Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10032728m.g Citrus clementina HOM05D004603 ORTHO05D005244 3.4e-118 428.3 216 100.0
Atru.chr11.2495 Acer truncatum HOM05D004603 ORTHO05D005244 1.8e-74 283.1 218 69.3
Atru.chr11.2466 Acer truncatum HOM05D004603 ORTHO05D005244 1.5e-73 280.0 218 68.3
Dinv32050 Davidia involucrata HOM05D004603 ORTHO05D005244 4.4e-73 278.5 218 67.9
Ciclev10017990m.g Citrus clementina HOM05D004603 ORTHO05D005244 6.4e-72 274.6 170 85.3
Haze_03089 Corylus avellana HOM05D004603 ORTHO05D005244 5.9e-70 268.1 216 63.4
GSVIVG01022405001 Vitis vinifera HOM05D004603 ORTHO05D005244 1.7e-69 266.5 220 64.1
Potri.001G024000 Populus trichocarpa HOM05D004603 ORTHO05D005244 5.0e-69 265.0 214 65.0
Cfa010862 Carpinus fangiana HOM05D004603 ORTHO05D005244 8.6e-69 264.2 216 62.5
QL04p013733 Quercus lobata HOM05D004603 ORTHO05D005244 9.5e-68 260.8 219 62.6
Potri.003G201500 Populus trichocarpa HOM05D004603 ORTHO05D005244 1.6e-67 260.0 216 64.8
Sabra01G0018000 Salix brachista HOM05D004603 ORTHO05D005244 8.0e-67 257.7 214 63.6
Gorai.012G080400 Gossypium raimondii HOM05D004603 ORTHO05D005244 8.9e-66 254.2 209 63.6
Gohir.D04G071400 Gossypium hirsutum HOM05D004603 ORTHO05D005244 4.4e-65 251.9 209 63.2
Duzib114G1022 Durio zibethinus HOM05D004603 ORTHO05D005244 4.9e-64 248.4 210 62.4
COL.COLO4_25832 Corchorus olitorius HOM05D004603 ORTHO05D005244 8.3e-64 247.7 209 63.2
Manes.11G002700 Manihot esculenta HOM05D004603 ORTHO05D005244 4.1e-63 245.4 211 60.2
Thecc.10G006000 Theobroma cacao HOM05D004603 ORTHO05D005244 7.0e-63 244.6 216 61.6
Cpa.g.sc197.6 Carica papaya HOM05D004603 ORTHO05D005244 1.2e-62 243.8 215 59.1
Rhsim07G0062700 Rhododendron simsii HOM05D004603 ORTHO05D005244 1.2e-62 243.8 215 60.0
Lalb_Chr19g0138841 Lupinus albus HOM05D004603 ORTHO05D005244 4.6e-62 241.9 212 60.8
COL.COLO4_29439 Corchorus olitorius HOM05D004603 ORTHO05D005244 2.3e-61 239.6 207 61.8
TWI38G0287 Tripterygium wilfordii HOM05D004603 ORTHO05D005244 3.9e-61 238.8 212 59.9
TAR053G0004 Trochodendron aralioides HOM05D004603 ORTHO05D005244 3.9e-61 238.8 221 59.7
CiPaw.14G006000 Carya illinoinensis HOM05D004603 ORTHO05D005244 5.0e-61 238.4 211 58.8
Phvul.010G125900 Phaseolus vulgaris HOM05D004603 ORTHO05D005244 1.9e-60 236.5 220 59.1
Duzib128G1390 Durio zibethinus HOM05D004603 ORTHO05D005244 2.5e-60 236.1 209 59.3
vmacro13728 Vaccinium macrocarpon HOM05D004603 ORTHO05D005244 1.2e-59 233.8 215 58.6
Lj9A646T46 Lonicera japonica HOM05D004603 ORTHO05D005244 2.1e-59 233.0 231 56.7
Eucgr.G03257 Eucalyptus grandis HOM05D004603 ORTHO05D005244 4.7e-59 231.9 217 57.6
Glyma.11G113600 Glycine max HOM05D004603 ORTHO05D005244 4.7e-59 231.9 216 57.4
Glyma.12G039500 Glycine max HOM05D004603 ORTHO05D005244 8.1e-59 231.1 216 56.5
RcHm_v2.0_Chr1g0319701 Rosa chinensis HOM05D004603 ORTHO05D005244 1.1e-58 230.7 211 58.8
Hma1.2p1_0902F.1_g234830 Hydrangea macrophylla HOM05D004603 ORTHO05D005244 1.8e-58 229.9 220 57.3
TWI63G1183 Tripterygium wilfordii HOM05D004603 ORTHO05D005244 3.1e-58 229.2 210 58.1
VMungo1127G1982 Vigna mungo HOM05D004603 ORTHO05D005244 1.2e-57 227.3 220 57.7
Ca_20912_v3 Cicer arietinum L. HOM05D004603 ORTHO05D005244 1.7e-56 223.4 220 56.4
TAR369G0595 Trochodendron aralioides HOM05D004603 ORTHO05D005244 1.7e-56 223.4 216 56.5
Psat7g182960 Pisum sativum HOM05D004603 ORTHO05D005244 2.9e-56 222.6 222 54.5
VMungo1127G0155 Vigna mungo HOM05D004603 ORTHO05D005244 2.9e-56 222.6 215 55.8
Medtr4g071040 Medicago truncatula HOM05D004603 ORTHO05D005244 1.1e-55 220.7 216 54.6
CiPaw.13G010800 Carya illinoinensis HOM05D004603 ORTHO05D005244 1.4e-55 220.3 172 62.2
FAN06G0782 Fragaria x ananassa HOM05D000001 ORTHO05D009083 7.1e-55 218.0 217 56.7
Lj3g0020788 Lotus japonicus HOM05D004603 ORTHO05D005244 1.6e-54 216.9 218 54.1
CANSAT35G1099 Cannabis sativa HOM05D004603 ORTHO05D005244 2.7e-54 216.1 220 55.0
Prupe.2G029400 Prunus persica HOM05D004603 ORTHO05D005244 2.7e-54 216.1 218 56.4
PGR031G2747 Punica granatum HOM05D004603 ORTHO05D005244 7.8e-54 214.5 213 55.9
FAN03G3254 Fragaria x ananassa HOM05D004603 ORTHO05D005244 1.0e-53 214.2 216 55.6
Lj1A1244T16 Lonicera japonica HOM05D004603 ORTHO05D005244 2.3e-53 213.0 182 61.5
arahy.Tifrunner.gnm1.ann1.S7XKIQ Arachis hypogaea HOM05D004603 ORTHO05D005244 7.3e-52 208.0 216 51.9
MD02G1294600 Malus domestica HOM05D004603 ORTHO05D005244 7.3e-52 208.0 215 52.6
Actinidia30721 Actinidia chinensis HOM05D004603 ORTHO05D005244 9.5e-52 207.6 168 65.5
MD00G1188600 Malus domestica HOM05D004603 ORTHO05D005244 2.1e-51 206.5 215 52.1
MELO3C012448.2 Cucumis melo HOM05D004603 ORTHO05D005244 2.8e-51 206.1 221 52.9
TPR.G30506 Trifolium pratense HOM05D004603 ORTHO05D005244 3.6e-51 205.7 225 51.6
CsaV3_5G036510 Cucumis sativus L. HOM05D004603 ORTHO05D005244 4.7e-51 205.3 216 53.2
arahy.Tifrunner.gnm1.ann1.30UV9I Arachis hypogaea HOM05D004603 ORTHO05D005244 6.2e-51 204.9 216 51.4
Sed0010230 Sechium edule HOM05D004603 ORTHO05D005244 6.2e-51 204.9 215 52.6
arahy.Tifrunner.gnm1.ann1.FEA8VP Arachis hypogaea HOM05D004603 ORTHO05D005244 1.4e-50 203.8 216 50.9
Ca_14312_v3 Cicer arietinum L. HOM05D004603 ORTHO05D005244 8.9e-50 201.1 219 54.3
DCAR_031824 Daucus carota HOM05D004603 ORTHO05D005244 8.9e-50 201.1 220 50.5
Atru.chr11.786 Acer truncatum HOM05D004603 ORTHO05D005244 1.5e-49 200.3 144 71.5
Sed0015753 Sechium edule HOM05D004603 ORTHO05D005244 7.6e-49 198.0 216 50.9
SGA_v2.0_scaffold119G32802 Striga asiatica HOM05D004603 ORTHO05D005244 2.2e-48 196.4 212 51.9
Migut.B01205 Erythranthe guttata HOM05D004603 ORTHO05D005244 1.4e-47 193.7 219 49.8
ECA248G3322 Erigeron canadensis HOM05D004603 ORTHO05D005244 7.1e-47 191.4 214 52.3
FAN01G0231 Fragaria x ananassa HOM05D000001 ORTHO05D009083 7.1e-47 191.4 176 56.8
Nitab4.5_0000316g0040 Nicotiana tabacum HOM05D004603 ORTHO05D005244 9.2e-47 191.0 220 47.7
DCAR_024211 Daucus carota HOM05D004603 ORTHO05D005244 1.2e-46 190.7 224 49.1
FAN10G0154 Fragaria x ananassa HOM05D004603 ORTHO05D005244 1.2e-46 190.7 183 55.7
Nitab4.5_0013777g0030 Nicotiana tabacum HOM05D004603 ORTHO05D005244 1.2e-46 190.7 220 46.8
TPR.G3881 Trifolium pratense HOM05D004603 ORTHO05D005244 2.1e-46 189.9 175 56.6
DCAR_009134 Daucus carota HOM05D004603 ORTHO05D005244 2.7e-46 189.5 221 49.3
CAN.G745.15 Capsicum annuum HOM05D004603 ORTHO05D005244 3.5e-46 189.1 220 47.7
Cc02_g29120 Coffea canephora HOM05D004603 ORTHO05D005244 3.5e-46 189.1 218 50.0
SalBow5G1211 Salvia bowleyana HOM05D004603 ORTHO05D005244 7.8e-46 188.0 215 49.8
ClCG05G020790 Citrullus lanatus HOM05D004603 ORTHO05D005244 1.7e-45 186.8 305 40.0
SalBow1G4372 Salvia bowleyana HOM05D004603 ORTHO05D005244 2.3e-45 186.4 215 50.2
SalBow5G1267 Salvia bowleyana HOM05D004603 ORTHO05D005244 2.3e-45 186.4 215 49.8
Aqoxy2G00300 Aquilegia oxysepala HOM05D004603 ORTHO05D005244 6.6e-45 184.9 195 50.3
MSTRG.20534 Avicennia marina HOM05D004603 ORTHO05D005244 9.6e-44 181.0 196 51.5
Solyc01g068450.4 Solanum lycopersicum HOM05D004603 ORTHO05D005244 2.1e-43 179.9 220 45.5
Peaxi162Scf00047g02136 Petunia axillaris HOM05D004603 ORTHO05D005244 2.8e-43 179.5 209 47.8
HanXRQChr15g0493861 Helianthus annuus HOM05D004603 ORTHO05D005244 1.1e-42 177.6 209 51.2
Lj2g0001718 Lotus japonicus HOM05D004603 ORTHO05D005244 8.9e-42 174.5 188 52.1
Sopen01g030410 Solanum pennellii HOM05D004603 ORTHO05D005244 8.9e-42 174.5 223 45.7
Actinidia21527 Actinidia chinensis HOM05D004603 ORTHO05D005244 2.6e-41 172.9 235 46.8
CSS0012283 Camellia sinensis var. sinensis HOM05D004603 ORTHO05D005244 4.4e-41 172.2 139 65.5
CSS0050281 Camellia sinensis var. sinensis HOM05D004603 ORTHO05D005244 2.2e-40 169.9 139 64.7
Peaxi162Scf00309g00324 Petunia axillaris HOM05D004603 ORTHO05D005244 1.4e-39 167.2 164 52.4
Aa31LG6G8480 Aethionema arabicum HOM05D004603 ORTHO05D005244 1.2e-38 164.1 212 45.3
PGSC0003DMG400023243 Solanum tuberosum HOM05D004603 ORTHO05D005244 1.6e-38 163.7 177 51.4
THA.LOC104819124 Tarenaya hassleriana HOM05D004603 ORTHO05D005244 1.0e-37 161.0 218 45.4
EL10Ac2g02852 Beta vulgaris HOM05D004603 ORTHO05D005244 1.7e-37 160.2 186 46.8
MD07G1031900 Malus domestica HOM05D004603 ORTHO05D005244 1.1e-36 157.5 141 58.2
Hund13330 Selenicereus undatus HOM05D004603 ORTHO05D005244 1.1e-36 157.5 167 48.5
AUR62037226 Chenopodium quinoa HOM05D004603 ORTHO05D005244 7.3e-36 154.8 200 46.0
MBI13_g05166_MAGBIO Magnolia biondii HOM05D004603 ORTHO05D005244 1.3e-35 154.1 153 56.2
BcaC07g37535 Brassica carinata HOM05D004603 ORTHO05D005244 2.8e-35 152.9 218 42.2
BolC8t47853H Brassica oleracea HOM05D000499 ORTHO05D002825 2.8e-35 152.9 210 41.9
AUR62026828 Chenopodium quinoa HOM05D004603 ORTHO05D005244 2.8e-35 152.9 175 48.0
Sc10g0004260 Simmondsia chinensis HOM05D004603 ORTHO05D005244 8.1e-35 151.4 213 40.8
Carub.0001s3260 Capsella rubella HOM05D004603 ORTHO05D005244 4.0e-34 149.1 210 44.8
BcaB04g17864 Brassica carinata HOM05D004603 ORTHO05D005244 6.9e-34 148.3 213 41.8
AT1G34570 Arabidopsis thaliana HOM05D004603 ORTHO05D005244 4.5e-33 145.6 211 42.7
A08p08230 Brassica napus HOM05D000499 ORTHO05D002825 4.5e-33 145.6 213 40.8
BraA08t32841Z Brassica rapa HOM05D000499 ORTHO05D002825 9.9e-33 144.4 207 40.6
Gohir.A05G333100 Gossypium hirsutum HOM05D004603 ORTHO05D005244 2.2e-32 143.3 119 61.3
AL1G49060 Arabidopsis lyrata HOM05D004603 ORTHO05D005244 3.8e-32 142.5 214 41.6
Carub.0007s3712 Capsella rubella HOM05D004603 ORTHO05D005244 3.8e-32 142.5 175 44.6
SEGI_29054 Sequoiadendron giganteum HOM05D004603 ORTHO05D005244 1.4e-31 140.6 141 51.8
CDE08G1561 Ceratophyllum demersum HOM05D004603 ORTHO05D005244 1.9e-31 140.2 167 49.1
PSO017G3894 Papaver somniferum HOM05D004603 ORTHO05D005244 4.2e-31 139.0 178 44.4
SEGI_15222 Sequoiadendron giganteum HOM05D004603 ORTHO05D005244 4.2e-31 139.0 121 56.2
PSO063G4454 Papaver somniferum HOM05D004603 ORTHO05D005244 7.1e-31 138.3 161 46.0
PSO528G0152 Papaver somniferum HOM05D004603 ORTHO05D005244 1.2e-30 137.5 178 44.9
BcaC08g43772 Brassica carinata HOM05D004603 ORTHO05D005244 1.6e-30 137.1 211 38.4
Ah.12g065100 Amaranthus hybridus HOM05D004603 ORTHO05D005244 2.1e-30 136.7 170 41.2
Oeu062071.1 Olea europaea HOM05D004603 ORTHO05D005244 2.1e-30 136.7 136 53.7
unitig_26.g8818 Utricularia gibba HOM05D004414 ORTHO05D005244 4.6e-30 135.6 177 42.4
C06p11480 Brassica napus HOM05D004603 ORTHO05D005244 1.0e-29 134.4 175 41.7
HanXRQChr13g0394011 Helianthus annuus HOM05D004603 ORTHO05D005244 1.0e-29 134.4 136 55.1
AT3G15750 Arabidopsis thaliana HOM05D004603 ORTHO05D005244 1.3e-29 134.0 174 44.8
BcaB07g33112 Brassica carinata HOM05D004603 ORTHO05D005244 2.3e-29 133.3 176 42.0
PSO170G0256 Papaver somniferum HOM05D004603 ORTHO05D005244 2.3e-29 133.3 178 44.4
HPP92_010478 Vanilla planifolia HOM05D004603 ORTHO05D005244 3.9e-29 132.5 141 46.1
Mapoly0122s0047 Marchantia polymorpha HOM05D004603 ORTHO05D005244 6.7e-29 131.7 146 44.5
Sp1g29690 Schrenkiella parvula HOM05D004603 ORTHO05D005244 1.1e-28 131.0 151 47.0
Os01g0950800 Oryza sativa ssp. japonica HOM05D004603 ORTHO05D005244 1.5e-28 130.6 208 37.5
AL7G44820 Arabidopsis lyrata HOM05D004603 ORTHO05D005244 4.3e-28 129.0 189 40.7
Thhalv10009671m.g Eutrema salsugineum HOM05D004603 ORTHO05D005244 9.6e-28 127.9 150 47.3
ATR0721G140 Amborella trichopoda HOM05D004603 ORTHO05D005244 1.6e-27 127.1 131 47.3
Lsat_1_v5_gn_1_97861 Lactuca sativa HOM05D004603 ORTHO05D005244 2.1e-27 126.7 118 57.6
RcHm_v2.0_Chr7g0218601 Rosa chinensis HOM05D004603 ORTHO05D005244 2.8e-27 126.3 121 56.2
CARHR033890 Cardamine hirsuta HOM05D004603 ORTHO05D005244 3.6e-27 125.9 210 39.5
Os10g0580500 Oryza sativa ssp. japonica HOM05D004603 ORTHO05D005244 2.4e-26 123.2 129 48.1
CAN.G1571.2 Capsicum annuum HOM05D004603 ORTHO05D005244 2.0e-25 120.2 113 54.9
Sp7g17090 Schrenkiella parvula HOM05D004603 ORTHO05D005244 7.6e-25 118.2 151 43.0
Pp3c5_22730 Physcomitrium patens HOM05D004603 ORTHO05D005244 8.4e-24 114.8 126 42.1
QL02p069618 Quercus lobata HOM05D004603 ORTHO05D005244 8.4e-24 114.8 103 56.3
FAN13G2986 Fragaria x ananassa HOM05D004603 ORTHO05D005244 4.2e-23 112.5 131 48.1
FvH4_5g29020 Fragaria vesca HOM05D004603 ORTHO05D005244 3.5e-22 109.4 125 44.8
ATR0217G019 Amborella trichopoda HOM05D004603 ORTHO05D005244 6.0e-22 108.6 138 42.8
FAN18G3634 Fragaria x ananassa HOM05D004603 ORTHO05D005244 1.8e-21 107.1 91 51.6
Zm00001eb363050 Zea mays HOM05D004603 ORTHO05D005244 3.3e-20 102.8 155 37.4
Zm00001eb140990 Zea mays HOM05D004603 ORTHO05D005244 4.3e-20 102.4 203 34.0
FAN08G2679 Fragaria x ananassa HOM05D004603 ORTHO05D005244 2.8e-19 99.8 234 35.0
Sabra03G0149000 Salix brachista HOM05D004603 ORTHO05D005244 2.0e-17 93.6 217 38.7
MBI13_g05162_MAGBIO Magnolia biondii HOM05D004603 ORTHO05D005244 3.4e-17 92.8 181 34.8
ECA248G0603 Erigeron canadensis HOM05D004603 ORTHO05D005244 2.9e-16 89.7 94 52.1
CDE09G0498 Ceratophyllum demersum HOM05D002215 ORTHO05D002238 4.9e-16 89.0 72 58.3
Lj1C1244T2 Lonicera japonica HOM05D004603 ORTHO05D005244 5.5e-15 85.5 89 52.8
SHI03956 Sapria himalayana HOM05D005973 ORTHO05D007285 1.2e-14 84.3 74 55.4
AagrBONN_evm.TU.Sc2ySwM_117.3931 Anthoceros agrestis HOM05D004603 ORTHO05D005244 3.5e-14 82.8 174 31.6
FvH4_3g19550 Fragaria vesca HOM05D004603 ORTHO05D005244 1.0e-13 81.3 87 55.2
CBR_g23146 Chara braunii HOM05D004542 ORTHO05D005380 1.3e-13 80.9 113 38.9
FAN11G0237 Fragaria x ananassa HOM05D004603 ORTHO05D005244 1.3e-13 80.9 87 55.2
A01p20230 Brassica napus HOM05D017989 ORTHO05D021787 1.1e-12 77.8 98 42.9
SMO170G0061 Selaginella moellendorffii HOM05D004603 ORTHO05D005244 1.5e-12 77.4 97 40.2
SMO137G0333 Selaginella moellendorffii HOM05D004603 ORTHO05D005244 4.3e-12 75.9 97 40.2
ECA248G0821 Erigeron canadensis HOM05D004603 ORTHO05D005244 9.6e-12 74.7 98 45.9
Dinv31495 Davidia involucrata HOM05D004603 ORTHO05D005244 1.2e-09 67.8 74 54.1
BraA09t38742Z Brassica rapa HOM05D000499 ORTHO05D002825 4.5e-09 65.9 97 38.1
Cre09.g388245 Chlamydomonas reinhardtii HOM05D004603 ORTHO05D005244 1.7e-08 63.9 60 48.3
BolC6t36282H Brassica oleracea HOM05D000499 ORTHO05D002825 2.2e-08 63.5 96 35.4
AUR62017456 Chenopodium quinoa HOM05D004603 ORTHO05D005244 5.0e-08 62.4 86 48.8
AagrBONN_evm.TU.Sc2ySwM_368.759 Anthoceros agrestis HOM05D004603 ORTHO05D005244 9.3e-07 58.2 140 27.1


User provided reference genes

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