Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10032844m.g Citrus clementina HOM05D005240 ORTHO05D006471 1.7e-108 396.0 190 100.0
CSS0026127 Camellia sinensis var. sinensis HOM05D005240 ORTHO05D006471 1.2e-79 300.1 160 86.2
Gohir.A05G344500 Gossypium hirsutum HOM05D005240 ORTHO05D006471 4.9e-76 288.1 166 79.5
Gorai.012G093700 Gossypium raimondii HOM05D005240 ORTHO05D006471 2.4e-75 285.8 166 78.3
QL08p056831 Quercus lobata HOM05D005240 ORTHO05D006471 2.4e-75 285.8 170 77.6
Rhsim10G0162300 Rhododendron simsii HOM05D005240 ORTHO05D006471 3.2e-75 285.4 186 73.1
Thecc.10G068200 Theobroma cacao HOM05D005240 ORTHO05D006471 1.2e-74 283.5 167 77.2
Gohir.D04G083000 Gossypium hirsutum HOM05D005240 ORTHO05D006471 2.7e-74 282.3 166 77.1
Actinidia38251 Actinidia chinensis HOM05D005240 ORTHO05D006471 6.0e-74 281.2 167 77.8
GSVIVG01016337001 Vitis vinifera HOM05D005240 ORTHO05D006471 7.8e-74 280.8 160 80.6
TWI15G1019 Tripterygium wilfordii HOM05D005240 ORTHO05D006471 1.3e-73 280.0 165 79.4
Duzib114G0729 Durio zibethinus HOM05D005240 ORTHO05D006471 1.7e-73 279.6 166 78.9
MSTRG.355 Avicennia marina HOM05D005240 ORTHO05D006471 5.1e-73 278.1 160 77.5
Medtr1g095890 Medicago truncatula HOM05D005240 ORTHO05D006471 5.1e-73 278.1 166 78.3
Cc09_g02730 Coffea canephora HOM05D005240 ORTHO05D006471 8.6e-73 277.3 166 75.3
Migut.F01799 Erythranthe guttata HOM05D005240 ORTHO05D006471 8.6e-73 277.3 160 79.4
COL.COLO4_23732 Corchorus olitorius HOM05D005240 ORTHO05D006471 1.9e-72 276.2 166 78.3
arahy.Tifrunner.gnm1.ann1.CT8M8A Arachis hypogaea HOM05D005240 ORTHO05D006471 2.5e-72 275.8 165 76.4
Atru.chr12.634 Acer truncatum HOM05D005240 ORTHO05D006471 4.3e-72 275.0 175 74.9
RcHm_v2.0_Chr1g0364101 Rosa chinensis HOM05D005240 ORTHO05D006471 7.3e-72 274.2 167 76.0
Hma1.2p1_0453F.1_g156180 Hydrangea macrophylla HOM05D005240 ORTHO05D006471 1.2e-71 273.5 166 75.9
Manes.10G042700 Manihot esculenta HOM05D005240 ORTHO05D006471 2.1e-71 272.7 168 75.6
arahy.Tifrunner.gnm1.ann1.9PA5H9 Arachis hypogaea HOM05D005240 ORTHO05D006471 2.8e-71 272.3 160 76.9
Psat6g186000 Pisum sativum HOM05D005240 ORTHO05D006471 6.2e-71 271.2 165 75.8
CiPaw.01G276500 Carya illinoinensis HOM05D005240 ORTHO05D006471 8.1e-71 270.8 161 77.0
TWI38G0703 Tripterygium wilfordii HOM05D005240 ORTHO05D006471 8.1e-71 270.8 164 76.8
Lj5g0013716 Lotus japonicus HOM05D005240 ORTHO05D006471 1.1e-70 270.4 165 75.8
FvH4_7g20150 Fragaria vesca HOM05D005240 ORTHO05D006471 2.3e-70 269.2 166 75.9
FAN06G0525 Fragaria x ananassa HOM05D005240 ORTHO05D006471 2.3e-70 269.2 166 75.9
Lalb_Chr06g0162141 Lupinus albus HOM05D005240 ORTHO05D006471 2.3e-70 269.2 167 73.1
Sc14g0005480 Simmondsia chinensis HOM05D005240 ORTHO05D006471 4.0e-70 268.5 166 73.5
MD07G1179100 Malus domestica HOM05D005240 ORTHO05D006471 6.8e-70 267.7 171 75.4
Prupe.2G218200 Prunus persica HOM05D005240 ORTHO05D006471 8.9e-70 267.3 173 73.4
Hund19334 Selenicereus undatus HOM05D005240 ORTHO05D006471 8.9e-70 267.3 165 73.9
Peaxi162Scf00373g00310 Petunia axillaris HOM05D005240 ORTHO05D006471 1.2e-69 266.9 160 76.9
SGA_v2.0_scaffold122G33245 Striga asiatica HOM05D005240 ORTHO05D006471 1.5e-69 266.5 167 71.9
FAN03G2612 Fragaria x ananassa HOM05D005240 ORTHO05D006471 2.0e-69 266.2 166 74.7
Nn2g13000 Nelumbo nucifera HOM05D005240 ORTHO05D006471 3.4e-69 265.4 160 75.0
arahy.Tifrunner.gnm1.ann1.D7L05R Arachis hypogaea HOM05D005240 ORTHO05D006471 4.4e-69 265.0 165 74.5
VMungo0720G3076 Vigna mungo HOM05D005240 ORTHO05D006471 4.4e-69 265.0 164 76.8
SalBow3G0637 Salvia bowleyana HOM05D005240 ORTHO05D006471 5.8e-69 264.6 159 76.7
Thecc.10G068300 Theobroma cacao HOM05D005240 ORTHO05D006471 5.8e-69 264.6 174 71.8
Glyma.10G213900 Glycine max HOM05D005240 ORTHO05D006471 9.9e-69 263.8 160 78.1
Nitab4.5_0000061g0160 Nicotiana tabacum HOM05D005240 ORTHO05D006471 9.9e-69 263.8 160 74.4
Solyc10g005830.3 Solanum lycopersicum HOM05D005240 ORTHO05D006471 9.9e-69 263.8 160 75.0
DCAR_015276 Daucus carota HOM05D005240 ORTHO05D006471 1.3e-68 263.5 160 76.2
Nitab4.5_0001721g0020 Nicotiana tabacum HOM05D005240 ORTHO05D006471 1.3e-68 263.5 160 74.4
Phvul.007G091800 Phaseolus vulgaris HOM05D005240 ORTHO05D006471 1.3e-68 263.5 165 73.9
Aqoxy4G03197 Aquilegia oxysepala HOM05D005240 ORTHO05D006471 2.9e-68 262.3 160 73.8
FAN10G3611 Fragaria x ananassa HOM05D005240 ORTHO05D006471 4.9e-68 261.5 166 73.5
Sopen10g001790 Solanum pennellii HOM05D005240 ORTHO05D006471 6.4e-68 261.2 160 74.4
PGR044G1235 Punica granatum HOM05D005240 ORTHO05D006471 8.4e-68 260.8 167 74.9
Ca_10594_v3 Cicer arietinum L. HOM05D005240 ORTHO05D006471 1.1e-67 260.4 165 74.5
Eucgr.J01124 Eucalyptus grandis HOM05D005240 ORTHO05D006471 1.4e-67 260.0 160 74.4
vmacro17506 Vaccinium macrocarpon HOM05D005240 ORTHO05D006471 4.1e-67 258.5 160 75.6
Glyma.10G214000 Glycine max HOM05D005240 ORTHO05D006471 9.2e-67 257.3 158 76.6
TAR636G2864 Trochodendron aralioides HOM05D005240 ORTHO05D006471 1.6e-66 256.5 167 73.1
Lsat_1_v5_gn_2_115080 Lactuca sativa HOM05D005240 ORTHO05D006471 2.1e-66 256.1 164 72.6
THA.LOC104803452 Tarenaya hassleriana HOM05D005240 ORTHO05D006471 2.1e-66 256.1 167 72.5
Duzib128G0461 Durio zibethinus HOM05D005240 ORTHO05D006471 2.7e-66 255.8 160 72.5
Zm00001eb148920 Zea mays HOM05D005240 ORTHO05D006471 6.0e-66 254.6 167 71.3
AUR62043640 Chenopodium quinoa HOM05D005240 ORTHO05D006471 3.9e-65 251.9 193 64.2
HanXRQChr07g0200441 Helianthus annuus HOM05D005240 ORTHO05D006471 1.1e-64 250.4 164 70.7
ECA238G3142 Erigeron canadensis HOM05D005240 ORTHO05D006471 7.3e-64 247.7 165 70.9
Medtr1g095900 Medicago truncatula HOM05D005240 ORTHO05D006471 1.2e-63 246.9 163 69.3
PSO210G2142 Papaver somniferum HOM05D005240 ORTHO05D006471 3.6e-63 245.4 160 73.1
DCAR_019135 Daucus carota HOM05D005240 ORTHO05D006471 6.2e-63 244.6 162 71.0
MBI16_g46203_MAGBIO Magnolia biondii HOM05D005240 ORTHO05D006471 1.8e-62 243.0 180 64.4
CANSAT56G3849 Cannabis sativa HOM05D005240 ORTHO05D006471 3.1e-62 242.3 162 66.7
BcaC02g07666 Brassica carinata HOM05D005240 ORTHO05D006471 6.8e-62 241.1 166 68.1
A04p27280 Brassica napus HOM05D005240 ORTHO05D006471 6.8e-62 241.1 165 68.5
BraA04t18226Z Brassica rapa HOM05D005240 ORTHO05D006471 6.8e-62 241.1 165 68.5
Thhalv10017274m.g Eutrema salsugineum HOM05D005240 ORTHO05D006471 6.8e-62 241.1 165 68.5
Potri.010G217500 Populus trichocarpa HOM05D005240 ORTHO05D006471 6.8e-62 241.1 167 69.5
Sc09g0006770 Simmondsia chinensis HOM05D005240 ORTHO05D006471 8.9e-62 240.7 153 72.5
Carub.0004s1759 Capsella rubella HOM05D005240 ORTHO05D006471 4.4e-61 238.4 162 66.7
BcaB06g28877 Brassica carinata HOM05D005240 ORTHO05D006471 5.8e-61 238.0 165 68.5
ATR1159G086 Amborella trichopoda HOM05D005240 ORTHO05D006471 7.6e-61 237.7 170 63.5
AL4G31940 Arabidopsis lyrata HOM05D005240 ORTHO05D006471 1.3e-60 236.9 163 68.1
C04p64800 Brassica napus HOM05D005240 ORTHO05D006471 1.3e-60 236.9 167 67.7
BolC4t27957H Brassica oleracea HOM05D005240 ORTHO05D006471 1.3e-60 236.9 167 67.7
AUR62020787 Chenopodium quinoa HOM05D005240 ORTHO05D006471 1.3e-60 236.9 181 64.6
PSO170G1537 Papaver somniferum HOM05D005240 ORTHO05D006471 1.7e-60 236.5 158 70.3
Ah.16g108220 Amaranthus hybridus HOM05D005240 ORTHO05D006471 2.2e-60 236.1 179 62.6
CANSAT56G2007 Cannabis sativa HOM05D005240 ORTHO05D006471 2.2e-60 236.1 162 64.2
ECA238G0657 Erigeron canadensis HOM05D005240 ORTHO05D006471 6.4e-60 234.6 164 67.1
AT2G35820 Arabidopsis thaliana HOM05D005240 ORTHO05D006471 1.1e-59 233.8 164 65.9
CDE07G1884 Ceratophyllum demersum HOM05D005240 ORTHO05D006471 1.1e-59 233.8 163 69.9
Sp4g18090 Schrenkiella parvula HOM05D005240 ORTHO05D006471 1.4e-59 233.4 165 66.7
CARHR130080 Cardamine hirsuta HOM05D005240 ORTHO05D006471 1.9e-59 233.0 165 67.3
Sabra10G0168200 Salix brachista HOM05D005240 ORTHO05D006471 3.2e-59 232.3 169 67.5
Aa31LG7G14960 Aethionema arabicum HOM05D005240 ORTHO05D006471 7.1e-59 231.1 166 69.3
HPP92_007585 Vanilla planifolia HOM05D005240 ORTHO05D006471 4.6e-58 228.4 161 62.7
BcaB06g28875 Brassica carinata HOM05D005240 ORTHO05D006471 2.3e-57 226.1 164 65.2
Os01g0833200 Oryza sativa ssp. japonica HOM05D005240 ORTHO05D006471 3.0e-57 225.7 166 66.3
Aa31LG7G14930 Aethionema arabicum HOM05D005240 ORTHO05D006471 5.1e-57 224.9 165 67.3
AT2G35830 Arabidopsis thaliana HOM05D005240 ORTHO05D006471 6.6e-57 224.6 163 64.4
CsaV3_7G024930 Cucumis sativus L. HOM05D005240 ORTHO05D006471 3.3e-56 222.2 171 60.8
AL4G31930 Arabidopsis lyrata HOM05D005240 ORTHO05D006471 1.3e-55 220.3 162 63.0
MELO3C023691.2 Cucumis melo HOM05D005240 ORTHO05D006471 1.6e-55 219.9 176 59.1
AT2G35810 Arabidopsis thaliana HOM05D005240 ORTHO05D006471 2.8e-55 219.2 163 62.6
CAN.G492.51 Capsicum annuum HOM05D005240 ORTHO05D006471 2.8e-55 219.2 145 69.0
PSO210G2334 Papaver somniferum HOM05D005240 ORTHO05D006471 1.8e-54 216.5 159 62.3
Haze_16935 Corylus avellana HOM05D005240 ORTHO05D006471 5.3e-54 214.9 167 67.7
PSO210G3376 Papaver somniferum HOM05D005240 ORTHO05D006471 5.3e-54 214.9 158 61.4
Sed0009768 Sechium edule HOM05D005240 ORTHO05D006471 3.4e-53 212.2 164 61.6
Pp3c27_2400 Physcomitrium patens HOM05D005240 ORTHO05D006471 1.3e-52 210.3 160 61.2
AagrBONN_evm.TU.Sc2ySwM_117.2297 Anthoceros agrestis HOM05D005240 ORTHO05D006471 1.9e-51 206.5 163 60.7
Sed0007370 Sechium edule HOM05D005240 ORTHO05D006471 2.4e-51 206.1 167 55.7
Dinv31345 Davidia involucrata HOM05D005240 ORTHO05D006471 4.6e-50 201.8 117 78.6
Oeu057235.1 Olea europaea HOM05D005240 ORTHO05D006471 6.0e-50 201.4 112 77.7
Lj8C95T7 Lonicera japonica HOM05D005240 ORTHO05D006471 1.7e-49 199.9 113 77.9
Mapoly0113s0026 Marchantia polymorpha HOM05D005240 ORTHO05D006471 3.0e-49 199.1 161 58.4
TPR.G10956 Trifolium pratense HOM05D005240 ORTHO05D006471 2.8e-47 192.6 113 78.8
TPR.G15475 Trifolium pratense HOM05D005240 ORTHO05D006471 6.2e-47 191.4 113 73.5
SMO147G0062 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 4.5e-45 185.3 162 54.3
SMO330G0010 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 4.5e-45 185.3 160 55.0
SMO147G0059 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 1.3e-44 183.7 160 55.0
SMO330G0030 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 4.9e-44 181.8 162 54.3
arahy.Tifrunner.gnm1.ann1.ZWA97R Arachis hypogaea HOM05D005240 ORTHO05D006471 3.5e-42 175.6 142 59.9
CBR_g12600 Chara braunii HOM05D005240 ORTHO05D006471 2.3e-41 172.9 167 52.1
SMO330G0038 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 3.9e-41 172.2 146 56.8
arahy.Tifrunner.gnm1.ann1.65Y6VJ Arachis hypogaea HOM05D005240 ORTHO05D006471 2.2e-36 156.4 123 62.6
SMO257G0002 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 4.9e-36 155.2 162 48.8
unitig_0.g188 Utricularia gibba HOM05D005240 ORTHO05D006471 2.3e-33 146.4 104 63.5
MCO11G764 Micromonas commoda HOM05D005240 ORTHO05D006471 3.0e-33 146.0 162 46.9
SMO330G0050 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 3.0e-33 146.0 119 58.0
SMO330G0006 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 2.5e-32 142.9 161 46.0
ClCG09G009820 Citrullus lanatus HOM05D005240 ORTHO05D006471 2.8e-31 139.4 164 44.5
Cre08.g378650 Chlamydomonas reinhardtii HOM05D005240 ORTHO05D006471 1.2e-29 134.0 162 46.3
CARHR130090 Cardamine hirsuta HOM05D005240 ORTHO05D006471 2.0e-29 133.3 92 63.0
FAN01G3056 Fragaria x ananassa HOM05D005240 ORTHO05D006471 1.5e-24 117.1 67 74.6
Nitab4.5_0011688g0030 Nicotiana tabacum HOM05D005240 ORTHO05D006471 4.8e-23 112.1 111 47.7
SMO147G0342 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 1.4e-22 110.5 101 50.5
PRCOL_00006731 Prasinoderma coloniale HOM05D005240 ORTHO05D006471 2.4e-22 109.8 173 37.0
Cpa.g.sc53.24 Carica papaya HOM05D005240 ORTHO05D006471 1.3e-12 77.4 51 74.5
Lj8C95T8 Lonicera japonica HOM05D005240 ORTHO05D006471 3.8e-12 75.9 49 77.6
Os01g0833150 Oryza sativa ssp. japonica HOM05D005240 ORTHO05D006471 1.2e-10 70.9 53 66.0
SMO330G0037 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 2.3e-09 66.6 53 56.6
TPR.G970 Trifolium pratense HOM05D005240 ORTHO05D006471 7.4e-08 61.6 50 60.0
TPR.G38077 Trifolium pratense HOM05D005240 ORTHO05D006471 1.7e-07 60.5 48 60.4


User provided reference genes

Program Settings