Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10032785m.g Citrus clementina HOM05D009095 ORTHO05D005932 1.4e-105 386.3 201 100.0
Dinv34096 Davidia involucrata HOM05D009095 ORTHO05D005932 2.0e-35 153.3 191 51.3
CiPaw.06G088700 Carya illinoinensis HOM05D009095 ORTHO05D005932 3.3e-30 136.0 222 45.0
TAR006G0004 Trochodendron aralioides HOM05D009095 ORTHO05D005932 6.8e-28 128.3 207 44.9
TWI56G0627 Tripterygium wilfordii HOM05D009095 ORTHO05D005932 4.9e-26 122.1 195 43.1
GSVIVG01019947001 Vitis vinifera HOM05D009095 ORTHO05D005932 1.4e-25 120.6 195 41.5
Haze_11958 Corylus avellana HOM05D009095 ORTHO05D005932 1.2e-24 117.5 209 42.6
Thecc.02G339500 Theobroma cacao HOM05D009095 ORTHO05D005932 2.1e-24 116.7 198 43.9
Manes.05G106200 Manihot esculenta HOM05D009095 ORTHO05D005932 3.9e-23 112.5 209 41.1
Potri.017G079000 Populus trichocarpa HOM05D009095 ORTHO05D005932 2.5e-22 109.8 195 42.1
Sabra17G0070100 Salix brachista HOM05D009095 ORTHO05D005932 1.6e-21 107.1 211 41.7
Duzib251G0477 Durio zibethinus HOM05D009095 ORTHO05D005932 6.2e-21 105.1 216 37.5
vmacro01343 Vaccinium macrocarpon HOM05D009095 ORTHO05D005932 1.4e-20 104.0 201 41.3
QL03p069741 Quercus lobata HOM05D009095 ORTHO05D005932 2.0e-19 100.1 215 40.5
COL.COLO4_27972 Corchorus olitorius HOM05D009095 ORTHO05D005932 1.3e-18 97.4 208 38.0
Atru.chr11.1719 Acer truncatum HOM05D009095 ORTHO05D005932 2.4e-17 93.2 164 45.1
Phvul.002G169000 Phaseolus vulgaris HOM05D013667 ORTHO05D005932 1.3e-15 87.4 211 36.0
Migut.L01243 Erythranthe guttata HOM05D009095 ORTHO05D005932 2.3e-15 86.7 190 37.9
PGR102G2341 Punica granatum HOM05D009095 ORTHO05D005932 2.3e-15 86.7 215 35.3
Duzib084G1416 Durio zibethinus HOM05D008369 ORTHO05D005932 2.5e-14 83.2 206 36.9
TAR622G0621 Trochodendron aralioides HOM05D034691 ORTHO05D005932 3.3e-14 82.8 173 38.2
Gohir.D12G166200 Gossypium hirsutum HOM05D009095 ORTHO05D005932 4.3e-14 82.4 189 34.4
COL.COLO4_36949 Corchorus olitorius HOM05D008369 ORTHO05D005932 9.6e-14 81.3 198 38.9
CANSAT54G2635 Cannabis sativa HOM05D009095 ORTHO05D005932 4.8e-13 79.0 199 34.7
Gorai.008G179000 Gossypium raimondii HOM05D009095 ORTHO05D005932 8.1e-13 78.2 188 34.0
Actinidia19933 Actinidia chinensis HOM05D000944 ORTHO05D003581 1.4e-12 77.4 181 35.4
Gohir.A03G102500 Gossypium hirsutum HOM05D009095 ORTHO05D005932 1.4e-12 77.4 207 36.7
Gohir.A12G163200 Gossypium hirsutum HOM05D009095 ORTHO05D005932 2.4e-12 76.6 191 33.0
GSVIVG01007962001 Vitis vinifera HOM05D008369 ORTHO05D005932 2.4e-12 76.6 152 38.8
Lalb_Chr09g0329161 Lupinus albus HOM05D013667 ORTHO05D005932 5.3e-12 75.5 95 45.3
Dinv38746 Davidia involucrata HOM05D008369 ORTHO05D005932 6.9e-12 75.1 216 35.2
Peaxi162Scf00408g00521 Petunia axillaris HOM05D020902 ORTHO05D005932 9.0e-12 74.7 140 37.1
arahy.Tifrunner.gnm1.ann1.3IH7MW Arachis hypogaea HOM05D013667 ORTHO05D005932 1.2e-11 74.3 224 31.7
PGSC0003DMG400002821 Solanum tuberosum HOM05D020902 ORTHO05D005932 1.2e-11 74.3 95 45.3
CSS0001536 Camellia sinensis var. sinensis HOM05D008369 ORTHO05D005932 2.0e-11 73.6 187 35.3
arahy.Tifrunner.gnm1.ann1.G7V7VG Arachis hypogaea HOM05D013667 ORTHO05D005932 4.5e-11 72.4 227 31.7
Solyc04g005555.1 Solanum lycopersicum HOM05D020902 ORTHO05D005932 5.8e-11 72.0 96 44.8
Thecc.03G094300 Theobroma cacao HOM05D008369 ORTHO05D005932 5.8e-11 72.0 185 35.7
Gorai.005G143000 Gossypium raimondii HOM05D009095 ORTHO05D005932 9.9e-11 71.2 207 35.3
Nn3g17332 Nelumbo nucifera HOM05D009095 ORTHO05D005932 1.7e-10 70.5 214 31.8
Nn4g23279 Nelumbo nucifera HOM05D034691 ORTHO05D005932 2.2e-10 70.1 217 30.4
Sopen04g001590 Solanum pennellii HOM05D020902 ORTHO05D005932 2.2e-10 70.1 96 44.8
Gorai.008G194900 Gossypium raimondii HOM05D008369 ORTHO05D005932 4.9e-10 68.9 179 34.6
FAN18G3211 Fragaria x ananassa HOM05D008369 ORTHO05D005932 6.4e-10 68.6 201 32.3
Ca_23884_v3 Cicer arietinum L. HOM05D013667 ORTHO05D005932 8.4e-10 68.2 190 33.2
Dinv10658 Davidia involucrata HOM05D008369 ORTHO05D005932 1.4e-09 67.4 202 33.7
Actinidia31963 Actinidia chinensis HOM05D000944 ORTHO05D003581 3.2e-09 66.2 60 56.7
Cfa019277 Carpinus fangiana HOM05D008369 ORTHO05D005932 3.2e-09 66.2 194 33.5
Gohir.D12G181600 Gossypium hirsutum HOM05D008369 ORTHO05D005932 3.2e-09 66.2 179 34.1
Ah.03g134680 Amaranthus hybridus HOM05D036760 ORTHO05D031035 5.4e-09 65.5 197 29.9
Ciclev10022335m.g Citrus clementina HOM05D008369 ORTHO05D005932 7.1e-09 65.1 162 37.0
Lalb_Chr12g0196981 Lupinus albus HOM05D008369 ORTHO05D005932 7.1e-09 65.1 189 31.2
Rhsim08G0152100 Rhododendron simsii HOM05D008369 ORTHO05D005932 7.1e-09 65.1 168 33.3
ClCG09G021960 Citrullus lanatus HOM05D029799 ORTHO05D005932 9.3e-09 64.7 163 33.7
DCAR_026037 Daucus carota HOM05D008369 ORTHO05D005932 9.3e-09 64.7 144 36.8
Gohir.A11G032000 Gossypium hirsutum HOM05D008369 ORTHO05D005932 9.3e-09 64.7 172 35.5
Manes.06G089401 Manihot esculenta HOM05D000041 ORTHO05D006140 9.3e-09 64.7 163 35.6
Sed0012343 Sechium edule HOM05D029799 ORTHO05D005932 9.3e-09 64.7 87 48.3
CSS0024821 Camellia sinensis var. sinensis HOM05D008369 ORTHO05D005932 1.2e-08 64.3 187 33.2
MELO3C002975.2 Cucumis melo HOM05D029799 ORTHO05D005932 1.6e-08 63.9 182 33.5
Ah.02g113780 Amaranthus hybridus HOM05D008369 ORTHO05D005932 2.1e-08 63.5 204 32.8
Lj4g0019858 Lotus japonicus HOM05D013667 ORTHO05D005932 3.5e-08 62.8 73 50.7
TPR.G34048 Trifolium pratense HOM05D013667 ORTHO05D005932 3.5e-08 62.8 200 31.5
Glyma.20G031200 Glycine max HOM05D013667 ORTHO05D005932 4.6e-08 62.4 203 31.0
RcHm_v2.0_Chr7g0182121 Rosa chinensis HOM05D008369 ORTHO05D005932 4.6e-08 62.4 206 32.0
Gohir.D11G035400 Gossypium hirsutum HOM05D008369 ORTHO05D005932 6.0e-08 62.0 172 34.9
Gohir.A12G179000 Gossypium hirsutum HOM05D008369 ORTHO05D005932 7.9e-08 61.6 170 34.1
FAN08G2699 Fragaria x ananassa HOM05D008369 ORTHO05D005932 1.0e-07 61.2 180 33.3
Cc11_g12580 Coffea canephora HOM05D020902 ORTHO05D005932 1.3e-07 60.8 192 29.2
FAN13G2099 Fragaria x ananassa HOM05D008369 ORTHO05D005932 1.8e-07 60.5 201 29.4
MBI16_g25840_MAGBIO Magnolia biondii HOM05D036885 ORTHO05D034247 1.8e-07 60.5 201 30.8
Peaxi162Scf00187g01112 Petunia axillaris HOM05D020902 ORTHO05D005932 1.8e-07 60.5 140 35.0
Aqoxy3G03491 Aquilegia oxysepala HOM05D037250 ORTHO05D005932 3.0e-07 59.7 236 29.2
FvH4_5g14530 Fragaria vesca HOM05D008369 ORTHO05D005932 3.0e-07 59.7 201 29.9
TAR622G1347 Trochodendron aralioides HOM05D034691 ORTHO05D005932 3.0e-07 59.7 173 32.9
AL5G13000 Arabidopsis lyrata HOM05D012098 ORTHO05D005932 5.1e-07 58.9 96 37.5
Sed0006867 Sechium edule HOM05D008369 ORTHO05D005932 5.1e-07 58.9 223 28.7
CARHR145660 Cardamine hirsuta HOM05D012098 ORTHO05D005932 6.7e-07 58.5 77 44.2
Gorai.007G038200 Gossypium raimondii HOM05D008369 ORTHO05D005932 1.1e-06 57.8 172 34.3
Cc00_g25850 Coffea canephora HOM05D012087 ORTHO05D005932 1.5e-06 57.4 217 29.5
HanXRQChr08g0210661 Helianthus annuus HOM05D009095 ORTHO05D005932 1.5e-06 57.4 75 49.3
AT2G03310 Arabidopsis thaliana HOM05D012098 ORTHO05D005932 1.9e-06 57.0 62 43.5
Lsat_1_v5_gn_8_49101 Lactuca sativa HOM05D009095 ORTHO05D005932 1.9e-06 57.0 219 31.1
Medtr4g082330 Medicago truncatula HOM05D013667 ORTHO05D005932 1.9e-06 57.0 196 30.1
Actinidia04866 Actinidia chinensis HOM05D008369 ORTHO05D005932 2.5e-06 56.6 188 30.9
arahy.Tifrunner.gnm1.ann1.7B8RN4 Arachis hypogaea HOM05D008369 ORTHO05D005932 2.5e-06 56.6 89 43.8
Carub.0005s0227 Capsella rubella HOM05D012098 ORTHO05D005932 2.5e-06 56.6 62 43.5
Medtr4g108990 Medicago truncatula HOM05D008369 ORTHO05D005932 2.5e-06 56.6 179 30.2
PSO063G4624 Papaver somniferum HOM05D037250 ORTHO05D050201 2.5e-06 56.6 220 30.9
Migut.D01759 Erythranthe guttata HOM05D012087 ORTHO05D005932 3.3e-06 56.2 215 30.2
Sc12g0006540 Simmondsia chinensis HOM05D008369 ORTHO05D005932 3.3e-06 56.2 193 29.5
QL03p069756 Quercus lobata HOM05D012615 ORTHO05D005932 5.6e-06 55.5 80 45.0
THA.LOC104805944 Tarenaya hassleriana HOM05D012098 ORTHO05D005932 5.6e-06 55.5 65 46.2
Cpa.g.c38098 Carica papaya HOM05D009095 ORTHO05D005932 7.4e-06 55.1 138 31.9
Hund25207 Selenicereus undatus HOM05D009095 ORTHO05D005932 7.4e-06 55.1 208 26.4
Eucgr.B03194 Eucalyptus grandis HOM05D066173 ORTHO05D005932 9.6e-06 54.7 228 26.3


User provided reference genes

Program Settings