solanum lycopersicum HOM05D005391 ORTHO05D006694 3.9e-38 162.2 197 55.3
Sopen08g002620 Solanum pennellii HOM05D005391 ORTHO05D006694 3.9e-38 162.2 197 55.3
Ah.03g143420 Amaranthus hybridus HOM05D005391 ORTHO05D006694 6.7e-38 161.4 185 54.1
Thhalv10004987m.g Eutrema salsugineum HOM05D005391 ORTHO05D006694 8.7e-38 161.0 185 55.7
MSTRG.25825 Avicennia marina HOM05D005391 ORTHO05D006694 1.9e-37 159.8 214 51.4
A06p30110 Brassica napus HOM05D005391 ORTHO05D006694 1.9e-37 159.8 178 56.2
BraA06t25962Z Brassica rapa HOM05D005391 ORTHO05D006694 1.9e-37 159.8 178 56.2
arahy.Tifrunner.gnm1.ann1.S11VKX Arachis hypogaea HOM05D005391 ORTHO05D006694 2.5e-37 159.5 204 51.5
Aa31LG1G18560 Aethionema arabicum HOM05D005391 ORTHO05D006694 5.7e-37 158.3 191 52.9
ClCG06G017970 Citrullus lanatus HOM05D005391 ORTHO05D006694 1.3e-36 157.1 247 44.1
ATR0171G017 Amborella trichopoda HOM05D005391 ORTHO05D006694 1.1e-35 154.1 173 53.8
BcaB02g09758 Brassica carinata HOM05D005391 ORTHO05D006694 1.8e-35 153.3 186 52.7
CDE10G0912 Ceratophyllum demersum HOM05D005391 ORTHO05D006694 1.8e-35 153.3 172 54.1
arahy.Tifrunner.gnm1.ann1.3A01UJ Arachis hypogaea HOM05D005391 ORTHO05D006694 4.1e-35 152.1 212 49.5
SalBow8G3527 Salvia bowleyana HOM05D005391 ORTHO05D006694 6.9e-35 151.4 212 53.8
Carub.0008s2418 Capsella rubella HOM05D005391 ORTHO05D006694 1.2e-34 150.6 180 54.4
CDE04G2377 Ceratophyllum demersum HOM05D005391 ORTHO05D006694 1.2e-34 150.6 170 54.7
AT5G63480 Arabidopsis thaliana HOM05D005391 ORTHO05D006694 2.0e-34 149.8 181 57.5
unitig_32.g10935 Utricularia gibba HOM05D005391 ORTHO05D006694 3.4e-34 149.1 224 47.3
Aqoxy3G01572 Aquilegia oxysepala HOM05D005391 ORTHO05D006694 4.5e-34 148.7 182 50.5
BolC9t53848H Brassica oleracea HOM05D005391 ORTHO05D006694 2.9e-33 146.0 167 53.9
Zm00001eb421130 Zea mays HOM05D005391 ORTHO05D006694 2.5e-32 142.9 181 49.7
arahy.Tifrunner.gnm1.ann1.CP8X4X Arachis hypogaea HOM05D005391 ORTHO05D006694 3.5e-31 139.0 246 42.7
arahy.Tifrunner.gnm1.ann1.HT4698 Arachis hypogaea HOM05D005391 ORTHO05D006694 3.5e-31 139.0 246 42.7
Aqoxy3G00618 Aquilegia oxysepala HOM05D005391 ORTHO05D006694 6.1e-31 138.3 179 54.2
BcaC04g23332 Brassica carinata HOM05D005391 ORTHO05D006694 6.1e-31 138.3 167 52.7
C09p09360 Brassica napus HOM05D005391 ORTHO05D006694 6.1e-31 138.3 167 52.7
Actinidia08882 Actinidia chinensis HOM05D005391 ORTHO05D006694 8.7e-30 134.4 150 58.0
HanXRQChr09g0273301 Helianthus annuus HOM05D005391 ORTHO05D006694 1.9e-29 133.3 143 55.2
FAN23G2258 Fragaria x ananassa HOM05D005391 ORTHO05D006694 9.0e-27 124.4 151 57.0
Nitab4.5_0001362g0010 Nicotiana tabacum HOM05D005391 ORTHO05D006694 9.0e-27 124.4 203 43.8
HPP92_023119 Vanilla planifolia HOM05D005391 ORTHO05D006694 1.6e-23 113.6 178 46.6
CSS0010891 Camellia sinensis var. sinensis HOM05D005391 ORTHO05D006694 2.1e-23 113.2 126 61.1
SEGI_01116 Sequoiadendron giganteum HOM05D005391 ORTHO05D006694 2.1e-23 113.2 180 43.9
DCAR_021623 Daucus carota HOM05D005391 ORTHO05D006694 2.7e-23 112.8 169 43.8
Oeu040668.1 Olea europaea HOM05D005391 ORTHO05D006694 3.6e-23 112.5 155 50.3
FAN23G0903 Fragaria x ananassa HOM05D005391 ORTHO05D006694 1.8e-22 110.2 180 48.9
Ca_01190_v3 Cicer arietinum L. HOM05D005391 ORTHO05D006694 5.7e-21 105.1 152 46.7
Sc04g0000550 Simmondsia chinensis HOM05D005391 ORTHO05D006694 9.7e-21 104.4 145 49.0
Ah.07g204620 Amaranthus hybridus HOM05D005391 ORTHO05D006694 1.7e-20 103.6 152 48.7
Pp3c7_3280 Physcomitrium patens HOM05D005391 ORTHO05D006694 4.1e-19 99.0 197 38.6
Mapoly0007s0225 Marchantia polymorpha HOM05D005391 ORTHO05D006694 6.9e-19 98.2 165 39.4
VMungo1309G0665 Vigna mungo HOM05D005391 ORTHO05D006694 9.1e-19 97.8 125 59.2
SMO364G0653 Selaginella moellendorffii HOM05D005391 ORTHO05D006694 1.1e-16 90.9 164 36.0
CSS0049043 Camellia sinensis var. sinensis HOM05D005391 ORTHO05D006694 1.2e-15 87.4 67 65.7
Gohir.1Z049409 Gossypium hirsutum HOM05D005391 ORTHO05D006694 2.1e-15 86.7 129 45.7
AagrBONN_evm.TU.Sc2ySwM_369.268 Anthoceros agrestis HOM05D005391 ORTHO05D006694 6.1e-15 85.1 167 34.1
Os04g0388601 Oryza sativa ssp. japonica HOM05D005391 ORTHO05D006694 1.8e-14 83.6 172 43.6
Zm00001eb085410 Zea mays HOM05D005391 ORTHO05D006694 2.4e-11 73.2 119 48.7
SEGI_13536 Sequoiadendron giganteum HOM05D005391 ORTHO05D006694 1.7e-09 67.0 158 33.5
Hund13632 Selenicereus undatus HOM05D005391 ORTHO05D006694 2.7e-07 59.7 150 32.7
BcaB07g29688 Brassica carinata HOM05D005391 ORTHO05D006694 8.8e-06 54.7 34 70.6


User provided reference genes

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